View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4518-Insertion-5 (Length: 409)
Name: NF4518-Insertion-5
Description: NF4518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4518-Insertion-5 |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 14 - 376
Target Start/End: Complemental strand, 4329231 - 4328862
Alignment:
| Q |
14 |
tcatctataaagttcttctttgttaatgtactttttatacataaaaaatataacactcactttggtttcatnnnnnnnn----ctcaacttataatcctc |
109 |
Q |
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| T |
4329231 |
tcatctataaggttcttctttgttaatgtactttttatacataaaaaatataacactcactttggtttcataaaaaaaaaaaactcaacttataatcctc |
4329132 |
T |
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| Q |
110 |
taaaattaaatgcagtgcacttcttgaccnnnnnnnnnnnnn--tgcagtacactta-gtcctcggtctatttttatcgattaatgatcatgaatagttg |
206 |
Q |
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| T |
4329131 |
taaaattaaatgcagtacacttcttgaccaaaaaaaaaaaaaaatgcagtacacttaagtcctcggtctatttttatcgattaatgatcatgaatagttg |
4329032 |
T |
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| Q |
207 |
tgttacttgagccatcaaaatatagacattttatttgtatcatatgtgctcatannnnnnnnnnnnnnnnnnnnnatctactacaactttcacatatttt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||| |
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| T |
4329031 |
tgttacttgagccatcaaaatatagacattttatttgtatcatatgtgttcatatttatttcttttttactttttatctactacaactttcacatacttt |
4328932 |
T |
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| Q |
307 |
aaatatagacacaacgatcaaagacaccaatttcaacactaacattttcatgtgttgttaacctactaag |
376 |
Q |
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|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4328931 |
aaatatagacacaaagatcaaagacaccaatttcaacattaacattttcatgtgttgttaacctactaag |
4328862 |
T |
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