View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4518-Insertion-3 (Length: 622)
Name: NF4518-Insertion-3
Description: NF4518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4518-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 8 - 399
Target Start/End: Original strand, 39603263 - 39603658
Alignment:
| Q |
8 |
gttgtgtagcagagacaacctttctc-catctgctatttcttgtatattcgtcattcctccattaactagtgaagccttcggttcttccttagaggtagc |
106 |
Q |
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| T |
39603263 |
gttgtgtagcagagacaacctttctctcatctgctatttcttttatattcatcattttgtcattaactagtgaaacctttggttctcccttagaggtagc |
39603362 |
T |
|
| Q |
107 |
agaggaa-gtgtg--tggtatcttggattgtggagaacatgaagactccatatctaaaaaataaaatcaaataagtaagatccaaatcatgattgtttca |
203 |
Q |
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||| || ||| ||||| ||||| ||||||| ||| |||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39603363 |
agataaaagtggaaatggtaacttgggttgtggacaacgtgaaaactccatatctacaaaataaaatcaaataagtaagatctaaatcatgattgtttca |
39603462 |
T |
|
| Q |
204 |
atcaccttgaacttgataattgtttcaatcaccttggagttcaagtggtagatataatcaaacacaaatttcttgttccataaataggtttcaaagctac |
303 |
Q |
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| T |
39603463 |
atcaccttaaacttgataattgtttcaatcaccttggagttcaagtagtagacataagcaagcacaaaattcttgttccatacataggtttcaaagctac |
39603562 |
T |
|
| Q |
304 |
aatttacaattcatacaatagacataaggaaaatataaacataaacacacatcctataaatatattttgtgtagcaaaactcagcacctcaaaaac |
399 |
Q |
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| T |
39603563 |
aatttataattcatacaatagacataatgaaaatgtagacacaaacacacatcctatacatatattttgtgtagaaaaactcagcacctcaaaaac |
39603658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 484
Target Start/End: Original strand, 39603663 - 39603700
Alignment:
| Q |
447 |
gcaaaaacaacaagatgcaagtacaacactcacttgta |
484 |
Q |
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| T |
39603663 |
gcaaaaacaaagagatgcaagtacaacactcacttgta |
39603700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 4e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 21827531 - 21827749
Alignment:
| Q |
20 |
agacaacctttctc-catctgctatttcttgtatattcgtcattcctccattaactagtgaagccttcggttcttccttagaggtagcagaggaagtgtg |
118 |
Q |
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|||||| ||||||| |||| |||||||||||||||||| ||||||| |||||||||||||| |||| |||||| |||||||||||||||| |||| | |
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| T |
21827531 |
agacaagctttctctcatccgctatttcttgtatattcatcattccgtcattaactagtgaaacctttggttctcccttagaggtagcagataaagttgg |
21827630 |
T |
|
| Q |
119 |
---tggtatcttggattgtggagaacatgaagactccatatctaaaaaataaaatcaaataagtaagatccaaatcatgattgtttcaatcaccttgaac |
215 |
Q |
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||| | ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
21827631 |
aaatggcaacttggattgtggacaacatgaagactccatatctacaaaataaaatcaaataagtaagatccaaatcatgattgtttcaatcaccttaaac |
21827730 |
T |
|
| Q |
216 |
ttgataattgtttcaatca |
234 |
Q |
| |
|
||||||| ||||||||||| |
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|
| T |
21827731 |
ttgataactgtttcaatca |
21827749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 273 - 399
Target Start/End: Original strand, 21827774 - 21827905
Alignment:
| Q |
273 |
ttcttgttccataaataggtttcaaagctacaatttacaattcatacaatagacataaggaaaatataaacataaacacac----atcctataaatatat |
368 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||| || ||| |||||||| |||||||| |||||| |
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| T |
21827774 |
ttcttgttccatacataggtttcaaagctacaatttacagttcatacaatagacataaagaaaatgtagacacaaacacacatcgatcctatacatatat |
21827873 |
T |
|
| Q |
369 |
tttgtgtagc-aaaactcagcacctcaaaaac |
399 |
Q |
| |
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|||||||||| |||| |||||||||||||||| |
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| T |
21827874 |
tttgtgtagcaaaaaatcagcacctcaaaaac |
21827905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 10 - 174
Target Start/End: Original strand, 43022157 - 43022325
Alignment:
| Q |
10 |
tgtgtagcagagacaacctttctc-catctgctatttcttgtatattcgtcattcctccattaactagtgaagccttcggttcttccttagaggtagcag |
108 |
Q |
| |
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||||||||||||||| ||||| || || | |||||||| |||||||| ||||||||| |||||||| ||||| |||| |||||| |||| |||||||||| |
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| T |
43022157 |
tgtgtagcagagacatcctttatctcagcagctatttcctgtatatttgtcattccttcattaacttgtgaaacctttggttctcccttggaggtagcag |
43022256 |
T |
|
| Q |
109 |
aggaagtgtg----tggtatcttggattgtggagaacatgaagactccatatctaaaaaataaaatcaaa |
174 |
Q |
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| T |
43022257 |
atgaagt-tgaagatggtatcttgggctgtgggcaacgagaagactccatatctggaaaataaaatcaaa |
43022325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 42811989 - 42812035
Alignment:
| Q |
176 |
aagtaagatccaaatcatgattgtttcaatcaccttgaacttgataa |
222 |
Q |
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| T |
42811989 |
aagtaagatccaaatcatgattgtttcaatcaccttgaacttgataa |
42812035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 43022368 - 43022414
Alignment:
| Q |
176 |
aagtaagatccaaatcatgattgtttcaatcaccttgaacttgataa |
222 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43022368 |
aagtaagatccaaatcatgattgtttcaatcaccttgaacttgataa |
43022414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 35061042 - 35061082
Alignment:
| Q |
179 |
taagatccaaatcatgattgtttcaatcaccttgaacttga |
219 |
Q |
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| T |
35061042 |
taagatccaaatcatgattgtttcaatcaccttgaacttga |
35061082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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