View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4516_low_18 (Length: 238)
Name: NF4516_low_18
Description: NF4516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4516_low_18 |
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| [»] chr5 (3 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 24828295 - 24828060
Alignment:
| Q |
18 |
actttgatccattactcctcttttggcaagattatcccttgttgctaatctattttgaaataatctccacacaaa---------------cgggaccgat |
102 |
Q |
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| T |
24828295 |
actttgatccattactcctcttttggcaagattataccttgttgctaatctattttgaaataatctccacactaaacatgaaacttttaacgggaccgat |
24828196 |
T |
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| Q |
103 |
ttatgccaagcttttgaccatctaggatacgaagaacttgacatattagacatcaaccacttatacacctctttcactgagtatacattataagactcca |
202 |
Q |
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| T |
24828195 |
ttatgccaagcttttgaccatataggatccgaagaacttgacatattagacatcaaccacttatacacctctttcgctgagtatacattataagactcca |
24828096 |
T |
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| Q |
203 |
ctcccccataatctaagttacaaatgtctttccacc |
238 |
Q |
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| T |
24828095 |
ctcccccataatctaagttacaaatttctttccacc |
24828060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 21348737 - 21348505
Alignment:
| Q |
20 |
tttgatccattactcctcttttggcaagattatcccttgttgctaatctattttgaaataatctccacacaaa---------------cgggaccgattt |
104 |
Q |
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| T |
21348737 |
tttgatccaaaactcctcttttggaaaggttatcccttgtagctaatctgttttgaaataatctccaaactaaacatgagacttttaacggaaccgattt |
21348638 |
T |
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| Q |
105 |
atgccaagcttttgaccatctaggatacgaagaacttgacatattagacatcaaccacttatacacctctttcactgagtatacattataagactccact |
204 |
Q |
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| T |
21348637 |
atgc-aagccttcgaccatatagaatccgaagagcttgacacattagacatcaaccccttatatacctctttaactgaatacacattaagagattccact |
21348539 |
T |
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| Q |
205 |
cccccataatctaagttacaaatgtctttccacc |
238 |
Q |
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| T |
21348538 |
cccccaaaatctatgtagcaaatatctttccacc |
21348505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 91 - 238
Target Start/End: Original strand, 27119095 - 27119242
Alignment:
| Q |
91 |
aacgggaccgatttatgccaagcttttgaccatctaggatacgaagaacttgacatattagacatcaaccacttatacacctctttcactgagtatacat |
190 |
Q |
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| T |
27119095 |
aacggcactgatttatgtcaagccttcgaccgtatgggatccaaagagcctgacaaattagacatcaaccccttatacctcttcttaaatgaatatacat |
27119194 |
T |
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| Q |
191 |
tataagactccactcccccataatctaagttacaaatgtctttccacc |
238 |
Q |
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| T |
27119195 |
tatgagactccactcccccataatctatgttgcaaatgtctttccacc |
27119242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 150 - 235
Target Start/End: Original strand, 36475135 - 36475220
Alignment:
| Q |
150 |
agacatcaaccacttatacacctctttcactgagtatacattataagactccactcccccataatctaagttacaaatgtctttcc |
235 |
Q |
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| T |
36475135 |
agacatcgaccacttatacacctctttaaatgaatacacattatgagactccactcccccataatctttgttgcaaatgtctttcc |
36475220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 36474953 - 36475023
Alignment:
| Q |
17 |
aactttgatccattactcctcttttggcaa-gattatcccttgttgctaatctattttgaaataatctcca |
86 |
Q |
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| T |
36474953 |
aactttgatccatggctcctcttttgaaaaaggttatcccttattgctaatctattttgaaataatctcca |
36475023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 29121631 - 29121743
Alignment:
| Q |
125 |
taggatacgaagaacttgacatattagacatcaaccacttatacacctctttcactgagtatacattataagactccactcccccataatctaagttaca |
224 |
Q |
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| T |
29121631 |
taggatccgaagctcttgacaaattagacatcaacc-cttatatacctctttaactgaatacacattatgcgtctccaatcccccaaaatctatgttgca |
29121729 |
T |
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| Q |
225 |
aatgtctttccacc |
238 |
Q |
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| T |
29121730 |
aatgtctttccacc |
29121743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 29121525 - 29121580
Alignment:
| Q |
34 |
cctcttttggcaagattatcccttgttgctaatctattttgaaataatctccacac |
89 |
Q |
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| T |
29121525 |
cctcttttgaaaagattatcccttgttgttaatttactttgaaataatctccacac |
29121580 |
T |
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