View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4517_low_6 (Length: 218)
Name: NF4517_low_6
Description: NF4517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4517_low_6 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 90 - 218
Target Start/End: Original strand, 36230228 - 36230363
Alignment:
| Q |
90 |
ataagaaatttgactgtggact------aataagagaatgcaaa-gggaaaacaagcatggaaattgtgaagtcataatgagggatgaatgcatgcatat |
182 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36230228 |
ataagaaatttgattgtggactcttataaataagagaatgcaaaagggaaaacaagcatggaaattgtgaagtcataatttgggatgaatgcatgcatat |
36230327 |
T |
|
| Q |
183 |
tgttgtgtgggcttgtgcctacacaaaatattttaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
36230328 |
tgttgtgtgggcttgtgcctacacaaaatattttaa |
36230363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 218
Target Start/End: Original strand, 46695760 - 46695791
Alignment:
| Q |
187 |
gtgtgggcttgtgcctacacaaaatattttaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
46695760 |
gtgtgggcttgtgcctacacaaaatattttaa |
46695791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 216
Target Start/End: Complemental strand, 27818781 - 27818751
Alignment:
| Q |
186 |
tgtgtgggcttgtgcctacacaaaatatttt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
27818781 |
tgtgtgggcttgtgcctacacaaaatatttt |
27818751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University