View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4518-Insertion-1 (Length: 763)

Name: NF4518-Insertion-1
Description: NF4518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4518-Insertion-1
NF4518-Insertion-1
[»] chr4 (8 HSPs)
chr4 (8-739)||(11797270-11797988)
chr4 (568-739)||(11675880-11676051)
chr4 (568-739)||(11684159-11684330)
chr4 (565-751)||(11701770-11701956)
chr4 (576-739)||(11695984-11696147)
chr4 (596-739)||(11778983-11779126)
chr4 (342-400)||(24613676-24613734)
chr4 (342-389)||(30982853-30982900)
[»] scaffold0294 (1 HSPs)
scaffold0294 (565-751)||(16415-16601)
[»] chr6 (8 HSPs)
chr6 (342-400)||(16766723-16766781)
chr6 (341-400)||(4118307-4118366)
chr6 (357-400)||(9522917-9522960)
chr6 (342-400)||(17302583-17302641)
chr6 (342-400)||(25038046-25038104)
chr6 (357-402)||(785445-785490)
chr6 (348-389)||(9107351-9107392)
chr6 (351-400)||(21395292-21395341)
[»] chr8 (2 HSPs)
chr8 (342-400)||(2572031-2572089)
chr8 (342-400)||(22652002-22652060)
[»] chr5 (4 HSPs)
chr5 (342-400)||(21542056-21542114)
chr5 (342-400)||(18592099-18592157)
chr5 (342-400)||(21522776-21522834)
chr5 (342-400)||(21533342-21533400)
[»] chr1 (4 HSPs)
chr1 (342-400)||(32461439-32461496)
chr1 (362-400)||(26526751-26526789)
chr1 (346-400)||(31694689-31694743)
chr1 (346-400)||(47989523-47989577)
[»] scaffold0008 (1 HSPs)
scaffold0008 (335-400)||(263340-263405)
[»] chr7 (7 HSPs)
chr7 (351-400)||(9408318-9408367)
chr7 (344-400)||(24339668-24339724)
chr7 (325-400)||(6028651-6028726)
chr7 (326-400)||(2334276-2334349)
chr7 (346-400)||(7438732-7438786)
chr7 (342-400)||(26033436-26033494)
chr7 (346-400)||(43243103-43243157)
[»] chr3 (4 HSPs)
chr3 (342-398)||(17005594-17005650)
chr3 (342-400)||(14209139-14209197)
chr3 (342-400)||(55212989-55213046)
chr3 (351-400)||(1509565-1509614)
[»] scaffold0086 (1 HSPs)
scaffold0086 (341-400)||(2954-3013)
[»] chr2 (4 HSPs)
chr2 (351-398)||(4882680-4882727)
chr2 (325-400)||(28524452-28524527)
chr2 (341-400)||(30717504-30717563)
chr2 (342-392)||(34337156-34337206)


Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 8 - 739
Target Start/End: Original strand, 11797270 - 11797988
Alignment:
Q  8 tatcataggtactatttgagccatttatcttgaatcctttgctagtctcagtttgcttttgatttagcttgctcgtctttttgtatcttcttgaaccaac 107  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||| |||  |  ||||||||||||||||||||||| |    
T  11797270 tatcataggtactacttgagccatttatcttgaatcctttgctagtctccgtttgcttatgatttaacttatta-tctttttgtatcttcttgaaccacc 11797368  T
Q  108 aattgaaattgattttctcagttctgagacattttagtctaagaattactcagaaaatccataatttgtcggcccatcgtaaaaacaagctgcaaaactt 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||    
T  11797369 aattgaaattgattttctcagttctgagacattttagtctaagaattactcagaaaattcatagtttgtcggcccattgtaaaaacaagctgcaaaactt 11797468  T
Q  208 gcatatcatgaagcttgttcttccaaatgaagctattctcttgcattaacgtagttcagttttaacggactactttaataacatagaactttgttgcact 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  11797469 gcatatcatgaagcttgttcttccaaatgaagctattctcttgcattaacgtagttcaattttaacggattactttaacaacatagaactttgttgcact 11797568  T
Q  308 gacacttctgatcgaaagcgtgtttcagtatccaacacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgtca-nnnn 406  Q
    |||||||||||||||||||||||  |||||||||||||||||| ||||||||| |||||||||| |||||||||| |||||||||||||||||||         
T  11797569 gacacttctgatcgaaagcgtgtcccagtatccaacacgtgttatgtctgacaacgacacaacaccgacacttgtgattacattaaattatgtcattttt 11797668  T
Q  407 nnnncaaaattttattggtgttgatgtgcccgtgtcaatgtcgtgtcatgtgtccatgtttgtgtccatgcttcatagacagatggatcaaactcataat 506  Q
        ||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||    
T  11797669 ttttcaaaattttattggtgttgatgtgcccgtgtcaatgtcgtgtca------------tgtgtccatgcttcatagacagatggatcaaactcataat 11797756  T
Q  507 caattcttttcgtttcgattaacannnnnnnnnnnngtttattgtgtttctagatgcaatgagaattgaaatgaattatgaatgttttgtttaggtgtgg 606  Q
     | ||||| |||||||||||||||             ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  11797757 tagttcttgtcgtttcgattaacatttttttattta-tttattgtgtttctaaatgcaatgagaattgaaatgaattatgaatgttatgtttaggtgtgg 11797855  T
Q  607 aagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaacaggaccactcaaacaaagcactgtaacagctgctaagaatgt 706  Q
    |||||||||||||| |||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||| | |||||    
T  11797856 aagtggcagagagggtatcatattatggaattcaagggaatttgatatcatatctaacaggaccactcaaacaaagcactgcaaaagctgctgaaaatgt 11797955  T
