View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4518-Insertion-2 (Length: 639)
Name: NF4518-Insertion-2
Description: NF4518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4518-Insertion-2 |
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| [»] chr1 (8 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 608; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 8 - 639
Target Start/End: Original strand, 2417133 - 2417764
Alignment:
| Q |
8 |
gtatggatcagagagagcagcaaccgatgaagaatcaaggaatttgacaagctctgagatgaggttttcagactcgagagaaagttgaagttcagtaaac |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2417133 |
gtatggatcagagagagcagcaaccgatgaagaatcaaggaatttgacaagctctgagatgaggttttcagactcgagagaaagttgaagttcagtaaac |
2417232 |
T |
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| Q |
108 |
tacgaagcatataaaaccatgattgttaacagcaagttaataacctttcaataaaatataaaaaagacaaacatgcatccatttttatcctttcaacttc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2417233 |
tacgaagcatataaaaccatgattgttaacagcaagttaataacctttcaataaaatataaaaaagacaaacatgcatccatttttatcctttcaacttc |
2417332 |
T |
|
| Q |
208 |
ttttttcttgctacatagcctttatttcgctaggtaaaactgttaactaatagcatatagcttataacacatgagctcgcatatgagcaaaatagaattg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2417333 |
ttttttcttgctacatagcctttatttcgctaggtaaaactgttaactaatagcatatagcttataacacatgagctcacatatgagcaaaatagaattg |
2417432 |
T |
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| Q |
308 |
aatatcctaatccaaactcaatcccagaggcagagtttctttcttccctagaatgattagaagaatggcttcactttccatttctaattggaacggttga |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2417433 |
aatatcctaatccaaactcaatcccagaggcagagtttctttcttccctagaatgattagaaaaatggcttcactttccatttctaattggaacggttga |
2417532 |
T |
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| Q |
408 |
taacttcctggaccagagccacctctactgctaatagcttcaaagttttacacagtgcattttctgatacttatttccacagtcaacacattcaattctg |
507 |
Q |
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| T |
2417533 |
taacttcctggaccagagccacctttaatggtaaaagcttcaaagttttacacagtgcattttctgatacttatttccacagtcaacacattcaattctg |
2417632 |
T |
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| Q |
508 |
atacacatctgaattcaattctttcttcaatctcaatactttcctaatattgaaactacaaaacattacaagtttttcctacacaaagaccacaagtaac |
607 |
Q |
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| T |
2417633 |
atacacatctgaattcaattctttcttcaatctcaatactttcctaatattgaaactacaaaacattacaagtttttcctacacaaagaccacaagtaac |
2417732 |
T |
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| Q |
608 |
acagtgtacatcatacagttactcaactgaag |
639 |
Q |
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| T |
2417733 |
acagtgtacatcatacagttactcaactgaag |
2417764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 308
Target Start/End: Complemental strand, 2789342 - 2789046
Alignment:
| Q |
11 |
tggatcagagagagcagcaaccgatgaagaatcaaggaatttgacaagctctgagatgaggttttcagactcgagagaaagttgaagttcagtaaactac |
110 |
Q |
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|||||||||||| |||||| ||| | |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2789342 |
tggatcagagagtgcagcatccggtaaagaatcaaggaatttgacaagttcggagatgaggttttcagactcgagagaaagttgaagttcagtcaactat |
2789243 |
T |
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| Q |
111 |
gaagcatataaaaccatgattgttaacagcaagttaataacctttcaataaaatataaaaaagacaaacatgcatccatttttatcctttcaacttc-tt |
209 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | || |
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| T |
2789242 |
caagcatataaaaccatgattgttaacaacaagttaataacctttcaataaaatataaaaaagacaaacatgcatccatttttatccttttaactacttt |
2789143 |
T |
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| Q |
210 |
ttttcttgctacatagcctttatttcgctaggtaaaactgttaactaatagcatatagcttataacacatgagctcgcatatgagcaaaatagaattga |
308 |
Q |
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| T |
2789142 |
ttttcttgctacatagcctctattttgcaaggtaaaactgttaacttatagcagatagcttataatacataagctcg--tatgaccaaaatagaattga |
2789046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 311 - 483
Target Start/End: Complemental strand, 40141470 - 40141295
Alignment:
| Q |
311 |
atcctaatccaaactcaa--tcccagaggcagagtttctttcttccctagaatgattagaagaatggc-ttcactttccatttctaattggaacggttga |
407 |
Q |
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|||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||| |||||||||| |
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| T |
40141470 |
atcctaatccaaactcaaaatcctagaggcagagtttctttcttacctagaatgattagaagaatggcgtttactttccatttctaatgtgaacggttga |
40141371 |
T |
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| Q |
408 |
taacttcctggaccagagccacctctactgctaatagcttcaaagttttacacagtgcattttctgatacttattt |
483 |
Q |
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| T |
40141370 |
taacctgttggaccagagccacctctactactaatagcttcaaagttttccccagtgcattttctgatatttattt |
40141295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 491 - 617
Target Start/End: Complemental strand, 40027464 - 40027332
Alignment:
| Q |
491 |
caacacattcaattctgatacacatctgaattcaattctttcttcaatctcaatactttcctaatattg-aaactacaaaacattacaagtttttcct-- |
587 |
Q |
| |
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|||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||| |||||||||||| |
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| T |
40027464 |
caacccattcagttgtgatacacatctgaattcaattctttcttcaatctcaatactttcctaatattgaaaactataaaatattgcaagtttttcctac |
40027365 |
T |
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| Q |
588 |
---acacaaagaccacaagtaacacagtgtaca |
617 |
Q |
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| T |
40027364 |
ttaacacaaagacaacaagtaacattgtgtaca |
40027332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 491 - 588
Target Start/End: Complemental strand, 40141241 - 40141147
Alignment:
| Q |
491 |
caacacattcaattctgatacacatctgaattcaattctttcttcaatctcaatactttcctaatattgaaactacaaaacattacaagtttttccta |
588 |
Q |
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| T |
40141241 |
caacacatacacttctgatacacatctgaattcaattctttcttcaatctcaatacttccttaa---tgaaactacaaaacattgcaagtttttccta |
40141147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 327 - 390
Target Start/End: Complemental strand, 40128407 - 40128343
Alignment:
| Q |
327 |
aatcccagaggcagagtttctttcttccctagaatgattagaagaatggc-ttcactttccattt |
390 |
Q |
| |
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||||| |||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
40128407 |
aatcctagaggcagagcttctttcatccctagaatgattagaagaatggcgttcactttccattt |
40128343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 589
Target Start/End: Complemental strand, 47874172 - 47874120
Alignment:
| Q |
537 |
atctcaatactttcctaatattgaaactacaaaacattacaagtttttcctac |
589 |
Q |
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| T |
47874172 |
atctcaatacttgtctaatattgaaactacaaaccataacaagtttttcctac |
47874120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 466
Target Start/End: Complemental strand, 40027578 - 40027533
Alignment:
| Q |
421 |
cagagccacctctactgctaatagcttcaaagttttacacagtgca |
466 |
Q |
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| T |
40027578 |
cagagccgcctctactgctactagcttcaaaattttgcacagtgca |
40027533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 4243932 - 4243878
Alignment:
| Q |
12 |
ggatcagagagagcagcaaccgatgaagaatcaaggaatttgacaagctctgaga |
66 |
Q |
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|||||||| | ||||||| || || ||||||||||||| |||||||||||||||| |
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| T |
4243932 |
ggatcagaaaaagcagcatccaataaagaatcaaggaaattgacaagctctgaga |
4243878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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