View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4516_low_13 (Length: 281)

Name: NF4516_low_13
Description: NF4516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4516_low_13
NF4516_low_13
[»] chr1 (19 HSPs)
chr1 (35-273)||(23570896-23571135)
chr1 (38-202)||(37457596-37457761)
chr1 (38-199)||(19993339-19993501)
chr1 (35-202)||(1035714-1035882)
chr1 (38-199)||(7900128-7900290)
chr1 (38-202)||(46823593-46823757)
chr1 (36-189)||(50428451-50428605)
chr1 (38-194)||(43496370-43496527)
chr1 (62-202)||(51613251-51613391)
chr1 (35-202)||(7167957-7168125)
chr1 (46-162)||(10574363-10574480)
chr1 (36-185)||(47394340-47394492)
chr1 (117-202)||(19322780-19322865)
chr1 (90-202)||(27641543-27641656)
chr1 (139-202)||(7386356-7386419)
chr1 (96-202)||(26707085-26707191)
chr1 (97-187)||(29058575-29058666)
chr1 (35-80)||(30717401-30717446)
chr1 (33-100)||(26723252-26723320)
[»] chr4 (23 HSPs)
chr4 (38-261)||(779867-780091)
chr4 (125-273)||(4974509-4974657)
chr4 (38-199)||(23559987-23560149)
chr4 (34-202)||(52326969-52327138)
chr4 (38-189)||(55875815-55875967)
chr4 (38-201)||(5415149-5415313)
chr4 (38-204)||(9268304-9268470)
chr4 (38-202)||(2681068-2681232)
chr4 (35-201)||(17476171-17476338)
chr4 (63-202)||(7907368-7907504)
chr4 (36-192)||(46381987-46382144)
chr4 (36-202)||(41377342-41377509)
chr4 (38-199)||(48262962-48263128)
chr4 (38-162)||(19485780-19485908)
chr4 (34-189)||(55875965-55876121)
chr4 (34-181)||(43354933-43355081)
chr4 (117-184)||(38567945-38568012)
chr4 (33-103)||(30875428-30875498)
chr4 (38-188)||(30052344-30052496)
chr4 (36-78)||(37556209-37556251)
chr4 (42-162)||(2714199-2714320)
chr4 (129-202)||(17712592-17712664)
chr4 (90-162)||(34388825-34388898)
[»] chr3 (20 HSPs)
chr3 (38-186)||(15877730-15877879)
chr3 (35-199)||(53464263-53464428)
chr3 (38-199)||(52313856-52314018)
chr3 (61-199)||(35424128-35424267)
chr3 (57-199)||(1995568-1995711)
chr3 (45-189)||(36177187-36177332)
chr3 (56-189)||(49644337-49644471)
chr3 (64-202)||(40793171-40793309)
chr3 (95-201)||(11467230-11467337)
chr3 (36-188)||(29096078-29096232)
chr3 (38-109)||(7352592-7352663)
chr3 (117-183)||(49786995-49787061)
chr3 (67-194)||(35846158-35846284)
chr3 (67-189)||(28939675-28939798)
chr3 (40-162)||(35496082-35496205)
chr3 (117-183)||(4489826-4489892)
chr3 (90-186)||(14898436-14898533)
chr3 (116-194)||(7352088-7352166)
chr3 (110-181)||(41397222-41397292)
chr3 (62-160)||(45266875-45266975)
[»] chr7 (17 HSPs)
chr7 (45-273)||(32485437-32485656)
chr7 (33-202)||(48252848-48253018)
chr7 (38-181)||(44396369-44396513)
chr7 (38-187)||(43692526-43692676)
chr7 (117-188)||(36118086-36118156)
chr7 (39-185)||(36725768-36725915)
chr7 (36-202)||(49080736-49080902)
chr7 (67-196)||(8404748-8404877)
chr7 (48-177)||(49081222-49081352)
chr7 (67-202)||(43598786-43598922)
chr7 (38-188)||(38346378-38346530)
chr7 (36-189)||(46700826-46700980)
chr7 (90-177)||(35034334-35034421)
chr7 (117-200)||(40160304-40160387)
chr7 (97-162)||(23869939-23870005)
chr7 (139-219)||(41159471-41159549)
chr7 (96-159)||(12879285-12879349)
[»] chr5 (24 HSPs)
chr5 (36-201)||(39060167-39060333)
chr5 (34-202)||(34769529-34769698)
chr5 (35-198)||(9959282-9959445)
chr5 (38-160)||(10523804-10523927)
chr5 (97-202)||(4925098-4925204)
chr5 (218-273)||(16328130-16328185)
chr5 (52-188)||(14593851-14593988)
chr5 (129-199)||(35205242-35205312)
chr5 (129-199)||(35211839-35211909)
chr5 (38-98)||(4924779-4924839)
chr5 (62-189)||(23089298-23089426)
chr5 (38-160)||(14913434-14913556)
chr5 (124-202)||(14947789-14947867)
chr5 (38-106)||(35205123-35205191)
chr5 (35-106)||(37902442-37902513)
chr5 (38-134)||(35211939-35212036)
chr5 (38-157)||(34383704-34383826)
chr5 (38-105)||(38698221-38698288)
chr5 (118-180)||(10923727-10923789)
chr5 (39-106)||(14947657-14947724)
chr5 (117-184)||(38697882-38697948)
chr5 (105-162)||(35470325-35470383)
chr5 (49-157)||(23090679-23090788)
chr5 (136-196)||(38744671-38744731)
[»] scaffold0015 (1 HSPs)
scaffold0015 (34-201)||(56549-56717)
[»] chr2 (22 HSPs)
chr2 (39-202)||(6858965-6859129)
chr2 (35-202)||(32914419-32914587)
chr2 (38-202)||(39375668-39375833)
chr2 (38-201)||(33386646-33386805)
chr2 (45-188)||(38609893-38610036)
chr2 (34-188)||(3739461-3739615)
chr2 (38-202)||(9104543-9104708)
chr2 (62-182)||(14657492-14657612)
chr2 (36-188)||(37069875-37070029)
chr2 (38-131)||(7395456-7395550)
chr2 (95-189)||(8322145-8322240)
chr2 (62-151)||(4897252-4897342)
chr2 (62-151)||(4944646-4944736)
chr2 (63-188)||(5147101-5147226)
chr2 (33-109)||(37258122-37258198)
chr2 (60-162)||(18565740-18565843)
chr2 (38-126)||(29794379-29794468)
chr2 (117-168)||(8443218-8443269)
chr2 (126-188)||(7394958-7395020)
chr2 (117-189)||(3384732-3384804)
chr2 (62-177)||(3739849-3739965)
chr2 (67-162)||(40095791-40095887)
[»] chr8 (12 HSPs)
chr8 (39-199)||(40278928-40279089)
chr8 (38-202)||(1156233-1156398)
chr8 (38-202)||(9682321-9682485)
chr8 (33-202)||(18226960-18227130)
chr8 (33-202)||(17312813-17312982)
chr8 (40-201)||(11425461-11425622)
chr8 (38-202)||(35158845-35159010)
chr8 (67-196)||(27594234-27594363)
chr8 (38-191)||(37479163-37479317)
chr8 (38-187)||(45251430-45251579)
chr8 (67-152)||(27107774-27107859)
chr8 (98-151)||(34954327-34954380)
[»] chr6 (6 HSPs)
chr6 (64-204)||(19763539-19763679)
chr6 (56-162)||(2844136-2844243)
chr6 (35-204)||(19789199-19789369)
chr6 (47-139)||(30775332-30775425)
chr6 (38-189)||(10682482-10682633)
chr6 (67-148)||(13685396-13685478)
[»] scaffold0110 (2 HSPs)
scaffold0110 (38-188)||(13773-13925)
scaffold0110 (38-188)||(21510-21662)
[»] scaffold0867 (1 HSPs)
scaffold0867 (38-109)||(3556-3627)


Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 35 - 273
Target Start/End: Complemental strand, 23571135 - 23570896
Alignment:
Q  35 ctaagagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactca 133  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||| |||||    
T  23571135 ctaagagcacccgcatccataccacccatatgggtggtataaatgggtcccacataatacattatattacttcacatttttccattatttaaacaactca 23571036  T
Q  134 attatattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaatatgtactttaaatgggtccataaattaattaca 233  Q
    | |||||||| |||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23571035 actatattttttaaatatccataccactcctccaaaactctaaaatgagtcccacttatcttacaatatgtactttaaacgggtccataaattaattaca 23570936  T
Q  234 ttgtattgctttttcatattttgattctatatagtattat 273  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  23570935 ttgtattgctttatcatattttgattctatatagtattat 23570896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 38 - 202
Target Start/End: Original strand, 37457596 - 37457761
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactcaatt 136  Q
    |||||| ||||||||| ||||||||||| |||||||||||||||| |||| ||||||| ||||||| |||||  || ||| ||||| ||||||||||| |    
T  37457596 agagcatccacatccacaccacccatataggtggtataaatgggtcccacgtaatacaatatattatttcacacttctcaattattaaaaccactcaact 37457695  T
Q  137 atattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaatat 202  Q
    ||||||||||||||| |||||||||| | |||||||||||||| ||||||||||||||||||||||    
T  37457696 atattttctaaatatacataccactcttccaaaactttaaaataggtcccacttatcttacaatat 37457761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 38 - 199
Target Start/End: Complemental strand, 19993501 - 19993339
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcact-tttttcattatttaaaccactcaatt 136  Q
    |||||| |||||||||| | || || |||||||||||| ||||| ||||||||||| |||||||||||| ||  ||||| |||||||||||||||||| |    
T  19993501 agagcatccacatccatgcaactcaaatgggtggtatagatgggatccacataatatattatattactttacactttttaattatttaaaccactcaact 19993402  T
Q  137 atattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaa 199  Q
    ||||||||||||||||||||||||||||  |||||| |||||| |||| ||||||||||||||    
T  19993401 atattttctaaatatccataccactcctctaaaactctaaaataggtcacacttatcttacaa 19993339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 35 - 202
Target Start/End: Original strand, 1035714 - 1035882
Alignment:
Q  35 ctaagagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactca 133  Q
    ||||||||| ||||||||||||||| ||||||||||||||| |||||| |||  ||||||| ||||||| |||||  || ||| |||||||||||||| |    
T  1035714 ctaagagcatccacatccataccactcatatgggtggtatatatgggtcccatgtaatacaatatattatttcacacttctcaattatttaaaccactaa 1035813  T
Q  134 attatattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaatat 202  Q
    | |||||||||||||||| |||||||||| | ||||||||||||||  ||| |||||||||||||||||    
T  1035814 actatattttctaaatatacataccactcttccaaaactttaaaatatgtctcacttatcttacaatat 1035882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 38 - 199
Target Start/End: Original strand, 7900128 - 7900290
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactcaatt 136  Q
    ||||||||||||||||| ||||| | |||| | |||||||||||  |||||||||| |||||||||||| |   ||  || ||||||||||||||||| |    
T  7900128 agagcacccacatccatgccacctaaatggatcgtataaatgggacccacataatatattatattactttatacttcccaattatttaaaccactcaact 7900227  T
Q  137 atattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaa 199  Q
    | ||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||    
T  7900228 acattttctaaatatccataccactcctctaaaactctaaaatgggtcccacttatcttacaa 7900290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 38 - 202
Target Start/End: Complemental strand, 46823757 - 46823593
Alignment:
Q  38 agagcacccacatccataccaccc-atatgggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactcaat 135  Q
    ||||||||||||||||| |||| | | ||||||||||||||||||| |||  |||||| ||||||||||||||  |||||| |||||||||||||||||     
T  46823757 agagcacccacatccatgccactctacatgggtggtataaatgggtcccag-taatactttatattacttcacacttttcaattatttaaaccactcaac 46823659  T
Q  136 tatattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaatat 202  Q
    || |||||||||| |||||||||| || | |||||| ||| ||||||||||||| ||||||||||||    
T  46823658 tacattttctaaacatccataccattcttacaaaac-ttataatgggtcccactaatcttacaatat 46823593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 36 - 189
Target Start/End: Complemental strand, 50428605 - 50428451
Alignment:
Q  36 taagagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactcaa 134  Q
    |||||||| ||| ||||||  ||  |||||||||||||||||||| |  |||  |||| |||||||||||||||  || ||| ||||||||| |||||||    
T  50428605 taagagcatccatatccatgtcattcatatgggtggtataaatggatctcacgcaataaattatattacttcacacttctcaattatttaaatcactcaa 50428506  T
Q  135 ttatattttctaaatatccataccactccttcaaaactttaaaatgggtcccact 189  Q
     ||||||||||||||||||||||||||||| ||||||| |||| |||||||||||    
T  50428505 ctatattttctaaatatccataccactcctccaaaactctaaagtgggtcccact 50428451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 38 - 194
Target Start/End: Original strand, 43496370 - 43496527
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactcaatt 136  Q
    |||||| |||||||||| |||||||| ||| ||||||||| |||| ||||||||||||||||||||| ||||  || || ||||||||||| | |||| |    