Q  707 caatatttgggctggaactgctgctctccttcc 739  Q
     ||| |||||| |||||||||| |||| |||||    
T  11797956 gaatgtttgggttggaactgcttctctacttcc 11797988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 568 - 739
Target Start/End: Original strand, 11675880 - 11676051
Alignment:
Q  568 agaattgaaatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaacagg 667  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||| ||||| ||||||||||||||||||||    
T  11675880 agaattgaaatgagttatgaatgttttgtataggtgtggaagtggcagagagggtatcatattatgggattcaagggaacttgatatcatatctaacagg 11675979  T
Q  668 accactcaaacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcc 739  Q
    |||||||||||||||||||| ||| |||||| ||||||| |||||||||||||||  |||| ||||||||||    
T  11675980 accactcaaacaaagcactgcaactgctgctgagaatgtgaatatttgggctggagttgcttctctccttcc 11676051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 568 - 739
Target Start/End: Original strand, 11684159 - 11684330
Alignment:
Q  568 agaattgaaatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaacagg 667  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||| ||||| ||||||||||||||||||||    
T  11684159 agaattgaaatgagttatgaatgttttgtataggtgtggaagtggcagagagggtatcatattatgggattcaagggaacttgatatcatatctaacagg 11684258  T
Q  668 accactcaaacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcc 739  Q
    |||||||||||||||||||| ||| |||||| ||||||| |||||||||||||||  |||| ||||||||||    
T  11684259 accactcaaacaaagcactgcaactgctgctgagaatgtgaatatttgggctggagttgcttctctccttcc 11684330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 565 - 751
Target Start/End: Original strand, 11701770 - 11701956
Alignment:
Q  565 atgagaattgaaatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaac 664  Q
    ||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||| |||||| |||||| ||||| |||||||||||||||||||||||    
T  11701770 atgagaatttaaatggattatgaatgttatgtttaggtgtggaagtggcagagagggtatcatattatggaattcaagggaatttgatatcatatctaac 11701869  T
Q  665 aggaccactcaaacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcccctgttaggtgc 751  Q
    ||| ||||||||||| ||||||| |||||||||||||||||| ||| ||||||||||||| ||| |||| ||||| || ||||||||    
T  11701870 agggccactcaaacagagcactgcaacagctgctaagaatgtaaatgtttgggctggaacagcttctctacttcctctcttaggtgc 11701956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 576 - 739
Target Start/End: Original strand, 11695984 - 11696147
Alignment:
Q  576 aatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaacaggaccactca 675  Q
    |||||||| |||||||| | ||||||||||||| |||||||||||  ||||| |||||| ||||| ||||||||||||||||||||||||||||||||||    
T  11695984 aatgaattgtgaatgttatatttaggtgtggaaatggcagagagggcatcatattatggaattcaagggaatttgatatcatatctaacaggaccactca 11696083  T
Q  676 aacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcc 739  Q
    |||||||||||| || ||||||| | ||||| ||||||||||||||||||||| |||| |||||    
T  11696084 aacaaagcactgcaaaagctgctgaaaatgtgaatatttgggctggaactgcttctctacttcc 11696147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 596 - 739
Target Start/End: Original strand, 11778983 - 11779126
Alignment:
Q  596 tttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaacaggaccactcaaacaaagcactgtaacagct 695  Q
    |||||||||||| |||||||||||||| |||| || |||| || |||| || |||||||||||||||||||| ||||||||||||||||||| ||| |||    
T  11778983 tttaggtgtggaggtggcagagaggatgtcatattttggggttaagggaaacttgatatcatatctaacagggccactcaaacaaagcactgcaactgct 11779082  T
Q  696 gctaagaatgtcaatatttgggctggaactgctgctctccttcc 739  Q
    ||||||||||| ||| ||||||||||||||||| ||||||||||    
T  11779083 gctaagaatgtgaatgtttgggctggaactgcttctctccttcc 11779126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 342 - 400
Target Start/End: Original strand, 24613676 - 24613734
Alignment:
Q  342 acacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 400  Q
    |||||||| ||||||||||||||||  ||| ||||||||||| ||||||| ||||||||    
T  24613676 acacgtgtcgtgtctgacaccgacatgacaccgacacttgtacttacattgaattatgt 24613734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 342 - 389
Target Start/End: Original strand, 30982853 - 30982900
Alignment:
Q  342 acacgtgttgtgtctgacaccgacacaacagcgacacttgtaattaca 389  Q
    |||||||| ||||||||||||||||| ||| |||||||| ||||||||    
T  30982853 acacgtgtcgtgtctgacaccgacacgacaccgacacttataattaca 30982900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 127; Significance: 4e-65; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 565 - 751
