View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4516_low_11 (Length: 303)
Name: NF4516_low_11
Description: NF4516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4516_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 288
Target Start/End: Complemental strand, 33048469 - 33048196
Alignment:
| Q |
16 |
aagaacataaatatagttggaagtatctaatgtaaatacatgtcggacagatgagcaaaacaaaattactgttttgatgtgattgtgtttccttaattat |
115 |
Q |
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| T |
33048469 |
aagaacataaatatagttggaagtgtctaatgtaaatacatgtcggacagatgagcaaaacaaaattactgttttgatgtgattgtgtttccttaattat |
33048370 |
T |
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| Q |
116 |
gatgacct-ttgctggtgtttttcctaggtggtagaggatttgttgaggtgaaagactttggtgttcttgatgtggtgaagtcaatgagttggtgttgtg |
214 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33048369 |
gatgacctgttgctggtgtttttgctaggtggtagaggatttgttgaggtgaaagactttggtgttcttgatgtggtgaagtcaatgagttggtgtggtg |
33048270 |
T |
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| Q |
215 |
agaatatatgtttggggattagaaaagcgtatgtgattctgaatgctacgagtggttcaatatctgaagttttt |
288 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33048269 |
agaatatatgtttggggattagaaaagcgtacgtgattctgaatgctacgagtggttcaatatctgaagttttt |
33048196 |
T |
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Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 140 - 261
Target Start/End: Original strand, 7674927 - 7675048
Alignment:
| Q |
140 |
taggtggtagaggatttgttgaggtgaaagactttggtgttcttgatgtggtgaagtcaatgagttggtgttgtgagaatatatgtttggggattagaaa |
239 |
Q |
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|||||||||| || ||||| ||||||||||| |||||||| | || |||||||||| |||||||||||| | ||||||||||||||||||||||||| |
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| T |
7674927 |
taggtggtagggggtttgtggaggtgaaagagtttggtgtaccggacatggtgaagtccatgagttggtgtggggagaatatatgtttggggattagaag |
7675026 |
T |
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| Q |
240 |
agcgtatgtgattctgaatgct |
261 |
Q |
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| T |
7675027 |
ggaatatgtgattttgaatgct |
7675048 |
T |
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