T  43496370 agagcatccacatccatgccacccatttggatggtataaacgggtcccacataatacattatattacctcacacttctcaattatttaaactattcaact 43496469  T
Q  137 atattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatct 194  Q
    | ||||| |||||||||||||||| | ||  ||||| |||||||||||||||| ||||    
T  43496470 acattttttaaatatccataccacccattataaactctaaaatgggtcccactaatct 43496527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 62 - 202
Target Start/End: Original strand, 51613251 - 51613391
Alignment:
Q  62 atatgggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactcaattatattttctaaatatccataccac 160  Q
    ||||| ||||||||||||| | ||||||||||  ||||||||||||||  ||| || ||||||||||||||||| || ||||||||||||  ||||||||    
T  51613251 atatgagtggtataaatggatcccacataataatttatattacttcacactttccaattatttaaaccactcaactacattttctaaatactcataccac 51613350  T
Q  161 tccttcaaaactttaaaatgggtcccacttatcttacaatat 202  Q
    || | |||||| ||||||||||||||||| ||||||||||||    
T  51613351 tcttccaaaac-ttaaaatgggtcccactaatcttacaatat 51613391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 202
Target Start/End: Complemental strand, 7168125 - 7167957
Alignment:
Q  35 ctaagagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactca 133  Q
    |||||||||| |||||||||  |||||||||| || ||||||||||||  |||||||||  ||||||||||| || |||| | |||||||||||||| ||    
T  7168125 ctaagagcactcacatccatgtcacccatatgagtagtataaatgggtctcacataatattttatattactttacattttccaattatttaaaccaccca 7168026  T
Q  134 attata-ttttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaatat 202  Q
    | || | ||||||||||||||| || ||| || ||||||| |||||| |||| |||| ||||||||||||    
T  7168025 actacatttttctaaatatccacacgact-ctccaaaactctaaaataggtctcactaatcttacaatat 7167957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 46 - 162
Target Start/End: Complemental strand, 10574480 - 10574363
Alignment:
Q  46 cacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactcaattatattttc 144  Q
    ||||||||| ||||  ||||  |||||||||||| ||||||||||||| | ||||||||||||| ||| || |||||||||| ||||||||||||||||     
T  10574480 cacatccatgccactaatataagtggtataaatgagttccacataatataatatattacttcacatttctcaattatttaaatcactcaattatattttt 10574381  T
Q  145 taaatatccataccactc 162  Q
    ||||||| ||||| ||||    
T  10574380 taaatattcatactactc 10574363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 36 - 185
Target Start/End: Original strand, 47394340 - 47394492
Alignment:
Q  36 taagagcacccacatccataccac--ccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactc 132  Q
    |||||||| |||||||||||||||  |||| || || |||||||||||||||||||||||||||||||||||||||  ||  | ||||||||||| ||||    
T  47394340 taagagcatccacatccataccacacccatttgagtagtataaatgggttccacataatacattatattacttcacacttcccaattatttaaactactc 47394439  T
Q  133 aattatattttctaaatatccataccactccttcaaaactttaaaatgggtcc 185  Q
       || ||||| ||||||| |||||||||| |  |||| | ||||||||||||    
T  47394440 gtctacattttttaaatattcataccactcttctaaaagtctaaaatgggtcc 47394492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 19322865 - 19322780
Alignment:
Q  117 attatttaaaccactcaattatattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaatat 202  Q
    ||||||||||||| |||| || ||||| ||||||||||||||||| || ||||||| |||||| | ||||||||||||||||||||    
T  19322865 attatttaaaccattcaactacattttttaaatatccataccacttctccaaaactctaaaatagatcccacttatcttacaatat 19322780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 202
Target Start/End: Original strand, 27641543 - 27641656
Alignment:
Q  90 aatacattatattacttcacttttttca-ttatttaaaccactcaattatattttctaaatatccataccactccttcaaaactttaaaatgggtcccac 188  Q
    |||||||||||||| ||||   || ||| ||||||||||||| ||| || |||||| ||||||||||||||||| |  ||||||||||||||||||  ||    
T  27641543 aatacattatattagttcatacttctcagttatttaaaccacccaactaaattttccaaatatccataccactcatctaaaactttaaaatgggtcttac 27641642  T
Q  189 ttatcttacaatat 202  Q
    |||| | |||||||    
T  27641643 ttatttcacaatat 27641656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 7386356 - 7386419
Alignment:
Q  139 attttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaatat 202  Q
    |||||||| ||||||||| |||||||| |||| |||||||| |||| |||||||||||||||||    
T  7386356 attttctatatatccatatcactcctttaaaattttaaaataggtctcacttatcttacaatat 7386419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 202
Target Start/End: Complemental strand, 26707191 - 26707085
Alignment:
Q  96 ttatattacttcacttttttca-ttatttaaaccactcaattatattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatct 194  Q
    |||||||| |||||  |||||| |||||||||||| |||| || ||||||||||||| |||||||||| | |||||| ||| |||| |||||||| || |    
T  26707191 ttatattagttcacacttttcaattatttaaaccattcaactacattttctaaatattcataccactcttacaaaac-ttacaatgagtcccactaattt 26707093  T
Q  195 tacaatat 202  Q
    ||||||||    
T  26707092 tacaatat 26707085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 187
Target Start/End: Complemental strand, 29058666 - 29058575
Alignment:
Q  97 tatattacttcacttttttca-ttatttaaaccactcaattatattttctaaatatccataccactccttcaaaactttaaaatgggtccca 187  Q
    |||||||||| | ||||| || ||||||||| |||||||| | ||| | ||||||| |||||||||| |  |||| ||||||||||||||||    
T  29058666 tatattactttattttttacaattatttaaatcactcaatcacattctttaaatattcataccactcttctaaaattttaaaatgggtccca 29058575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 30717401 - 30717446
Alignment:
Q  35 ctaagagcacccacatccataccacccatatgggtggtataaatgg 80  Q
    |||||||||||||||||||||||| | |||||| ||| ||||||||    
T  30717401 ctaagagcacccacatccataccatctatatggatggaataaatgg 30717446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 26723320 - 26723252
Alignment:
Q  33 ttctaagagcacccacatccataccac-ccatatgggtggtataaatgggttccacataatacattata 100  Q
    |||||||||||||||||||||| |||| | | ||||||||||||||| ||  |||| |||||| |||||    
T  26723320 ttctaagagcacccacatccatgccactctacatgggtggtataaataggccccacgtaatactttata 26723252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 38 - 261
Target Start/End: Original strand, 779867 - 780091
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactcaatt 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||| |||||||||||||||||| |    
T  779867 agagcacccacatccataccacccatatgggtggtataaatgggtctcacataatacattatattacttcacatttttccattatttaaaccactcaact 779966  T
Q  137 atattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaatatgtactttaaatgggtccataaattaattacattg 236  Q
    |||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||    
T  779967 atattttctaaatatccataccactcctccaaaattctaaaatgggtcccacttatcttacaatatatactttaaatgggtttataaattaattacattg 780066  T
Q  237 tattgctttttcatattttgattct 261  Q
    ||||||||| |||||||||||||||    
T  780067 tattgctttatcatattttgattct 780091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 125 - 273
Target Start/End: Complemental strand, 4974657 - 4974509
Alignment:
Q  125 aaccactcaattatattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaatatgtactttaaatgggtccataaa 224  Q
    |||||||||| |||||||||||||||| ||||||||||||  |||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  4974657 aaccactcaactatattttctaaatattcataccactcctcaaaaactctaaaataggtctcacttatcttacaatatgtactttaaatgggtccataaa 4974558  T
Q  225 ttaattacattgtattgctttttcatattttgattctatatagtattat 273  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4974557 ttaattacattgtattgctttatcatattttgattctatatagtattat 4974509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 38 - 199
Target Start/End: Original strand, 23559987 - 23560149
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactcaatt 136  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||  |||||||||| |||| ||||||| ||  ||| || ||||||||||||||||| |    
T  23559987 agagcacccacatccatgccacccaaatgggtggtataaatgggacccacataatatattacattactttacactttccaattatttaaaccactcaact 23560086  T
Q  137 atattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaa 199  Q
    | ||||||||||||||||| ||||||||  |||||| ||||||||||||||||||||||||||    
T  23560087 acattttctaaatatccatgccactcctctaaaactctaaaatgggtcccacttatcttacaa 23560149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 34 - 202
Target Start/End: Complemental strand, 52327138 - 52326969
Alignment:
Q  34 tctaagagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactc 132  Q
    |||||||||| |||||||||| ||||||||||| || |||||||||||| ||||||||||  ||||||||||||||  ||||| |||||||||| |||||    
T  52327138 tctaagagcagccacatccatgccacccatatgagtagtataaatgggtcccacataatattttatattacttcacacttttcaattatttaaatcactc 52327039  T
Q  133 aattata-ttttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaatat 202  Q
    || || | |||||||||||||||||||||| || ||||||| |||||| ||||||||| ||||||||||||    
T  52327038 aactacatttttctaaatatccataccact-ctccaaaactctaaaataggtcccactaatcttacaatat 52326969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 38 - 189
Target Start/End: Complemental strand, 55875967 - 55875815
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactcaatt 136  Q
    |||||| ||||||||||||||||||| || || |||||||||||| |||||||||| ||||||||||||||| | | || |||| ||||||||||||| |    
T  55875967 agagcatccacatccataccacccatgtgtgtagtataaatgggtcccacataataaattatattacttcacatctctcaattacttaaaccactcaact 55875868  T
Q  137 atattttctaaatatccataccactccttcaaaactttaaaatgggtcccact 189  Q
    | ||||| ||||||| |||||||||| |  |||||| ||||||||||||||||    
T  55875867 acattttttaaatattcataccactcatctaaaactctaaaatgggtcccact 55875815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 38 - 201
Target Start/End: Original strand, 5415149 - 5415313
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactcaatt 136  Q
    |||||| |||||||||| ||||||| |||| ||||||||||||| ||||||||||| |||||||||||| ||  ||  | |||||||||  ||||||| |    
T  5415149 agagcaaccacatccatgccacccaaatggatggtataaatgggatccacataatatattatattactttacacttcccaattatttaactcactcaact 5415248  T
Q  137 atattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaata 201  Q
    | ||||||||||||| ||||||||||||  |||||| |||||||||||  | |||||||||||||    
T  5415249 acattttctaaatattcataccactcctctaaaactctaaaatgggtcttatttatcttacaata 5415313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 38 - 204
Target Start/End: Original strand, 9268304 - 9268470
Alignment:
Q  38 agagcacccacatccataccaccc-atatgggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactcaat 135  Q
    ||||||||||||||||| |||| | | ||||||||||||||||||| |||  |||||| ||||||||||||||  |||||| |||||||||||||||||     
T  9268304 agagcacccacatccatgccactctacatgggtggtataaatgggtcccag-taatactttatattacttcacacttttcaattatttaaaccactcaac 9268402  T
Q  136 tatattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaatatgt 204  Q
    || |||||||||| |||||||||| || | |||||| ||| ||||||||||||| ||||||||| ||||    
T  9268403 tacattttctaaacatccataccattcttacaaaac-ttataatgggtcccactaatcttacaaaatgt 9268470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 38 - 202
Target Start/End: Complemental strand, 2681232 - 2681068
Alignment:
Q  38 agagcacccacatccataccaccc-atatgggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactcaat 135  Q
