View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4516_low_3 (Length: 389)
Name: NF4516_low_3
Description: NF4516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4516_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 526097 - 526381
Alignment:
| Q |
1 |
caatcgcaacgtctctctgctgcttccaccatgatcaatctttctcttataataaggtaccattttgtatgaatatgtcattttctgaaatagtgttagg |
100 |
Q |
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| T |
526097 |
caatcgcaacgtctctctgctgcttccaccatgatcaatctttctcttataataaggtaccattttgtatgaatatgtcattttctgaaatagtgttagg |
526196 |
T |
|
| Q |
101 |
atctcaataacatcaaaacttcttatcgaatgtgtgttccagtgtctaacaagagtcacaaaattttattgatattggcgtgtcggtgtccatatcgtgt |
200 |
Q |
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| T |
526197 |
atctcaataacatcaaaacttcttatcgaatgtgtgttccagtgtctgacaagtgtcacaaaattttattgatattggcgtgttggtgtccatattgtgt |
526296 |
T |
|
| Q |
201 |
attgtttgtgtgcttcttcacaggttatatataatcataataatgacaaccctttcactgtttcacaatataatatacgtcacac |
285 |
Q |
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| T |
526297 |
attgtttgtgtgcttcttcacaggttatatataatcataataatgacaaccctttcactgtttcaaaatataatatacgtcacac |
526381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 344 - 380
Target Start/End: Original strand, 526440 - 526476
Alignment:
| Q |
344 |
gggataaagccttgaaacctgaatgagtcctatcatt |
380 |
Q |
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| T |
526440 |
gggataaagccttgaaacctgaatgagtcctatcatt |
526476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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