View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4516_low_7 (Length: 343)
Name: NF4516_low_7
Description: NF4516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4516_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 24563139 - 24562947
Alignment:
| Q |
19 |
aaaaggccgccaaggtaaacttaaaacatcgaattaataattcttaggcatggttttaaattacagtcgcaattacgctgcaaataattatattgcattt |
118 |
Q |
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| T |
24563139 |
aaaaggccgccaaggtaaacttaaaacatcgaattaataactcttaggcatggttttaaattacagtcgcaattatgctgcaaataattatattgcattt |
24563040 |
T |
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| Q |
119 |
aaatacgactgagtcgaattttttggtgaaatgttgttgcagagacatcaaaatcttttatactgcagttgcataccgcaatttaaaacatgc |
211 |
Q |
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| T |
24563039 |
aaatacgaccgagtcaaatttgttggtgaaatcttgttgcagagacatcaaaatcttttatactgcagttgcataccgcaatttaaaacatgc |
24562947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 276 - 331
Target Start/End: Complemental strand, 24562892 - 24562837
Alignment:
| Q |
276 |
agctaatattatactaacacaaatcccttgtcatgtttggcttctgtttcatctca |
331 |
Q |
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| T |
24562892 |
agctaatattatactaacacaattcccttgtcatgtttggcttctgtttcttctca |
24562837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 207
Target Start/End: Original strand, 31399196 - 31399226
Alignment:
| Q |
177 |
tatactgcagttgcataccgcaatttaaaac |
207 |
Q |
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| T |
31399196 |
tatactgcagttgcataccgcaatttaaaac |
31399226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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