    ||||||||||||||||| |||| | | ||||||||||||||||||| |||  |||||| ||||||||||||||  |||||| |||||||||||||||||     
T  2681232 agagcacccacatccatgccactctacatgggtggtataaatgggtcccag-taatactttatattacttcacacttttcaattatttaaaccactcaac 2681134  T
Q  136 tatattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaatat 202  Q
    || || ||||||| |||||||||| || | |||||| ||| ||||||||||||| ||||||||||||    
T  2681133 tacatcttctaaacatccataccattcttacaaaac-ttataatgggtcccactaatcttacaatat 2681068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 35 - 201
Target Start/End: Complemental strand, 17476338 - 17476171
Alignment:
Q  35 ctaagagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactca 133  Q
    ||||||| ||||||||||||||||| ||  | ||||||||||||||   |||| | ||| |||||||| |||||| |||| || ||||||| || |||||    
T  17476338 ctaagagtacccacatccataccactcaatttggtggtataaatggaccccacttgatatattatatttcttcacattttccaattatttagacaactca 17476239  T
Q  134 attatattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaata 201  Q
    | || |||||||||||||||||||||||| | ||||| |||||||||| ||||||| || ||||||||    
T  17476238 actacattttctaaatatccataccactcatccaaaattttaaaatggatcccactaattttacaata 17476171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 63 - 202
Target Start/End: Complemental strand, 7907504 - 7907368
Alignment:
Q  63 tatgggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactcaattatattttctaaatatccataccact 161  Q
    |||||||||||||||||||| ||||||||||| |||||   ||||||  ||| || ||||||||||||||||| || |||||||||||||||||| ||||    
T  7907504 tatgggtggtataaatgggtcccacataatactttata---cttcacactttccaattatttaaaccactcaactacattttctaaatatccatatcact 7907408  T
Q  162 ccttcaaaactttaaaatgggtcccacttatcttacaatat 202  Q
    | | |||||| ||||||||| || |||| ||||||||||||    
T  7907407 cttccaaaac-ttaaaatggatctcactaatcttacaatat 7907368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 36 - 192
Target Start/End: Complemental strand, 46382144 - 46381987
Alignment:
Q  36 taagagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactcaa 134  Q
    |||||||| |||||||||| |||||||  | ||||||||||||||   | || ||||| ||||||||| |||||  || ||| ||||||||||||||| |    
T  46382144 taagagcatccacatccatgccacccaatttggtggtataaatggaccctacttaatatattatattagttcacacttctcaattatttaaaccactcca 46382045  T
Q  135 ttatattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttat 192  Q
     ||||||||  |||||| |||||||||  |  ||||||||||||||||||||||||||    
T  46382044 ctatatttttcaaatattcataccacttatctaaaactttaaaatgggtcccacttat 46381987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 36 - 202
Target Start/End: Complemental strand, 41377509 - 41377342
Alignment:
Q  36 taagagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactcaa 134  Q
    |||||||| |||| |||||  |||| |||||| | ||||||||||||   |||||||| ||||||||||||| |  || ||| |||||| ||| ||||||    
T  41377509 taagagcatccacttccatgtcacctatatggatagtataaatgggtcttacataatatattatattacttcccacttctcaattattttaactactcaa 41377410  T
Q  135 ttatattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaatat 202  Q
     || ||||| ||||||| ||||| |||| || |||||| | |||||||||||||| ||||||||||||    
T  41377409 ctacattttttaaatattcatactactcttttaaaactcttaaatgggtcccactaatcttacaatat 41377342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 199
Target Start/End: Original strand, 48262962 - 48263128
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattata---ttacttcacttttttca-ttatttaaaccactc- 132  Q
    |||||| |||||||||| ||||||| |||| ||||||||||| |   ||||||||| ||||||   |||||| ||  |||||| ||||||||| || |      
T  48262962 agagcatccacatccatgccacccaaatggatggtataaatgagactcacataatatattatactattactttacacttttcaattatttaaatcatttt 48263061  T
Q  133 aattatattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaa 199  Q
    || || ||||||||||||| ||||||||||||  |||||| ||||||||||| ||||||||||||||    
T  48263062 aactacattttctaaatattcataccactcctctaaaactctaaaatgggtctcacttatcttacaa 48263128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 38 - 162
Target Start/End: Complemental strand, 19485908 - 19485780
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttcc---acataatacattatattacttcac-ttttttcattatttaaaccactca 133  Q
    |||||||||||||||||  || |||||||||||||||||||||  |||   || ||||||||||||||| || ||  ||||| ||||||||||||| |||    
T  19485908 agagcacccacatccatgtcatccatatgggtggtataaatggactccactacttaatacattatattattttacactttttaattatttaaaccattca 19485809  T
Q  134 attatattttctaaatatccataccactc 162  Q
     ||| ||||||||||||| | ||||||||    
T  19485808 cttacattttctaaatattcgtaccactc 19485780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 189
Target Start/End: Original strand, 55875965 - 55876121
Alignment:
Q  34 tctaagagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactc 132  Q
    |||||||||| |||||||||||| ||| || | ||||||||||||||   | || ||||| |||||||||||||||  || || ||||||||||| | ||    
T  55875965 tctaagagcatccacatccatactacctattttggtggtataaatggaccctacttaatatattatattacttcacacttctcaattatttaaactattc 55876064  T
Q  133 aattatattttctaaatatccataccactccttcaaaactttaaaatgggtcccact 189  Q
    || || | |||||||||||||||||| |||   ||||||| || ||| |||||||||    
T  55876065 aactacactttctaaatatccatacccctcacccaaaactctacaattggtcccact 55876121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 181
Target Start/End: Original strand, 43354933 - 43355081
Alignment:
Q  34 tctaagagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttcattatttaaaccactca 133  Q
    |||||||||| ||||||||||  ||  ||||| | |||||||||| |  |||||  |||| |||||||||||| ||   ||  |||||||||||||||||    
T  43354933 tctaagagcatccacatccatgacattcatattgatggtataaatagactccactcaatatattatattactttacaccttcaattatttaaaccactca 43355032  T
Q  134 attatattttctaaatatccataccactccttcaaaact-ttaaaatgg 181  Q
    |||| ||||| ||||||| |||| ||||  || |||||| |||||||||    
T  43355033 attacattttttaaatattcatatcacttttttaaaactcttaaaatgg 43355081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 38568012 - 38567945
Alignment:
Q  117 attatttaaaccactcaattatattttctaaatatccataccactccttcaaaactttaaaatgggtc 184  Q
    |||||||||||||||||| || ||||| ||||||| |||||||||  |  ||||||||||||||||||    
T  38568012 attatttaaaccactcaactacattttttaaatattcataccactattctaaaactttaaaatgggtc 38567945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 103
Target Start/End: Complemental strand, 30875498 - 30875428
Alignment:
Q  33 ttctaagagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatatta 103  Q
    |||| ||||||||||||||||| ||  ||||||| |||||||||||| || ||||  ||||||||||||||    
T  30875498 ttcttagagcacccacatccatgccttccatatgtgtggtataaatgagtcccactgaatacattatatta 30875428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 188
Target Start/End: Complemental strand, 30052496 - 30052344
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacatta-tattacttcac-ttttttcattatttaaaccactcaat 135  Q
    |||||| |||||||||||||||||| || | | |||||||| |   ||||| ||||  | | ||||||||||  |||||| ||||||||||||| ||||     
T  30052496 agagcatccacatccataccacccacattgatagtataaatagaccccacacaatatttaaatattacttcatattttttaattatttaaaccaatcaac 30052397  T
Q  136 tatattttctaaatatccataccactccttcaaaactttaaaatgggtcccac 188  Q
    || ||||| ||||||||||||| |||| |  |||||| |||| || |||||||    
T  30052396 tacattttttaaatatccatactactcatctaaaactctaaattgagtcccac 30052344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 78
Target Start/End: Original strand, 37556209 - 37556251
Alignment:
Q  36 taagagcacccacatccataccacccatatgggtggtataaat 78  Q
    ||||||||||||||||||||||||  ||||| |||||||||||    
T  37556209 taagagcacccacatccataccacttatatgagtggtataaat 37556251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 162
Target Start/End: Original strand, 2714199 - 2714320
Alignment:
Q  42 cacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactcaattatat 140  Q
    ||||||||||||| ||||  | |||||| |||||||||| |  ||| |||||| |||||||| ||||   ||| | |||||||||| || | || |||||    
T  2714199 cacccacatccatgccacttacatgggttgtataaatggatctcacgtaatactttatattatttcatactttccaattatttaaatcatttaactatat 2714298  T
Q  141 tttctaaatatccataccactc 162  Q
    ||| |||||||| |||||||||    
T  2714299 tttttaaatatcgataccactc 2714320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 17712664 - 17712592
Alignment:
Q  129 actcaattatattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaatat 202  Q
    |||||||||  |||| |||||||||||||||||  | |||||| ||||||||| ||||||| ||||||| ||||    
T  17712664 actcaattacgttttttaaatatccataccacttttccaaaac-ttaaaatggatcccactaatcttaccatat 17712592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 34388825 - 34388898
Alignment:
Q  90 aatacattatattacttcacttttttca-ttatttaaaccactcaattatattttctaaatatccataccactc 162  Q
    |||||||||||||| || || ||||||| |||||||||||||| ||  | ||||||||||||| |||| |||||    
T  34388825 aatacattatattattttacatttttcaattatttaaaccactaaaccacattttctaaatattcatatcactc 34388898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 38 - 186
Target Start/End: Original strand, 15877730 - 15877879
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcac-ttttttcattatttaaaccactcaatt 136  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||| |    
T  15877730 agagcacccccatccataccacccatatgggtggtataaatgggtcccacataatacattatattacttcacatttttccattatttaaaccactcaact 15877829  T
Q  137 atattttctaaatatccataccactccttcaaaactttaaaatgggtccc 186  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  15877830 atattttctaaatatccataccactcctccaaaactctaaaatgggtccc 15877879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 35 - 199
Target Start/End: Original strand, 53464263 - 53464428
Alignment:
Q  35 ctaagagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactca 133  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||  ||||||| ||||||||||||||| ||  |||  | ||||||||||||||||    
T  53464263 ctaagagcacccacatccatgccacccaaatgggtggtataaatgggacccacatattacattatattactttacactttctagttatttaaaccactca 53464362  T
Q  134 attatattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaa 199  Q
    | || |||||||||||||||||||||||||   |||||| ||||||||||||||||||||||||||    
T  53464363 actacattttctaaatatccataccactcccctaaaactctaaaatgggtcccacttatcttacaa 53464428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 38 - 199
Target Start/End: Original strand, 52313856 - 52314018
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactcaatt 136  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||  ||||||| ||||||||||||||| ||  |||  | ||||||||||||||||| |    
T  52313856 agagcacccacatccatgccacccaaatgggtggtataaatgggacccacatattacattatattactttacactttctagttatttaaaccactcaact 52313955  T
Q  137 atattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaa 199  Q
    | |||||||||||||||||||||||||   |||||| ||||||||||||||||||||||||||    
T  52313956 acattttctaaatatccataccactcccctaaaactctaaaatgggtcccacttatcttacaa 52314018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 61 - 199
Target Start/End: Original strand, 35424128 - 35424267
Alignment:
