View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4516_low_14 (Length: 275)
Name: NF4516_low_14
Description: NF4516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4516_low_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 1936530 - 1936797
Alignment:
| Q |
1 |
ctggtggaaaatctggcatcatcattaaatccataaaactgatgtattgagactcctgtcctaaacatttaatacnnnnnnnn-cacgagtttaacacaa |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||| |
|
|
| T |
1936530 |
ctggtggaaaatctggcatcatcattaaatccataaaactgatgtattgagactcgtgtcctaaacatttaacacaaaaaaaaacacgagtttaacacaa |
1936629 |
T |
|
| Q |
100 |
aaaagagagaatttagcnnnnnnnnnnnntagagaattgattcgtgaacatccttatgtgtcaaaccactattgtaccactcatatgtaacattttttac |
199 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1936630 |
aaaagagagaatttagcacaaaaaaaaaatagagaattgattcgtgaacatccttatgtgtcaaaccactattgtaccactcatatgtaacattttttac |
1936729 |
T |
|
| Q |
200 |
taattttgagcacatgtttatgtgaacatcattgtttcatttcgagcacatgctcaattgttcttctc |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1936730 |
taattttgagcacatgtttatgtgaacatcattgtttcatttcgagcacatgctcaattgttcttctc |
1936797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 205
Target Start/End: Original strand, 34819621 - 34819695
Alignment:
| Q |
131 |
gagaattgattcgtgaacatccttatgtgtcaaaccactattgtaccactcatatgtaacattttttactaattt |
205 |
Q |
| |
|
|||||||||||| | ||||| |||||||| ||||||||| ||||||||||||||||| |||||||| |||||| |
|
|
| T |
34819621 |
gagaattgattcataaacatgcttatgtggcaaaccactcttgtaccactcatatgtggtattttttattaattt |
34819695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 205
Target Start/End: Original strand, 37863950 - 37864024
Alignment:
| Q |
131 |
gagaattgattcgtgaacatccttatgtgtcaaaccactattgtaccactcatatgtaacattttttactaattt |
205 |
Q |
| |
|
|||||||||||| | ||||| |||||||| ||||||||| ||||||||||||||||| |||||||| |||||| |
|
|
| T |
37863950 |
gagaattgattcataaacatacttatgtggcaaaccactcttgtaccactcatatgtggtattttttattaattt |
37864024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University