Target Start/End: Original strand, 16415 - 16601
Alignment:
Q  565 atgagaattgaaatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaac 664  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||| |  ||||||| |||| || |||||||||||||||||    
T  16415 atgagaattgaaatggattatgaatgttatgtttaggtgtggaagtagcagagaggatatcatatattgggattaagggaaacttgatatcatatctaac 16514  T
Q  665 aggaccactcaaacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcccctgttaggtgc 751  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||| ||||| || ||||||||    
T  16515 aggaccactcaaacaaagcactgcaacagctgctaagaatgtgaatatttgggctggaactgcttctctacttcctctcttaggtgc 16601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 342 - 400
Target Start/End: Complemental strand, 16766781 - 16766723
Alignment:
Q  342 acacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 400  Q
    |||||||||||||| ||||||||||| ||| ||||||||||||||||| | ||||||||    
T  16766781 acacgtgttgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgt 16766723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 341 - 400
Target Start/End: Original strand, 4118307 - 4118366
Alignment:
Q  341 aacacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 400  Q
    ||||||| ||||||| ||||| ||||||| | | ||||||||||||||||| ||||||||    
T  4118307 aacacgtattgtgtccgacactgacacaaaaccaacacttgtaattacatttaattatgt 4118366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 357 - 400
Target Start/End: Complemental strand, 9522960 - 9522917
Alignment:
Q  357 gacaccgacacaacagcgacacttgtaattacattaaattatgt 400  Q
    ||||||||||||||| ||||||||||||||||| | ||||||||    
T  9522960 gacaccgacacaacaccgacacttgtaattacactgaattatgt 9522917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 342 - 400
Target Start/End: Complemental strand, 17302641 - 17302583
Alignment:
Q  342 acacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 400  Q
    ||||||||||||||| | || ||||| |||  |||||||||||||||||| ||||||||    
T  17302641 acacgtgttgtgtctaatactgacacgacaatgacacttgtaattacattgaattatgt 17302583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 342 - 400
Target Start/End: Original strand, 25038046 - 25038104
Alignment:
Q  342 acacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 400  Q
    |||||||| ||||| |||||| |||||| | ||||| ||||||||||| ||||||||||    
T  25038046 acacgtgtcgtgtcggacaccaacacaataccgacatttgtaattacactaaattatgt 25038104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 357 - 402
Target Start/End: Original strand, 785445 - 785490
Alignment:
Q  357 gacaccgacacaacagcgacacttgtaattacattaaattatgtca 402  Q
    ||||||||||| ||| |||||||||| |||||||| ||||||||||    
T  785445 gacaccgacacgacaccgacacttgtgattacattgaattatgtca 785490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 348 - 389
Target Start/End: Original strand, 9107351 - 9107392
Alignment:
Q  348 gttgtgtctgacaccgacacaacagcgacacttgtaattaca 389  Q
    |||||||| ||||||||||| ||| |||||||||||||||||    
T  9107351 gttgtgtccgacaccgacacgacaccgacacttgtaattaca 9107392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 351 - 400
Target Start/End: Original strand, 21395292 - 21395341
Alignment:
Q  351 gtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 400  Q
    ||||| ||||| ||||| ||| ||||||||||||||||| ||||||||||    
T  21395292 gtgtccgacactgacacgacaccgacacttgtaattacactaaattatgt 21395341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 342 - 400
Target Start/End: Original strand, 2572031 - 2572089
Alignment:
Q  342 acacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 400  Q
    |||||||| ||||| ||||| ||||| ||| ||||||||||||||||| ||||||||||    
T  2572031 acacgtgtcgtgtccgacacagacacgacaccgacacttgtaattacactaaattatgt 2572089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 342 - 400
Target Start/End: Complemental strand, 22652060 - 22652002
Alignment:
Q  342 acacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 400  Q
    |||| ||| ||||| ||||||||||| ||| ||||||||||||||| ||| ||||||||    
T  22652060 acacatgtcgtgtccgacaccgacacgacaccgacacttgtaattatattgaattatgt 22652002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 342 - 400
Target Start/End: Complemental strand, 21542114 - 21542056
Alignment:
Q  342 acacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 400  Q
    |||||||| ||||| ||||||||||| ||| ||||||||||||||||| | ||||||||    