Q  61 catatgggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactcaattatattttctaaatatccatacca 159  Q
    |||||| |||||||||||||||  ||||||||||||||||||||||||| ||||||| ||||||||||||||||| || |||||||||||||||||||||    
T  35424128 catatgagtggtataaatgggtctcacataatacattatattacttcacatttttcaattatttaaaccactcaactacattttctaaatatccatacca 35424227  T
Q  160 ctccttc-aaaactttaaaatgggtcccacttatcttacaa 199  Q
    | ||||| |||||| ||||||||||| ||||||||||||||    
T  35424228 c-ccttctaaaactctaaaatgggtctcacttatcttacaa 35424267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 57 - 199
Target Start/End: Original strand, 1995568 - 1995711
Alignment:
Q  57 cacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactcaattatattttctaaatatccat 155  Q
    |||||||| || |||||||||||||| ||||||||||||||||||||||||||  ||  | ||||||||||||||| || || |||||||||||||||||    
T  1995568 cacccatacggatggtataaatgggtcccacataatacattatattacttcacacttcccaattatttaaaccacttaactacattttctaaatatccat 1995667  T
Q  156 accactccttcaaaactttaaaatgggtcccacttatcttacaa 199  Q
    |||||||||| |||||| ||||| | ||| || |||||||||||    
T  1995668 accactcctttaaaactctaaaacgagtctcatttatcttacaa 1995711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 45 - 189
Target Start/End: Complemental strand, 36177332 - 36177187
Alignment:
Q  45 ccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactcaattatatttt 143  Q
    |||||| ||| ||||| |||||| |||||||||||||| |||||||||| |||||||||||||||  ||| | ||||||| |||||||||  || |||||    
T  36177332 ccacattcatgccacctatatggatggtataaatgggtcccacataatagattatattacttcacactttccaattatttgaaccactcatctacatttt 36177233  T
Q  144 ctaaatatccataccactccttcaaaactttaaaatgggtcccact 189  Q
     ||||||| |||||||||| || |||||| |||||||| |||||||    
T  36177232 ttaaatattcataccactcatttaaaactctaaaatggatcccact 36177187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 56 - 189
Target Start/End: Complemental strand, 49644471 - 49644337
Alignment:
Q  56 ccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactcaattatattttctaaatatcca 154  Q
    ||||||||||||||||| |||||||   |||| ||||| |||||||||||||||  || ||| ||||||||||||||||| || |||||  |||||||||    
T  49644471 ccacccatatgggtggtttaaatggaccccacttaatatattatattacttcacacttctcaattatttaaaccactcaactacatttttcaaatatcca 49644372  T
Q  155 taccactccttcaaaactttaaaatgggtcccact 189  Q
    | |||||| | ||||||| ||||||||||||||||    
T  49644371 tgccactcatccaaaactctaaaatgggtcccact 49644337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 202
Target Start/End: Original strand, 40793171 - 40793309
Alignment:
Q  64 atgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactcaattatattttctaaatatccataccactc 162  Q
    ||||||||||||||||| |||||| |||||| |||||||||||| |  ||||| |||||||||||||||||| || ||||| ||||||| |||| |||||    
T  40793171 atgggtggtataaatggattccacgtaatactttatattacttctcacttttcaattatttaaaccactcaactacattttataaatattcatatcactc 40793270  T
Q  163 cttcaaaactttaaaatgggtcccacttatcttacaatat 202  Q
     | |||||| ||| ||||| ||||||| |||||| |||||    
T  40793271 ttacaaaac-ttacaatggatcccactaatcttataatat 40793309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 95 - 201
Target Start/End: Original strand, 11467230 - 11467337
Alignment:
Q  95 attatattacttcacttttttca-ttatttaaaccactcaattatattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatc 193  Q
    |||||||||||||||  || ||| |||||||||||| |||| || |||||||||||||||||| |||||||  |||| | ||||||||||| ||||||||    
T  11467230 attatattacttcacacttctcaattatttaaaccaatcaactacattttctaaatatccatatcactcctctaaaattctaaaatgggtctcacttatc 11467329  T
Q  194 ttacaata 201  Q
    ||||||||    
T  11467330 ttacaata 11467337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 36 - 188
Target Start/End: Original strand, 29096078 - 29096232
Alignment:
Q  36 taagagcacccacatccataccacccatatgggtggtataaatgggttccacataatacatta-tattacttcacttttttca-ttatttaaaccactca 133  Q
    |||||||| ||||||||| | |||||| || | ||||||||||||   ||||| |||| || | ||||||||||| ||||||| ||||||||||||||||    
T  29096078 taagagcatccacatccacatcacccacattgatggtataaatggaccccacacaatatataactattacttcacatttttcaattatttaaaccactca 29096177  T
Q  134 attatattttctaaatatccataccactccttcaaaactttaaaatgggtcccac 188  Q
    | || ||| | ||||||| |||||||||| || |||||| |||| | ||||||||    
T  29096178 actacattatttaaatattcataccactcatttaaaactctaaattaggtcccac 29096232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 7352663 - 7352592
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcac 109  Q
    |||||| ||||||||||  ||||||| ||||||||||||| |||| ||||||||||||||||||||| ||||    
T  7352663 agagcatccacatccatgtcacccatttgggtggtataaacgggtcccacataatacattatattacctcac 7352592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 49786995 - 49787061
Alignment:
Q  117 attatttaaaccactcaattatattttctaaatatccataccactccttcaaaactttaaaatgggt 183  Q
    |||||||||||||||||| |||||||| ||||||| |||||||||| |  |||||||||||||||||    
T  49786995 attatttaaaccactcaactatattttataaatattcataccactcatctaaaactttaaaatgggt 49787061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 194
Target Start/End: Original strand, 35846158 - 35846284
Alignment:
Q  67 ggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactcaattatattttctaaatatccataccactcctt 165  Q
    ||||| ||||||||||  ||| |||||| |||||||| || ||  |||||| |||||||||||| |||| || ||||||||||||||| |||||||| |     
T  35846158 ggtggaataaatgggtctcacgtaatactttatattattttacacttttcaattatttaaaccattcaactacattttctaaatatcc-taccactctta 35846256  T
Q  166 caaaactttaaaatgggtcccacttatct 194  Q
    |||||| ||| ||||||||||||| ||||    
T  35846257 caaaac-ttacaatgggtcccactaatct 35846284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 189
Target Start/End: Original strand, 28939675 - 28939798
Alignment:
Q  67 ggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactcaattatattttctaaatatccataccactcctt 165  Q
    |||||||||||| |   |||| ||||| |||||||||||||||  || ||| |||||||||| |||||| || ||||||||||||| |||| ||||| |     
T  28939675 ggtggtataaatagaccccacctaatatattatattacttcacacttctcaattatttaaactactcaactacattttctaaatattcatatcactcatc 28939774  T
Q  166 caaaactttaaaatgggtcccact 189  Q
    ||||||| || ||| |||||||||    
T  28939775 caaaactctacaattggtcccact 28939798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 162
Target Start/End: Original strand, 35496082 - 35496205
Alignment:
Q  40 agcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactcaattat 138  Q
    ||||| ||||||| | ||||| ||||| ||||||||||||||| | |||||||| |||||||||||||||  || || |||||||||| || |||| ||     
T  35496082 agcacacacatccttgccacctatatgagtggtataaatgggtcctacataatatattatattacttcacacttctcaattatttaaatcattcaactac 35496181  T
Q  139 attttctaaatatccataccactc 162  Q
    ||||| | ||| ||||||| ||||    
T  35496182 atttttttaatttccatactactc 35496205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 4489892 - 4489826
Alignment:
Q  117 attatttaaaccactcaattatattttctaaatatccataccactccttcaaaactttaaaatgggt 183  Q
    |||||||| |||||||||||||||||| |||||||  ||||||||| || |||||| ||||||||||    
T  4489892 attatttataccactcaattatattttataaatatttataccactcatttaaaactctaaaatgggt 4489826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 186
Target Start/End: Complemental strand, 14898533 - 14898436
Alignment:
Q  90 aatacattatattacttcacttttttca-ttatttaaaccactcaattatattttctaaatatccataccactccttcaaaactttaaaatgggtccc 186  Q
    |||||||||||||| || || ||||||| || ||||||||||| || || ||||||||||||| |||||||||  ||||||||| |||| || |||||    
T  14898533 aatacattatattattttacatttttcaattgtttaaaccactaaactacattttctaaatattcataccacttattcaaaactctaaattgagtccc 14898436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 7352166 - 7352088
Alignment:
Q  116 cattatttaaaccactcaattatattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatct 194  Q
    |||||||||||||| |||| || ||||| ||||||| |||||||| | ||  ||||| |||||||||||||||| ||||    
T  7352166 cattatttaaaccattcaactacattttttaaatattcataccacccattataaactctaaaatgggtcccactaatct 7352088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 181
Target Start/End: Complemental strand, 41397292 - 41397222
Alignment:
Q  110 ttttttcattatttaaaccactcaattatattttctaaatatccataccactccttcaaaactttaaaatgg 181  Q
    |||||| ||||||||||| | | ||||||||||| ||||||||||||||| || | ||||| ||||||||||    
T  41397292 ttttttaattatttaaacaattaaattatatttt-taaatatccataccattcatccaaaattttaaaatgg 41397222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 160
Target Start/End: Complemental strand, 45266975 - 45266875
Alignment:
Q  62 atatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactcaatta-tattttctaaatatccatacca 159  Q
    ||||| |||||||||||||||  |||  |||||||||||||| |||||  || || || |||||||||||| || ||  ||||||||||||| |||||||    
T  45266975 atatgtgtggtataaatgggtcacaccgaatacattatattatttcacacttctcaatcatttaaaccactaaactagcattttctaaatattcatacca 45266876  T
Q  160 c 160  Q
    |    
T  45266875 c 45266875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 5e-59; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 45 - 273
Target Start/End: Original strand, 32485437 - 32485656
Alignment:
Q  45 ccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcactttt-ttcattatttaaaccactcaattatatttt 143  Q
    ||||||||||||||| ||||| |||||||| ||||||| ||||||||||||||||||||||||||  || || ||||||||||||||| |         |    
T  32485437 ccacatccataccactcatatcggtggtatcaatgggtcccacataatacattatattacttcacgcttcttaattatttaaaccactta---------t 32485527  T
Q  144 ctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaatatgtactttaaatgggtcc-ataaattaattacattgtattgc 242  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||| |||| |||  ||||||||| ||||| |||||||||||||||||||||||    
T  32485528 ctaaatatccataccactcctccaaaactctaaaatgggtcccacttatcgtacactat--actttaaataggtcccataaattaattacattgtattgc 32485625  T
Q  243 tttttcatattttgattctatatagtattat 273  Q
    |||||||||||||||||||||| ||||||||    
T  32485626 tttttcatattttgattctatagagtattat 32485656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 33 - 202
Target Start/End: Complemental strand, 48253018 - 48252848
Alignment:
Q  33 ttctaagagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccact 131  Q
    |||| ||||||||||||||||| ||||||||||| || |||||||||||| ||| ||||||  ||||||||||||||  ||| | |||||||||||||||    
T  48253018 ttcttagagcacccacatccatgccacccatatgagtagtataaatgggtcccatataatattttatattacttcacactttccaattatttaaaccact 48252919  T
Q  132 caattata-ttttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaatat 202  Q
    ||| || | |||||||||||||||||||||| || ||||||| |||||| ||| ||||| ||||| ||||||    
T  48252918 caactacatttttctaaatatccataccact-ctccaaaactctaaaataggtaccactaatcttccaatat 48252848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 181
Target Start/End: Complemental strand, 44396513 - 44396369
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactcaatt 136  Q
    |||||| |||||||||| ||||||| |||| ||||||||||||| ||||||||||| |||||||||||| ||  ||  | ||||||||| |||||||| |    
T  44396513 agagcaaccacatccatgccacccaaatggatggtataaatgggatccacataatatattatattactttacacttcccaattatttaacccactcaact 44396414  T
