View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4516_low_9 (Length: 316)
Name: NF4516_low_9
Description: NF4516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4516_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 22 - 301
Target Start/End: Original strand, 12192510 - 12192790
Alignment:
| Q |
22 |
ctcctcctcctgcatactcaccacctccaccacattatatctactcttcaccaccacctccttaccaccactaaatggtggtttacgatagtatcccacg |
121 |
Q |
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| T |
12192510 |
ctcctcctcctgcatactcaccacctccaccacattatatctactcttcaccacctcctccttaccaccactaaatggtggtttacgatagtatcccacg |
12192609 |
T |
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| Q |
122 |
gtatacttcttattaggtacaacccacacaaaatacttttatataattcaattacggtggttataatattaacctgataaatatctagttaggcatagct |
221 |
Q |
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| T |
12192610 |
gtatacttcttattacatacaacccacacaaaatacttttatataattcaattacagtggttataatattaatctgataaatatctagttagacatagct |
12192709 |
T |
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| Q |
222 |
tcaaat-aaaaaatatttggtaacacatataaatgataaaatttagcagataaaaatttaatgatatcatttaatatcttt |
301 |
Q |
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| T |
12192710 |
tcaaataaaaaaatatttggtaacacatataaatgataaaatttagcagataaaaatttaatgatatcatttaatatcttt |
12192790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 22 - 290
Target Start/End: Original strand, 12179429 - 12179721
Alignment:
| Q |
22 |
ctcctcctcctgcatactcaccacctccaccacattatatctactcttcaccaccacctcct---------taccaccactaaatggtggtttacgatag |
112 |
Q |
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| T |
12179429 |
ctcctcctcctgcttactcaccacctccaccacattatatctactcttcaccacctcctcctcctcctccttaccaccactaaatggtggtttacgatag |
12179528 |
T |
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| Q |
113 |
tatcccacggtatacttcttattaggtacaacccacacaaaatac----------------ttttatataattcaattacggtggttataatattaacct |
196 |
Q |
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| T |
12179529 |
tatcccaccgtatacttcttcctatgtacaacccacacaaaatacataatatttaaaatatttttatataattcaattacagtgcttataatattaatcc |
12179628 |
T |
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| Q |
197 |
gataaatatctagttaggcatagcttcaaataaaaaatatttggtaacacatataaatgataaaatttagcagataaaaatttaatgatatcat |
290 |
Q |
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| T |
12179629 |
gataaatatctagttgggcatagcttcaaataaaaaa-atttggtaacacacataaatgataaaatttaccagataaaaatttagtgacatcat |
12179721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 45 - 159
Target Start/End: Original strand, 12212983 - 12213097
Alignment:
| Q |
45 |
cctccaccacattatatctactcttcaccaccacctccttaccaccactaaatggtggtttacgatagtatcccacggtatacttcttattaggtacaac |
144 |
Q |
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| T |
12212983 |
cctccaccacattacatttattcatcaccccctcctccttaccactactagatagtggtttacgatagtatcaaatggtatgcttcttcctatgtacaac |
12213082 |
T |
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| Q |
145 |
ccacacaaaatactt |
159 |
Q |
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|||||||||| |||| |
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| T |
12213083 |
ccacacaaaacactt |
12213097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 12164401 - 12164446
Alignment:
| Q |
37 |
actcaccacctccaccacattatatctactcttcaccaccacctcc |
82 |
Q |
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| T |
12164401 |
actcaccacctccaccacactatgtctactcttcacctcctcctcc |
12164446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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