View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4517-Insertion-3 (Length: 671)
Name: NF4517-Insertion-3
Description: NF4517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4517-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 425; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 9 - 462
Target Start/End: Original strand, 38346053 - 38346510
Alignment:
| Q |
9 |
gttggacactcccaccctaactccaaccacaggcacgctgaacttattgctgccgatatcgacggcagcaacaatagtggccgtgtcgttggacactccc |
108 |
Q |
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| T |
38346053 |
gttggacactcccaccctaactccaaccacaggcacgctgaacttattgctaccgatttcgatggcagcaacaatagtggccgtgtcgttggacactccc |
38346152 |
T |
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| Q |
109 |
accctaactccaacaacaggaacgaatacatgaataatgaatataatggcaatcatggtcatgcataccattataatggcaaccacggtagcagatatgg |
208 |
Q |
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| T |
38346153 |
accctaactccaacaacaggaacgaatacatgaataatgaatataatggcaatcatggtcatgcataccattataatggcaaccacggtagcagatatgg |
38346252 |
T |
|
| Q |
209 |
gtatggatacaatgaatatgacggtagacatggaaatgtggtaccttactacaatcataatcaaagtcattctgatccttaccaatacaatggtgtttta |
308 |
Q |
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| T |
38346253 |
gtatggatacaatgaatatgacggtagacatggaaatgtggtaccttactacaatcataatcaaagtcattctgatccttaccaatacaatggtgtttta |
38346352 |
T |
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| Q |
309 |
gcaccacatgcaccatctgcttcagaacaaatgcaacatcaacaaatccaacactactatgatgatgatgccaataacaactgtgttattatgtgatcat |
408 |
Q |
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| T |
38346353 |
gcaccacatgcaccatctgcttcagaacaaatgcaacatcaacaaatccaacactactatgatgatgatgccaataacaactgtgttattatgtgatcag |
38346452 |
T |
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| Q |
409 |
tttgttggtatacattttacactac----tatggtttattgaaatttttgctttctgc |
462 |
Q |
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| T |
38346453 |
tttgttggtatacattttacactactatatatggtttattgaaatttttgctttctgc |
38346510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 42 - 128
Target Start/End: Original strand, 38345999 - 38346085
Alignment:
| Q |
42 |
cacgctgaacttattgctgccgatatcgacggcagcaacaatagtggccgtgtcgttggacactcccaccctaactccaacaacagg |
128 |
Q |
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| T |
38345999 |
cacgctgaacttattgctgccgatatcagcggcaacaacaatggtggcagtgtcgttggacactcccaccctaactccaaccacagg |
38346085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 530 - 560
Target Start/End: Original strand, 38346578 - 38346608
Alignment:
| Q |
530 |
cttttagggatatttaactagagatccctta |
560 |
Q |
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| T |
38346578 |
cttttagggatatttaactagagatccctta |
38346608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 239 - 371
Target Start/End: Complemental strand, 45043493 - 45043361
Alignment:
| Q |
239 |
tggaaatgtggtaccttactacaatcataatcaaagtcattctgatccttaccaatacaatggtgttttagcaccacatgcaccatctgcttcagaacaa |
338 |
Q |
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| T |
45043493 |
tggaaatgtggtacctagctataatcatattcaatatcaatctgacccttacccatccaatggtattttagcactgcctccaccatctgcatcagaacaa |
45043394 |
T |
|
| Q |
339 |
atgcaacatcaacaaatccaacactactatgat |
371 |
Q |
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| T |
45043393 |
ttgcaacatcaacaactccaacactacaatgat |
45043361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 219 - 327
Target Start/End: Complemental strand, 45043600 - 45043492
Alignment:
| Q |
219 |
aatgaatatgacggtagacatggaaatgtggtaccttactacaatcataatcaaagtcattctgatccttaccaatacaatggtgttttagcaccacatg |
318 |
Q |
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| T |
45043600 |
aatgaatataacggtggacatggaaatgtggtacctagctataaccgtattcaatatcaatctgaccgttaccgatccaacgatgttttcgcactacctg |
45043501 |
T |
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| Q |
319 |
caccatctg |
327 |
Q |
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| T |
45043500 |
caccatctg |
45043492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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