Q  137 atattttctaaatatccataccactccttcaaaactttaaaatgg 181  Q
    | ||||||||||||| ||||||||||||  |||||| ||||||||    
T  44396413 acattttctaaatattcataccactcctctaaaactctaaaatgg 44396369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 187
Target Start/End: Complemental strand, 43692676 - 43692526
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactcaatt 136  Q
    |||||| ||| || |||||||| ||| ||  |||||||||| ||| |||||||||||||||||||| |||||  || ||| ||||||||||||||||  |    
T  43692676 agagcatccatattcataccactcatttgaatggtataaataggtcccacataatacattatattatttcacacttctcaattatttaaaccactcatct 43692577  T
Q  137 atattttctaaatatccataccactccttcaaaactttaaaatgggtccca 187  Q
    | ||||| |||||||  ||||||||| |  |||||||||||||||||||||    
T  43692576 aaattttttaaatatttataccactcttctaaaactttaaaatgggtccca 43692526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 36118086 - 36118156
Alignment:
Q  117 attatttaaaccactcaattatattttctaaatatccataccactccttcaaaactttaaaatgggtcccac 188  Q
    ||||||||||||||||||||| ||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  36118086 attatttaaaccactcaattacattttctaaatattcatactact-cttcaaaactttaaaatgggtcccac 36118156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 39 - 185
Target Start/End: Complemental strand, 36725915 - 36725768
Alignment:
Q  39 gagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactcaatta 137  Q
    ||||| ||||||||||||||| || ||||||||||||||||| | |||| |||| | |||||||| || ||  || ||| ||||||||||||||||| ||    
T  36725915 gagcatccacatccataccactcacatgggtggtataaatggatcccacttaattctttatattattttacacttctcaattatttaaaccactcaacta 36725816  T
Q  138 tattttctaaatatccataccactccttcaaaactttaaaatgggtcc 185  Q
     | ||||||||||| ||||||| || |  |||||| ||||||||||||    
T  36725815 caatttctaaatattcataccattcatcaaaaactctaaaatgggtcc 36725768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 36 - 202
Target Start/End: Original strand, 49080736 - 49080902
Alignment:
Q  36 taagagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactcaa 134  Q
    |||||||||||||||||||  || ||||||| || ||||||||||||   |||||||| |||||||||||||||  ||||| |||||||||||||||  |    
T  49080736 taagagcacccacatccatgtcatccatatgagttgtataaatgggtcttacataatatattatattacttcacacttttcaattatttaaaccact-ta 49080834  T
Q  135 ttatattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaatat 202  Q
     || ||||| |||||||| |||| | || |  || ||| |||||||||||||| | ||||||||||||    
T  49080835 ctacattttttaaatatcaatactaatcttctaatactctaaaatgggtcccattaatcttacaatat 49080902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 67 - 196
Target Start/End: Original strand, 8404748 - 8404877
Alignment:
Q  67 ggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactcaattatattttctaaatatccataccactcctt 165  Q
    ||||| |||||||||| |||| |||||| |||||||| |||||  ||| || |||||||||||||||||||| ||||| |||||||||| ||||||| |     
T  8404748 ggtggaataaatgggtcccacgtaatactttatattatttcacactttccaattatttaaaccactcaattacattttttaaatatccacaccactctta 8404847  T
Q  166 caaaactttaaaatgggtcccacttatctta 196  Q
    | |||| ||| ||||| ||||||| ||||||    
T  8404848 cgaaac-ttacaatggatcccactaatctta 8404877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 48 - 177
Target Start/End: Complemental strand, 49081352 - 49081222
Alignment:
Q  48 catccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactcaattatattttcta 146  Q
    |||||||||||||||||| | ||||||||||||||  || |||||||||||||||| || |  |||||| |||||||||| || |||  || ||||||||    
T  49081352 catccataccacccatatagatggtataaatgggtctcatataatacattatattattttatatttttcaattatttaaatcattcatctacattttcta 49081253  T
Q  147 aatatccataccactccttcaaaactttaaa 177  Q
    |||||  ||||||||| |  |||||||||||    
T  49081252 aatatttataccactcatctaaaactttaaa 49081222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 202
Target Start/End: Complemental strand, 43598922 - 43598786
Alignment:
Q  67 ggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactcaattatattttctaaatatccataccactcctt 165  Q
    ||||||||||||||   | || ||||| ||||||||| |||||  || ||| ||||||||||||||||| ||||||||  |||||| |||||||||| |     
T  43598922 ggtggtataaatggaccctacttaatatattatattagttcacacttctcaattatttaaaccactcaactatatttttcaaatattcataccactcatc 43598823  T
Q  166 caaaactttaaaatgggtcccacttatcttacaatat 202  Q
     |||||||||||||| ||| ||||||| | |||||||    
T  43598822 taaaactttaaaatgagtctcacttatttcacaatat 43598786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 188
Target Start/End: Original strand, 38346378 - 38346530
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacatta-tattacttcac-ttttttcattatttaaaccactcaat 135  Q
    |||||| ||||||||||| || ||| || | ||||||||||||   ||| |||||| || | ||||||||||  |||||| ||||||||||||||||||     
T  38346378 agagcatccacatccatatcatccacattgatggtataaatggaccccatataatatataaatattacttcatattttttaattatttaaaccactcaac 38346477  T
Q  136 tatattttctaaatatccataccactccttcaaaactttaaaatgggtcccac 188  Q
    || ||||| |||||||  |||| |||| |  ||||||||||| ||||||||||    
T  38346478 tacattttttaaatatttatacaactcatctaaaactttaaattgggtcccac 38346530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 189
Target Start/End: Complemental strand, 46700980 - 46700826
Alignment:
Q  36 taagagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactcaa 134  Q
    ||||||||  |||||||||  || ||||||| || |||||||||| |  ||| |||| | ||||| || |||||  || ||| ||||||||||||||  |    
T  46700980 taagagcatacacatccatgtcatccatatgagttgtataaatggctctcacttaattctttatactatttcacacttctcaattatttaaaccactata 46700881  T
Q  135 ttatattttctaaatatccataccactccttcaaaactttaaaatgggtcccact 189  Q
    ||||||||||||||||| ||||| |||| |||||||  ||| ||||| |||||||    
T  46700880 ttatattttctaaatattcatactactcattcaaaaaattacaatggatcccact 46700826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 177
Target Start/End: Original strand, 35034334 - 35034421
Alignment:
Q  90 aatacattatattacttcacttttttcattatttaaaccactcaattatattttctaaatatccataccactccttcaaaactttaaa 177  Q
    |||||||||||||||||||  ||||| |||||||||| ||| |||  |||||| |||||||| ||||| | || | ||||||||||||    
T  35034334 aatacattatattacttcatgtttttaattatttaaatcacccaaccatatttcctaaatattcatacaattcttccaaaactttaaa 35034421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 200
Target Start/End: Complemental strand, 40160387 - 40160304
Alignment:
Q  117 attatttaaaccactcaattatattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaat 200  Q
    ||||||||||| |||||| || | ||| ||||||||||||| || | | ||||| |||||||||| ||||||| ||||||||||    
T  40160387 attatttaaacaactcaactaaaatttttaaatatccatactacccatccaaaattttaaaatggatcccactaatcttacaat 40160304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 162
Target Start/End: Complemental strand, 23870005 - 23869939
Alignment:
Q  97 tatattacttcacttttttca-ttatttaaaccactcaattatattttctaaatatccataccactc 162  Q
    |||||||||||||  |||||| || ||||||| ||| || |||||||||||||||||||||||||||    
T  23870005 tatattacttcacacttttcaattttttaaactacttaactatattttctaaatatccataccactc 23869939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 41159471 - 41159549
Alignment:
Q  139 attttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaatatgtactttaaatgggtcc 219  Q
    |||||||||||||||||||||| | | ||||||| | ||||||||||||   |||| ||||||  |||| |||||||||||    
T  41159471 attttctaaatatccataccacccatccaaaactctcaaatgggtcccataaatctcacaata--tactctaaatgggtcc 41159549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 159
Target Start/End: Original strand, 12879285 - 12879349
Alignment:
Q  96 ttatattacttcacttttttca-ttatttaaaccactcaattatattttctaaatatccatacca 159  Q
    ||||||||||||||  || ||| |||||||||| || ||| |||||||||||||||| |||||||    
T  12879285 ttatattacttcacacttctcaattatttaaacaacacaactatattttctaaatattcatacca 12879349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 36 - 201
Target Start/End: Original strand, 39060167 - 39060333
Alignment:
Q  36 taagagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactcaa 134  Q
    ||||||||||||||| |||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||  ||||| ||||||||||||||||||    
T  39060167 taagagcacccacatacatatcacctatatgggtggtataaatgggtcccacataatacattatattacttcacacttttcgattatttaaaccactcaa 39060266  T
Q  135 ttatattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaata 201  Q
     ||||||||||||||||||||| |||||||  ||||||||||||| |||||||||||||||||||||    
T  39060267 ctatattttctaaatatccatatcactcctctaaaactttaaaataggtcccacttatcttacaata 39060333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 34 - 202
Target Start/End: Complemental strand, 34769698 - 34769529
Alignment:
Q  34 tctaagagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactc 132  Q
    |||||||||| |||||||||| ||| |||| ||||||||||||| |||| ||||||||||||||||||||| ||||  ||  | ||||||||||||| ||    
T  34769698 tctaagagcatccacatccatgccatccatttgggtggtataaacgggtcccacataatacattatattacctcacacttcccaattatttaaaccattc 34769599  T
Q  133 aattatattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaatat 202  Q
    || || ||||| |||||||||||||||| | ||  ||||| |||||||||||||||| |||| |||||||    
T  34769598 aactacattttttaaatatccataccacccattataaactctaaaatgggtcccactaatctcacaatat 34769529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 198
Target Start/End: Complemental strand, 9959445 - 9959282
Alignment:
Q  35 ctaagagcacccacatccataccaccc-atatgggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactc 132  Q
    ||||||||||||||||||||  ||| | | ||||||||||||||||||| |||| |||||| ||||| ||||||||  ||| || |||||||||| ||||    
T  9959445 ctaagagcacccacatccatgtcactctacatgggtggtataaatgggt-ccacgtaatactttatactacttcacactttccaattatttaaactactc 9959347  T
Q  133 aattatattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttaca 198  Q
    || || |||||||||||||||||||| ||  | ||||| |||| ||||||||||||| ||||||||    
T  9959346 aactacattttctaaatatccataccgctattacaaaa-tttacaatgggtcccactaatcttaca 9959282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 38 - 160
Target Start/End: Original strand, 10523804 - 10523927
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcac-ttttttcattatttaaaccactcaatt 136  Q
    |||||||||||||||||  ||||||||| ||||||||||||||   ||||  |||||||||||||| || ||  ||||| ||||||||||||||||| ||    
T  10523804 agagcacccacatccatgtcacccatattggtggtataaatggaccccactcaatacattatattattttacactttttaattatttaaaccactcactt 10523903  T
Q  137 atattttctaaatatccataccac 160  Q
    | ||||||||||||| ||||||||    
T  10523904 acattttctaaatattcataccac 10523927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 97 - 202
Target Start/End: Original strand, 4925098 - 4925204
Alignment:
Q  97 tatattacttcacttttttca-ttatttaaaccactcaattatattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatctt 195  Q
    |||||||||||||  |||||| ||||||||||||||||| || ||||| |||||||||||| ||||| | ||||||| |||||| |||| ||||||||||    
T  4925098 tatattacttcacacttttcaattatttaaaccactcaactacattttttaaatatccatatcactcttccaaaactctaaaataggtctcacttatctt 4925197  T
Q  196 acaatat 202  Q
    |||||||    