T  21542114 acacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgt 21542056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 342 - 400
Target Start/End: Complemental strand, 18592157 - 18592099
Alignment:
Q  342 acacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 400  Q
    |||||||||||||| ||||||||||| ||| || ||| | |||||||||| ||||||||    
T  18592157 acacgtgttgtgtccgacaccgacacgacaccggcacatataattacattgaattatgt 18592099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 342 - 400
Target Start/End: Complemental strand, 21522834 - 21522776
Alignment:
Q  342 acacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 400  Q
    |||||||| ||||| ||||||||||| ||| ||||| ||||||||||| | ||||||||    
T  21522834 acacgtgtcgtgtccgacaccgacacgacaccgacaattgtaattacactgaattatgt 21522776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 342 - 400
Target Start/End: Complemental strand, 21533400 - 21533342
Alignment:
Q  342 acacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 400  Q
    |||||||| ||||| ||||||||||| ||| ||||| ||||||||||| | ||||||||    
T  21533400 acacgtgtcgtgtccgacaccgacacgacaccgacaattgtaattacactgaattatgt 21533342  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 342 - 400
Target Start/End: Original strand, 32461439 - 32461496
Alignment:
Q  342 acacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 400  Q
    |||||||| ||||| |||||||||||| || | ||||||||||||||||||||||||||    
T  32461439 acacgtgtcgtgtccgacaccgacaca-caccaacacttgtaattacattaaattatgt 32461496  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 362 - 400
Target Start/End: Original strand, 26526751 - 26526789
Alignment:
Q  362 cgacacaacagcgacacttgtaattacattaaattatgt 400  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  26526751 cgacacaacaccgacacttgtaattatattaaattatgt 26526789  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 346 - 400
Target Start/End: Original strand, 31694689 - 31694743
Alignment:
Q  346 gtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 400  Q
    |||||||||| ||||||||||| ||| ||||||||||||||| | | ||||||||    
T  31694689 gtgttgtgtccgacaccgacacgacaccgacacttgtaattatactgaattatgt 31694743  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 346 - 400
Target Start/End: Complemental strand, 47989577 - 47989523
Alignment:
Q  346 gtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 400  Q
    |||| ||||| ||||||||||| ||| ||||||||||||||||| | ||||||||    
T  47989577 gtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgt 47989523  T

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Target: scaffold0008 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 335 - 400
Target Start/End: Original strand, 263340 - 263405
Alignment:
Q  335 gtatccaacacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 400  Q
    ||||| ||||||||| ||||||||||||||||| |||  ||||||| |||||||| | ||||||||    
T  263340 gtatcgaacacgtgtcgtgtctgacaccgacacgacactgacacttataattacactgaattatgt 263405  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 351 - 400
Target Start/End: Original strand, 9408318 - 9408367
Alignment:
Q  351 gtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 400  Q
    |||||||||||||| || ||| ||||||||||||||||| ||||||||||    
T  9408318 gtgtctgacaccgatacgacaccgacacttgtaattacactaaattatgt 9408367  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 344 - 400
Target Start/End: Complemental strand, 24339724 - 24339668
Alignment:
Q  344 acgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 400  Q
    |||||| ||||| ||||||||||| ||| ||||||||||||||||| | ||||||||    
T  24339724 acgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgt 24339668  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 325 - 400
Target Start/End: Complemental strand, 6028726 - 6028651
Alignment:
Q  325 gcgtgtttcagtatccaacacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 400  Q
    |||||| ||||| || ||| ||||| ||||  ||||| ||||| ||| ||||| ||||||||||||||||||||||    
T  6028726 gcgtgtctcagtgtcgaactcgtgtcgtgttcgacactgacacgacaccgacatttgtaattacattaaattatgt 6028651  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 326 - 400
Target Start/End: Complemental strand, 2334349 - 2334276
Alignment:
Q  326 cgtgtttcagtatccaacacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 400  Q
    ||||||||||| ||  ||| |||| ||||| ||||| ||||| ||| ||||||||||||||||| ||||||||||    