T  4925198 acaatat 4925204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 218 - 273
Target Start/End: Original strand, 16328130 - 16328185
Alignment:
Q  218 ccataaattaattacattgtattgctttttcatattttgattctatatagtattat 273  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  16328130 ccataaattaattacattgtattgctttctcatattttgattctatatagtattat 16328185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 188
Target Start/End: Original strand, 14593851 - 14593988
Alignment:
Q  52 cataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactcaattatattttctaaata 150  Q
    |||| ||||||||||  ||||||||||||  |||||  |||| |||||||||||||||   | || ||||||||||||| ||||||| ||||| ||||||    
T  14593851 catatcacccatatgaatggtataaatggactccactcaatatattatattacttcacaaatctcaattatttaaaccattcaattacattttataaata 14593950  T
Q  151 tccataccactccttcaaaactttaaaatgggtcccac 188  Q
    | |||||||||| |||| |||| |||||| ||||||||    
T  14593951 ttcataccactctttcataactgtaaaataggtcccac 14593988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 35205242 - 35205312
Alignment:
Q  129 actcaattatattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaa 199  Q
    ||||||||| |||||||||||||||||||||||||   |||||| |||||||| |||||||||||||||||    
T  35205242 actcaattacattttctaaatatccataccactcccctaaaactctaaaatggctcccacttatcttacaa 35205312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 35211909 - 35211839
Alignment:
Q  129 actcaattatattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaa 199  Q
    ||||||||| |||||||||||||||||||||||||   |||||| |||||||| |||||||||||||||||    
T  35211909 actcaattacattttctaaatatccataccactcccctaaaactctaaaatggctcccacttatcttacaa 35211839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 4924779 - 4924839
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacatta 98  Q
    |||||| |||||||||| |||||||||||||||||||||||| || |||||||||||||||    
T  4924779 agagcaaccacatccatgccacccatatgggtggtataaatgagtcccacataatacatta 4924839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 189
Target Start/End: Complemental strand, 23089426 - 23089298
Alignment:
Q  62 atatgggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactcaattatattttctaaatatccataccac 160  Q
    |||||| |||||||||||| | ||| |||||| ||||||||| ||||| |||| || ||||||||| ||||||   | ||||| ||||||| ||||||||    
T  23089426 atatggatggtataaatggatcccatataatatattatattatttcacattttccaattatttaaatcactcatccacattttttaaatattcataccac 23089327  T
Q  161 tccttcaaaactttaaaatgggtcccact 189  Q
    || |  |||||||||||||| ||||||||    
T  23089326 tcatctaaaactttaaaatgagtcccact 23089298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 160
Target Start/End: Original strand, 14913434 - 14913556
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactcaatt 136  Q
    |||||||||| | ||||||||  ||||||||||||||||||||||   ||  |||||||||||||| || ||  |||||| |||||||||| ||| || |    
T  14913434 agagcacccaga-ccataccattcatatgggtggtataaatgggtcatactaaatacattatattattttacacttttcaattatttaaactactaaact 14913532  T
Q  137 atattttctaaatatccataccac 160  Q
    ||||||||||||||| ||||||||    
T  14913533 atattttctaaatattcataccac 14913556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 202
Target Start/End: Original strand, 14947789 - 14947867
Alignment:
Q  124 aaaccactcaattatattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaatat 202  Q
    |||| ||||||||||||||| ||||||| |||||||||| | |||||||||||||| || | |||| ||||||||||||    
T  14947789 aaactactcaattatattttttaaatattcataccactcttccaaaactttaaaataggactcactaatcttacaatat 14947867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 35205123 - 35205191
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattactt 106  Q
    |||||||||| |||||| ||||||| || |||||||||||||||| ||||||| || ||||||||||||    
T  35205123 agagcacccaaatccatgccacccaaataggtggtataaatgggtcccacatattatattatattactt 35205191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 37902513 - 37902442
Alignment:
Q  35 ctaagagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattactt 106  Q
    ||||||||| |||||||||| |||||||||| ||||||||||||| |  |||||| ||| ||||||||||||    
T  37902513 ctaagagcaaccacatccatgccacccatattggtggtataaatgagacccacattatatattatattactt 37902442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 35212036 - 35211939
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactcaa 134  Q
    |||||| |||||| ||| ||||||| || |||||||||||||||| ||||||| || |||||||||||| ||  ||  || |||||||||||||||||    
T  35212036 agagcatccacattcatgccacccaaataggtggtataaatgggtcccacatattatattatattactttacacttcccagttatttaaaccactcaa 35211939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 157
Target Start/End: Complemental strand, 34383826 - 34383704
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacata--atacattatattacttcacttttttc-attatttaaaccactcaa 134  Q
    |||||| |||||||||| ||| ||| |||| |||||||||| || ||||||||  ||| |||||||||||| ||  || || ||||||||||||||  ||    
T  34383826 agagcaaccacatccatgccatccaaatggatggtataaataggatccacataatatatattatattactttacacttctcaattatttaaaccacaaaa 34383727  T
Q  135 ttatattttctaaatatccatac 157  Q
     || |||||||||||||| ||||    
T  34383726 ctacattttctaaatatctatac 34383704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 38698288 - 38698221
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattact 105  Q
    |||||| |||||||||||| || |||||| ||||||||||||| | ||||  ||||||||||||||||    
T  38698288 agagcatccacatccatactactcatatgagtggtataaatggatcccactgaatacattatattact 38698221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 180
Target Start/End: Complemental strand, 10923789 - 10923727
Alignment:
Q  118 ttatttaaaccactcaattatattttctaaatatccataccactccttcaaaactttaaaatg 180  Q
    ||||| ||||||||||| |||||||||| ||||| ||||||||||||  |||| |||||||||    
T  10923789 ttattcaaaccactcaactatattttcttaatattcataccactcctctaaaattttaaaatg 10923727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 14947657 - 14947724
Alignment:
Q  39 gagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattactt 106  Q
    ||||||||||||||||  || |||||| | |||||||||||| | ||||||||||  |||||||||||    
T  14947657 gagcacccacatccatgtcatccatatagatggtataaatggatcccacataatattttatattactt 14947724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 38697948 - 38697882
Alignment:
Q  117 attatttaaaccactcaattatattttctaaatatccataccactccttcaaaactttaaaatgggtc 184  Q
    |||||||||||| ||||| || ||||| ||||||||||||| ||| |||||||| ||| |||||||||    
T  38697948 attatttaaacctctcaactaaattttttaaatatccatactact-cttcaaaattttcaaatgggtc 38697882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 35470383 - 35470325
Alignment:
Q  105 ttcacttttttca-ttatttaaaccactcaattatattttctaaatatccataccactc 162  Q
    ||||| ||||||| |||||||||| |||||| |||||||||||||||| ||||| ||||    
T  35470383 ttcacatttttcaattatttaaactactcaactatattttctaaatattcatactactc 35470325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 157
Target Start/End: Complemental strand, 23090788 - 23090679
Alignment:
Q  49 atccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactcaattatattttctaa 147  Q
    |||||||||| ||||||  |||||| |||| ||| |||||||||||| ||||||| || ||  ||| | ||||||||||||||||  |||  |||| |||    
T  23090788 atccataccatccatattagtggtaaaaattggtcccacataatacaatatattattttacactttccaattatttaaaccactctcttaccttttttaa 23090689  T
Q  148 atatccatac 157  Q
    |||| |||||    
T  23090688 atattcatac 23090679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 38744671 - 38744731
Alignment:
Q  136 tatattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatctta 196  Q
    |||||||| ||||||| |||||||||| |  ||||||||||||||||| | ||| ||||||    
T  38744671 tatattttttaaatattcataccactcatctaaaactttaaaatgggttctactaatctta 38744731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 34 - 201
Target Start/End: Complemental strand, 56717 - 56549
Alignment:
Q  34 tctaagagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactc 132  Q
    |||||||||| |||||||||| ||| ||| |||| |||||||||||||  |||||||||| |||||||||||| ||  || ||| |||||||||||||||    
T  56717 tctaagagcaaccacatccatgccatccaaatggatggtataaatgggacccacataatatattatattactttacacttctcaattatttaaaccactc 56618  T
Q  133 aattatattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaata 201  Q
    || || ||||||||||||||||||||||||||  |||||| ||| ||||||||||||||||||||||||    
T  56617 aactacattttctaaatatccataccactcctctaaaactctaatatgggtcccacttatcttacaata 56549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 6e-43; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 39 - 202
Target Start/End: Original strand, 6858965 - 6859129
Alignment:
Q  39 gagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactcaatta 137  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||  ||  | ||||||||||||||| || ||    
T  6858965 gagcatccacatccataccacccatatgggtggtataaatgggtcccacgtaatacaatatattacttcacacttcccaattatttaaaccactaaacta 6859064  T
Q  138 tattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaatat 202  Q
    |||||||||||||||||| |||||  |  ||||||||||||| |||| |||||||||||||||||    
T  6859065 tattttctaaatatccatgccacttttcaaaaactttaaaataggtctcacttatcttacaatat 6859129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 35 - 202
Target Start/End: Complemental strand, 32914587 - 32914419
Alignment:
Q  35 ctaagagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactca 133  Q
    ||||||||||||||||||||  || ||||||| || |||||||||||| ||| ||||||  ||||||||||||||  ||||| |||||||||||||||||    
T  32914587 ctaagagcacccacatccatgtcatccatatgagtagtataaatgggtcccatataatattttatattacttcacacttttcaattatttaaaccactca 32914488  T
Q  134 attata-ttttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaatat 202  Q
    | || | |||||||||||||||||||||| ||  |||||| |||||| ||||||||| ||||||||||||    
T  32914487 actacatttttctaaatatccataccact-ctcaaaaactctaaaataggtcccactaatcttacaatat 32914419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 38 - 202
Target Start/End: Complemental strand, 39375833 - 39375668
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactcaatt 136  Q
    |||||| |||||| ||| ||| |||||||| || |||||||| ||  || |||||| ||||||||||||||  |||| || ||||||||||||||||| |    
T  39375833 agagcaaccacatacatgccatccatatggatgatataaatgagtctcatataatatattatattacttcatattttccaattatttaaaccactcaact 39375734  T
Q  137 atattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaatat 202  Q
    ||||||| ||||||||||||||| |||| ||||| |||||||  ||||||||||||||||||||||    
T  39375733 atattttttaaatatccataccattcctccaaaattttaaaacaggtcccacttatcttacaatat 39375668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 38 - 201
Target Start/End: Original strand, 33386646 - 33386805
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactcaatt 136  Q
    |||||| |||||||||| ||||||| ||| ||||||||||||||  ||||||||||     |||||||| ||  ||  || |||||||||||||||||||    
T  33386646 agagcaaccacatccatgccacccaaatgagtggtataaatgggacccacataata-----tattactttacaattcccaattatttaaaccactcaatt 33386740  T
Q  137 atattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaata 201  Q