T  2334349 cgtgtttcagtgtcggacatgtgtcgtgtccgacac-gacacgacaccgacacttgtaattacactaaattatgt 2334276  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 346 - 400
Target Start/End: Complemental strand, 7438786 - 7438732
Alignment:
Q  346 gtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 400  Q
    |||| |||| |||||||||||  ||| ||||||||||||||||||| ||||||||    
T  7438786 gtgtcgtgtttgacaccgacatgacaccgacacttgtaattacattgaattatgt 7438732  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 342 - 400
Target Start/End: Original strand, 26033436 - 26033494
Alignment:
Q  342 acacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 400  Q
    ||||||||  |||||||||||||||| | | ||||||||||||||||| | ||||||||    
T  26033436 acacgtgtcatgtctgacaccgacacgagaccgacacttgtaattacactgaattatgt 26033494  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 346 - 400
Target Start/End: Complemental strand, 43243157 - 43243103
Alignment:
Q  346 gtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 400  Q
    |||||||||  |||||  |||| ||| ||||||||||||||||||||||||||||    
T  43243157 gtgttgtgttcgacacaaacacgacatcgacacttgtaattacattaaattatgt 43243103  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 342 - 398
Target Start/End: Original strand, 17005594 - 17005650
Alignment:
Q  342 acacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattat 398  Q
    ||||||||| ||||||||||| |||||||| |||||||| |||||||| | ||||||    
T  17005594 acacgtgttatgtctgacaccaacacaacaccgacacttataattacactgaattat 17005650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 342 - 400
Target Start/End: Complemental strand, 14209197 - 14209139
Alignment:
Q  342 acacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 400  Q
    |||||||| ||||| ||||||||||| |||  |||||||||||||||| | ||||||||    
T  14209197 acacgtgtcgtgtccgacaccgacacgacactgacacttgtaattacactgaattatgt 14209139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 342 - 400
Target Start/End: Complemental strand, 55213046 - 55212989
Alignment:
Q  342 acacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 400  Q
    |||||||||||| | |||||||||||| || |||||||||||||| || ||||||||||    
T  55213046 acacgtgttgtgcccgacaccgacaca-caccgacacttgtaattgcactaaattatgt 55212989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 351 - 400
Target Start/End: Complemental strand, 1509614 - 1509565
Alignment:
Q  351 gtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 400  Q
    ||||| |||||||| || ||| ||||||||||||||||| ||||||||||    
T  1509614 gtgtcggacaccgaaacgacaccgacacttgtaattacactaaattatgt 1509565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 341 - 400
Target Start/End: Complemental strand, 3013 - 2954
Alignment:
Q  341 aacacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 400  Q
    ||||||||| |||||||| |||||||| |||  || ||||||||||||| ||||||||||    
T  3013 aacacgtgtcgtgtctgataccgacacgacactgatacttgtaattacactaaattatgt 2954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 351 - 398
Target Start/End: Original strand, 4882680 - 4882727
Alignment:
Q  351 gtgtctgacaccgacacaacagcgacacttgtaattacattaaattat 398  Q
    ||||||||||||||||| ||| ||||||||||||||||| | ||||||    
T  4882680 gtgtctgacaccgacacgacatcgacacttgtaattacactgaattat 4882727  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 325 - 400
Target Start/End: Complemental strand, 28524527 - 28524452
Alignment:
Q  325 gcgtgtttcagtatccaacacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 400  Q
    ||||||||| || ||  |||||||||||||| |||||| |||||||| |||||| | |||||||| | ||||||||    
T  28524527 gcgtgtttctgtgtcagacacgtgttgtgtccgacaccaacacaacaacgacacatataattacactgaattatgt 28524452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 341 - 400
Target Start/End: Original strand, 30717504 - 30717563
Alignment:
Q  341 aacacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 400  Q
    ||||||||| ||||| |||| |||||| ||| ||||||||||||||||| | ||||||||    
T  30717504 aacacgtgtcgtgtccgacaacgacacgacatcgacacttgtaattacactgaattatgt 30717563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 342 - 392
Target Start/End: Original strand, 34337156 - 34337206
Alignment:
Q  342 acacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacatta 392  Q
    |||||||||||||| ||||||||||  ||| ||||||||||||||| ||||    
T  34337156 acacgtgttgtgtccgacaccgacaggacaccgacacttgtaattaaatta 34337206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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