      ||||||||||||| ||||||||||||  |||||| ||||||||||||||||||||||||||||    
T  33386741 gcattttctaaatattcataccactcctctaaaactctaaaatgggtcccacttatcttacaata 33386805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 45 - 188
Target Start/End: Complemental strand, 38610036 - 38609893
Alignment:
Q  45 ccacatccataccacccatatgggtggtataaatgggttccacataatacattatattactt--cacttttttcattatttaaaccactcaattatattt 142  Q
    |||||||||||||||| |||| | |||||||||||| |  |||  |||| ||||||||| ||  |||||| || ||||||||||||||||||||||||||    
T  38610036 ccacatccataccacctatattgatggtataaatggatctcactgaatatattatattattttacactttctt-attatttaaaccactcaattatattt 38609938  T
Q  143 tctaaatatccataccactccttcaaaactttaaaatgggtcccac 188  Q
    ||||||||||||||| ||| || |||||||||||||||||||||||    
T  38609937 tctaaatatccatactact-ctccaaaactttaaaatgggtcccac 38609893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 188
Target Start/End: Complemental strand, 3739615 - 3739461
Alignment:
Q  34 tctaagagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcac-ttttttcattatttaaaccactc 132  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||| | |||   ||||||||||||||  ||||  ||| | |||||||||||||||     
T  3739615 tctaagagcatccacatccataccacccatatggatggtataaatggatcccattgaatacattatattatctcacactttcttattatttaaaccactt 3739516  T
Q  133 aattatattttctaaatatccataccactccttcaaaactttaaaatgggtcccac 188  Q
    || || ||||||||||||||||||  ||| || ||||| |||||||||| ||||||    
T  3739515 aactacattttctaaatatccataatact-ctccaaaattttaaaatggatcccac 3739461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 202
Target Start/End: Original strand, 9104543 - 9104708
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactcaatt 136  Q
    |||||||| ||||||||  ||| ||||||||||||||||||||||  ||  |||||  |||||||| |||||  || ||| ||||||||||||||||| |    
T  9104543 agagcacctacatccatctcactcatatgggtggtataaatgggtctcatctaatattttatattatttcacaattctcaattatttaaaccactcaact 9104642  T
Q  137 atattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaatat 202  Q
    | ||||| |||||||| ||||||||| |  |||| |||||||||||| ||| | ||||||||||||    
T  9104643 acattttttaaatatctataccactcttctaaaattttaaaatgggttccattaatcttacaatat 9104708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 62 - 182
Target Start/End: Complemental strand, 14657612 - 14657492
Alignment:
Q  62 atatgggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactcaattatattttctaaatatccataccac 160  Q
    ||||||||||||||||||| |  ||||||||||||||||||| |||||  ||| || ||||||||||||||||| || ||||||||||||| |||| |||    
T  14657612 atatgggtggtataaatgg-tcacacataatacattatattatttcacactttccaattatttaaaccactcaactacattttctaaatattcatatcac 14657514  T
Q  161 tccttcaaaactttaaaatggg 182  Q
    | || ||||||| |||||||||    
T  14657513 tgctccaaaactctaaaatggg 14657492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 36 - 188
Target Start/End: Complemental strand, 37070029 - 37069875
Alignment:
Q  36 taagagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactcaa 134  Q
    |||||||| |||||||||| |||||||| |||||||||||||||||| |||||||||| | ||||||| || ||  ||  | ||||||||||||||||      
T  37070029 taagagcatccacatccatgccacccatttgggtggtataaatgggtcccacataatataatatattattttacacttcccaattatttaaaccactctc 37069930  T
Q  135 ttata-ttttctaaatatccataccactccttcaaaactttaaaatgggtcccac 188  Q
    ||| | |||| ||||||||||||| |||| |  |||| |||||| ||||||||||    
T  37069929 ttacatttttttaaatatccatactactcatctaaaattttaaagtgggtcccac 37069875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 38 - 131
Target Start/End: Complemental strand, 7395550 - 7395456
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccact 131  Q
    |||||||||| |||||| |||| ||||||||| |||||||||||| |||| |||||  ||||||||||||||  ||||| |||||||||||||||    
T  7395550 agagcacccatatccatgccactcatatgggtagtataaatgggtcccacctaatattttatattacttcacacttttcaattatttaaaccact 7395456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 95 - 189
Target Start/End: Complemental strand, 8322240 - 8322145
Alignment:
Q  95 attatattacttcacttttttca-ttatttaaaccactcaattatattttctaaatatccataccactccttcaaaactttaaaatgggtcccact 189  Q
    |||||||||||||||  |||||| |||||||||||||||||||| |||||  |||||| |||||||||| | ||||||| ||||||  ||||||||    
T  8322240 attatattacttcacacttttcaattatttaaaccactcaattacatttttcaaatattcataccactcatccaaaactctaaaataagtcccact 8322145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 4897342 - 4897252
Alignment:
Q  62 atatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactcaattatattttctaaatat 151  Q
    |||| |||||||||||||| |  || |||||| |||| |||||||||| |||||| ||||||||||| |||||| || |||||||||||||    
T  4897342 atataggtggtataaatggatcacatataatatattacattacttcacatttttcaattatttaaactactcaactacattttctaaatat 4897252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 4944736 - 4944646
Alignment:
Q  62 atatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactcaattatattttctaaatat 151  Q
    |||| |||||||||||||| |  || |||||| |||| |||||||||| |||||| ||||||||||| |||||| || |||||||||||||    
T  4944736 atataggtggtataaatggatcacatataatatattacattacttcacatttttcaattatttaaactactcaactacattttctaaatat 4944646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 188
Target Start/End: Original strand, 5147101 - 5147226
Alignment:
Q  63 tatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactcaattatattttctaaatatccataccact 161  Q
    |||||||||||| ||||||||||||  |||| |||||||||  ||||  ||  | |||||||||| || |||| || ||||||||||||| ||||| |||    
T  5147101 tatgggtggtatgaatgggttccactgaatatattatattatctcacacttccctattatttaaatcattcaactacattttctaaatattcatactact 5147200  T
Q  162 ccttcaaaactttaaaatgggtcccac 188  Q
     || ||||||||||||| |||||||||    
T  5147201 -ctccaaaactttaaaacgggtcccac 5147226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 37258122 - 37258198
Alignment:
Q  33 ttctaagagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcac 109  Q
    ||||||||||| ||||||||||  ||| ||||||| ||||||||||||||  || |||||| ||||||||| |||||    
T  37258122 ttctaagagcatccacatccatgtcactcatatggatggtataaatgggtctcatataatatattatattatttcac 37258198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 162
Target Start/End: Complemental strand, 18565843 - 18565740
Alignment:
Q  60 ccatatgggtggtataaatgggttccacataatacattatattac-ttcacttttttcattatttaaaccactcaattatattttctaaatatccatacc 158  Q
    ||||||| |||||||||||||||  || ||||||||||||||||| |||   || |  ||||||||||  |||||| || ||||| ||||||||||||||    
T  18565843 ccatatgagtggtataaatgggtctcatataatacattatattactttcgacttctcaattatttaaatgactcaactacattttttaaatatccatacc 18565744  T
Q  159 actc 162  Q
    ||||    
T  18565743 actc 18565740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 29794468 - 29794379
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaa 126  Q
    |||||| ||| ||||||||||| ||| | ||||||||||||||  ||||| ||||| ||||||||| |||||  ||||| ||||||||||    
T  29794468 agagcatccatatccataccacacattttggtggtataaatggactccacctaatatattatattatttcacacttttcgattatttaaa 29794379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 168
Target Start/End: Complemental strand, 8443269 - 8443218
Alignment:
Q  117 attatttaaaccactcaattatattttctaaatatccataccactccttcaa 168  Q
    ||||||||||| ||||||||||||||| |||||||| |||| |||| |||||    
T  8443269 attatttaaactactcaattatattttttaaatatcaatactactcattcaa 8443218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 7395020 - 7394958
Alignment:
Q  126 accactcaattatattttctaaatatccataccactccttcaaaactttaaaatgggtcccac 188  Q
    |||||||| ||| |||||  |||||||||||| |||| | ||||||| |||||||||||||||    
T  7395020 accactcatttacatttttcaaatatccatacaactcatccaaaactctaaaatgggtcccac 7394958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 189
Target Start/End: Original strand, 3384732 - 3384804
Alignment:
Q  117 attatttaaaccactcaattatattttctaaatatccataccactccttcaaaactttaaaatgggtcccact 189  Q
    ||||||||||| | |||| || ||||| ||||||| |||| ||||| |  |||| ||||||||||||||||||    
T  3384732 attatttaaacaattcaactacattttataaatattcatatcactcatcaaaaaatttaaaatgggtcccact 3384804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 177
Target Start/End: Complemental strand, 3739965 - 3739849
Alignment:
Q  62 atatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactcaattatattttctaaatatccataccac 160  Q
    |||||| |||||||||| |||  ||||||||||||||||||| || |  |||||| |||||||||| || |||  || || ||||||||||  ||||||     
T  3739965 atatggatggtataaataggtctcacataatacattatattattttatatttttcaattatttaaatcattcatctacatattctaaatatttataccat 3739866  T
Q  161 tccttcaaaactttaaa 177  Q
    || |  |||||||||||    
T  3739865 tcatctaaaactttaaa 3739849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 40095887 - 40095791
Alignment:
Q  67 ggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactcaattatattttctaaatatccataccactc 162  Q
    ||||||||||||||   |||  ||||| |||||||||||| ||  || ||| |||||||||| |||||| || ||||| ||||||| ||||||||||    
T  40095887 ggtggtataaatggaccccatctaatatattatattactttacacttctcaattatttaaactactcaactacattttttaaatattcataccactc 40095791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 9e-39; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 39 - 199
Target Start/End: Complemental strand, 40279089 - 40278928
Alignment:
Q  39 gagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactcaatta 137  Q
    |||||||||||| ||| ||||||| ||| ||||||||||||||  |||||||||| |||||||||||| |   ||| || ||||||||||||||||| ||    
T  40279089 gagcacccacattcatgccacccaaatgagtggtataaatgggacccacataatatattatattactttatactttccaattatttaaaccactcaacta 40278990  T
Q  138 tattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaa 199  Q
     |||||||||||||||||||||||||   |||||| ||||||||||||||||||||||||||    
T  40278989 cattttctaaatatccataccactccactaaaactctaaaatgggtcccacttatcttacaa 40278928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 38 - 202
Target Start/End: Complemental strand, 1156398 - 1156233
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactcaatt 136  Q
    |||||| |||||||||||||||||||||| |||||||||||||||  ||| ||||||| ||||||| |||||  ||  | ||||||||||||||| || |    
T  1156398 agagcatccacatccataccacccatatgagtggtataaatgggtctcacgtaatacaatatattatttcacacttcccaattatttaaaccactaaact 1156299  T
Q  137 atattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaatat 202  Q
    |||| ||||||||||||||||||||| | ||||| |||||||| |||| |||| ||||||||||||    
T  1156298 atatcttctaaatatccataccactcttccaaaattttaaaataggtctcactcatcttacaatat 1156233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 38 - 202
Target Start/End: Complemental strand, 9682485 - 9682321
Alignment:
Q  38 agagcacccacatccataccaccc-atatgggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactcaat 135  Q
    |||| |||||||||||| |||| | | ||||||||||||||||||| |||  |||||| ||||||||||||||  |||||| |||||||||||||||||     
T  9682485 agaggacccacatccatgccactctacatgggtggtataaatgggtcccag-taatactttatattacttcacacttttcaattatttaaaccactcaac 9682387  T
Q  136 tatattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaatat 202  Q
    || |||||||||| |||||||||| || | |||||| ||| ||||||||||||| ||||||||||||    
T  9682386 tacattttctaaacatccataccattcttacaaaac-ttataatgggtcccactaatcttacaatat 9682321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 33 - 202
Target Start/End: Complemental strand, 18227130 - 18226960
Alignment:
Q  33 ttctaagagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccact 131  Q
    |||| |||||| |||||||||| |||||||| ||||||||||||| |||| ||||||||||||||||||||| ||||  ||  | |||||||||||||      
T  18227130 ttcttagagcatccacatccatgccacccatttgggtggtataaacgggtcccacataatacattatattacctcacacttcccaattatttaaaccatc 18227031  T
Q  132 caattatattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaatat 202  Q
    ||| || ||||| |||||||||||||||| | ||  ||||| |||||||| ||||||| |||| |||||||    
T  18227030 caactacattttttaaatatccataccacccattataaactctaaaatggatcccactaatctcacaatat 18226960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 33 - 202
Target Start/End: Complemental strand, 17312982 - 17312813
Alignment:
Q  33 ttctaagagcacccacatccataccaccc-atatgggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccac 130  Q
    |||| ||||||||||||||||| |||| | | |||| ||||||||||||||  ||  |||||| ||||||||||||||  |||||| |||||||||||||    
T  17312982 ttcttagagcacccacatccatgccactctacatggatggtataaatgggtctcag-taatactttatattacttcacacttttcaattatttaaaccac 17312884  T
Q  131 tcaattatattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaatat 202  Q
    |||| || || |||||||||||||||||| || | ||||| |||| ||||||||||||| ||||||||||||    
T  17312883 tcaactacatcttctaaatatccataccattcttacaaaa-tttataatgggtcccactaatcttacaatat 17312813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 201
Target Start/End: Original strand, 11425461 - 11425622
Alignment:
Q  40 agcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactcaattat 138  Q
    |||| |||||||||| ||||||| |||| ||||||||||||| ||||||||||| |||||||||||| ||  ||  | ||||||||| | |||||| ||     
T  11425461 agcaaccacatccatgccacccaaatggatggtataaatgggatccacataatatattatattactttacacttcccaattatttaaccgactcaactac 11425560  T
Q  139 attttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaata 201  Q
    ||||||||||||| |||| |||||||  |||||| ||||||||||||  ||||||||||||||    
T  11425561 attttctaaatattcata-cactcctctaaaactctaaaatgggtcctgcttatcttacaata 11425622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 38 - 202
Target Start/End: Original strand, 35158845 - 35159010
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactcaatt 136  Q
    |||||| ||||||||||| ||| ||||||||||||||||||| ||   || ||||| |||||||||||  ||  ||  | |||||||||||||||||| |    
T  35158845 agagcatccacatccatatcactcatatgggtggtataaatgagtctgacttaatatattatattactggacacttcccaattatttaaaccactcaact 35158944  T
Q  137 atattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaatat 202  Q
    | ||||||||||||| ||||||| |  |   ||||| |||||| ||||||||| ||| ||||||||    
T  35158945 acattttctaaatattcataccatttttcgtaaactctaaaataggtcccactaatcgtacaatat 35159010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 196
Target Start/End: Complemental strand, 27594363 - 27594234
Alignment:
Q  67 ggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactcaattatattttctaaatatccataccactcctt 165  Q
    ||||| |||||||||| |||| |||| | |||||||| |||||   || || ||||||||||||||||| || ||||||||||||| |||||||||| |     
T  27594363 ggtggaataaatgggtcccacgtaattctttatattatttcacaccttccaattatttaaaccactcaactacattttctaaatattcataccactctta 27594264  T
Q  166 caaaactttaaaatgggtcccacttatctta 196  Q
    |||||| ||| ||||| ||||||| ||||||    
T  27594263 caaaac-ttacaatggatcccactaatctta 27594234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 191
Target Start/End: Complemental strand, 37479317 - 37479163
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactcaatt 136  Q
    |||||| |||||||||| ||||  |||||| |||||||||| |  ||||||||||| |||||||||||| |   ||||| |||||||||||||||||| |    
T  37479317 agagcaaccacatccatgccacttatatggatggtataaat-gaatccacataatatattatattactttaaacttttcaattatttaaaccactcaact 37479219  T
Q  137 ata-ttttctaaatatccataccactccttcaaaactttaaaatgggtcccactta 191  Q
    | | |||| ||||||||||||| |||| |  |||||| |||| ||  |||||||||    
T  37479218 acatttttttaaatatccatactactcatctaaaactctaaattgaatcccactta 37479163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 187
Target Start/End: Original strand, 45251430 - 45251579
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactcaatt 136  Q
    |||||| |||||||||| |  |||||||| |||||||||  |||| |||   | || ||||| ||| ||||| |||||| ||||||||||||||| || |    
T  45251430 agagcatccacatccatgctgcccatatgagtggtataagcgggtcccattgactaaattatgttatttcacatttttctattatttaaaccacttaaat 45251529  T
Q  137 atattttctaaatatccataccactccttcaaaactttaaaatgggtccca 187  Q
    | ||||| ||||||||||||| ||| ||  |||||| |||||| |||||||    
T  45251530 acattttttaaatatccatactact-ctctaaaactctaaaatcggtccca 45251579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 27107774 - 27107859
Alignment:
Q  67 ggtggtataaatgggttccacataatacattatattacttcacttttttcattatttaaaccactcaattatattttctaaatatc 152  Q
    |||||||||||||| |||||  ||||| | |||||||| ||||  || | |||| |||||| |||||| |||||||| ||||||||    
T  27107774 ggtggtataaatggattccatctaatataatatattacatcacacttctaattagttaaactactcaactatattttttaaatatc 27107859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 34954327 - 34954380
Alignment:
Q  98 atattacttcacttttttcattatttaaaccactcaattatattttctaaatat 151  Q
    |||||||||||  ||||| |||||||||||||||||| || ||||| |||||||    
T  34954327 atattacttcatatttttaattatttaaaccactcaactacattttttaaatat 34954380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 204
Target Start/End: Original strand, 19763539 - 19763679
Alignment:
Q  64 atgggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactcaattatattttctaaatatccataccactc 162  Q
    ||||||||||||| ||||| |||| |||||  ||||||||||||||  ||| || |||||||||||||| ||||| ||||||||||||| ||||||||||    
T  19763539 atgggtggtataactgggtcccacgtaatattttatattacttcacactttccaattatttaaaccacttaattacattttctaaatattcataccactc 19763638  T
Q  163 cttcaaaactttaaaatgggtcccacttatcttacaatatgt 204  Q
     | |||||| ||| ||||||| |||||  |||||||||||||    
T  19763639 ttacaaaac-ttacaatgggttccactattcttacaatatgt 19763679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 56 - 162
Target Start/End: Complemental strand, 2844243 - 2844136
Alignment:
Q  56 ccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactcaattatattttctaaatatcca 154  Q
    ||||| |||||||||||||||||| ||| |||||||||||||||||||||||||  ||  | |||||||||||||||||| || ||||| ||||||| ||    
T  2844243 ccaccgatatgggtggtataaatgagtttcacataatacattatattacttcacacttcccaattatttaaaccactcaactacattttttaaatattca 2844144  T
Q  155 taccactc 162  Q
    ||| ||||    
T  2844143 tactactc 2844136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 35 - 204
Target Start/End: Original strand, 19789199 - 19789369
Alignment:
Q  35 ctaagagcacccacatccataccaccc-atatgggtggtataaatgggttccacataatacattatattacttcacttttttca-ttatttaaaccactc 132  Q
    ||||||||||||||||| ||  ||| | | ||||||||||||| ||||| |||| |||||  |||||||||  |||  |||||| ||||||||| ||||     
T  19789199 ctaagagcacccacatctatgtcactctacatgggtggtataactgggtcccacgtaatattttatattacgccacacttttcaattatttaaatcactt 19789298  T
Q  133 aattatattttctaaatatccataccactccttcaaaactttaaaatgggtcccacttatcttacaatatgt 204  Q
    ||||| ||||||||||||| |||| ||||| | |||||| ||| |||||||||||||  |||||||||||||    
T  19789299 aattacattttctaaatattcatatcactcttacaaaac-ttacaatgggtcccactattcttacaatatgt 19789369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 139
Target Start/End: Original strand, 30775332 - 30775425
Alignment:
Q  47 acatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactcaattata 139  Q
    |||||||||  || ||||| |||||||||||||||| | ||||||||||||||||||||||||  ||||| |||||||||||||||||| ||||    
T  30775332 acatccatattacacatataggtggtataaatgggtcctacataatacattatattacttcacacttttcaattatttaaaccactcaactata 30775425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 189
Target Start/End: Complemental strand, 10682633 - 10682482
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactcaatt 136  Q
    |||||| |||||| ||| |||||||||||| |||| |||||||   |||| ||||| |||||||||||||||  || || |||||||||||||||||| |    
T  10682633 agagcatccacattcattccacccatatggatggtttaaatggaccccacttaatatattatattacttcacacttctcaattatttaaaccactcaact 10682534  T
Q  137 atattttctaaatatccataccactccttcaaaactttaaaatgggtcccact 189  Q
    | |||||  ||||||||||  |||| | | |||||| ||||||||||||||||    
T  10682533 acatttttcaaatatccatgtcact-cataaaaactctaaaatgggtcccact 10682482  T

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Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 148
Target Start/End: Original strand, 13685396 - 13685478
Alignment:
Q  67 ggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactcaattatattttctaaa 148  Q
    |||||||||||||||| |||||||||||||||||||| || |   ||||| |||||||||| ||||||| |||||||||||||    
T  13685396 ggtggtataaatgggtcccacataatacattatattattttatacttttcaattatttaaaacactcaactatattttctaaa 13685478  T

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Target: scaffold0110 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 188
Target Start/End: Original strand, 13773 - 13925
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactcaatt 136  Q
    |||||| |||||||||| |||||||| |||||||||||||||||| |||||||||| | ||||||| || ||  ||  | ||||||||||||||||  ||    
T  13773 agagcatccacatccatgccacccatttgggtggtataaatgggtcccacataatataatatattattttacacttcccaattatttaaaccactctctt 13872  T
Q  137 ata-ttttctaaatatccataccactccttcaaaactttaaaatgggtcccac 188  Q
    | | |||| ||||||||||||| |||| |  ||||||||||| ||||||||||    
T  13873 acatttttttaaatatccatactactcatctaaaactttaaagtgggtcccac 13925  T

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Target: scaffold0110; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 188
Target Start/End: Original strand, 21510 - 21662
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcacttttttc-attatttaaaccactcaatt 136  Q
    |||||| |||||||||| |||||||| |||||||||||||||||| |||||||||| | ||||||| || ||  ||  | ||||||||||||||||  ||    
T  21510 agagcatccacatccatgccacccatttgggtggtataaatgggtcccacataatataatatattattttacacttcccaattatttaaaccactctctt 21609  T
Q  137 ata-ttttctaaatatccataccactccttcaaaactttaaaatgggtcccac 188  Q
    | | |||| ||||||||||||| |||| |  ||||||||||| ||||||||||    
T  21610 acatttttttaaatatccatactactcatctaaaactttaaagtgggtcccac 21662  T

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Target: scaffold0867 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 3627 - 3556
Alignment:
Q  38 agagcacccacatccataccacccatatgggtggtataaatgggttccacataatacattatattacttcac 109  Q
    |||||| |||||| ||| ||||||||||||||||| ||||| |   |||| ||||| |||||||||||||||    
T  3627 agagcatccacattcattccacccatatgggtggtttaaatagaccccacttaatatattatattacttcac 3556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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