View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4518-Insertion-8 (Length: 237)
Name: NF4518-Insertion-8
Description: NF4518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4518-Insertion-8 |
 |  |
|
| [»] chr3 (12 HSPs) |
 |  |
|
| [»] scaffold0090 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 5483603 - 5483374
Alignment:
| Q |
8 |
gaagtaaattattagattggactaagcgcttggaaattattgacgggattgctcgggggctgctgtatctccatcaggattctacattaagaatcataca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5483603 |
gaagtaaattattagattggactaagcgcttggaaattattgacgggattgctcgggggctgctgtatctccatcaggattctacattaagaatcataca |
5483504 |
T |
 |
| Q |
108 |
tagagatctcaagacaagcaatattcttcttgatattgatatgatcccaaagatatcagattttggtttagccagatcatttatgggagacgaagccgag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5483503 |
tagagatctcaagacaagcaatattcttcttgatgttgatatgatcccaaagatatcagattttggtttagccagatcatttatgggagacgaagccgag |
5483404 |
T |
 |
| Q |
208 |
gctaatacaaatagagtgatgggaacatag |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
5483403 |
gctaatacaaatagagtgatgggaacatag |
5483374 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 5453857 - 5453632
Alignment:
| Q |
8 |
gaagtaaattattagattggactaagcgcttggaaattattgacgggattgctcgggggctgctgtatctccatcaggattctacattaagaatcataca |
107 |
Q |
| |
|
|||| |||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| || |
|
|
| T |
5453857 |
gaagcaaattactagattggactaagcgtttggaaattattgacggtattgctcgggggctgttgtatctccatcaggattctacattaagaatcattca |
5453758 |
T |
 |
| Q |
108 |
tagagatctcaagacaagcaatattcttcttgatattgatatgatcccaaagatatcagattttggtttagccagatcatttatgggagacgaagccgag |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
5453757 |
tagagatctcaagacaagcaatattcttcttgatattcatatgatcccaaagatatccgattttggtttagccagatcatttatgggagaccaagctgag |
5453658 |
T |
 |
| Q |
208 |
gctaatacaaatagagtgatgggaac |
233 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
5453657 |
gctaatacaaatagagtgatgggaac |
5453632 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 9 - 237
Target Start/End: Original strand, 5803657 - 5803885
Alignment:
| Q |
9 |
aagtaaattattagattggactaagcgcttggaaattattgacgggattgctcgggggctgctgtatctccatcaggattctacattaagaatcatacat |
108 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||| |||||| ||||||||||||| ||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
5803657 |
aagtaaactattagattggacaaagcgcttggaaattattgatgggatttctcgggggctgctatatctgcatcaggattctacactaagaatcatacat |
5803756 |
T |
 |
| Q |
109 |
agagatctcaagacaagcaatattcttcttgatattgatatgatcccaaagatatcagattttggtttagccagatcatttatgggagacgaagccgagg |
208 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||| |||| |
|
|
| T |
5803757 |
agagatctcaagacaagcaatatacttcttgatattgatatgatcccaaagatatccgattttggattagccagatcatttatgggagaccaagcggagg |
5803856 |
T |
 |
| Q |
209 |
ctaatacaaatagagtgatgggaacatag |
237 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
5803857 |
ctaatacaaatagagtgatgggaacatag |
5803885 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 5445274 - 5445045
Alignment:
| Q |
8 |
gaagtaaattattagattggactaagcgcttggaaattattgacgggattgctcgggggctgctgtatctccatcaggattctacattaagaatcataca |
107 |
Q |
| |
|
|||| |||||| |||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5445274 |
gaagcaaattactagattggactaagcgtttggaaattattgatggtattgctcgggggctgctgtatctccatcaggattctacattaagaatcattca |
5445175 |
T |
 |
| Q |
108 |
tagagatctcaagacaagcaatattcttcttgatattgatatgatcccaaagatatcagattttggtttagccagatcatttatgggagacgaagccgag |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||| || ||||| |||| ||| |
|
|
| T |
5445174 |
tagagatctcaagacaagcaatattcttcttgatattgatatgatcccaaagatatccgatttcggtttagtcagatcattcattggagagcaagctgag |
5445075 |
T |
 |
| Q |
208 |
gctaatacaaatagagtgatgggaacatag |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
5445074 |
gctaatacaaatagagtgatgggaacatag |
5445045 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 5850084 - 5850313
Alignment:
| Q |
8 |
gaagtaaattattagattggactaagcgcttggaaattattgacgggattgctcgggggctgctgtatctccatcaggattctacattaagaatcataca |
107 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5850084 |
gaagtaaattactagattggacaaagcgcttggaaattattgatgggattgctcgagggctgctgtatctccatcaggattctacattaagaatcataca |
5850183 |
T |
 |
| Q |
108 |
tagagatctcaagacaagcaatattcttcttgatattgatatgatcccaaagatatcagattttggtttagccagatcatttatgggagacgaagccgag |
207 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| ||||||| |||| ||| |
|
|
| T |
5850184 |
tagagatctcaagaccagcaatatacttcttgatattgatatgatccctaagatatccgattttggattagccagatcatttacgggagaccaagctgag |
5850283 |
T |
 |
| Q |
208 |
gctaatacaaatagagtgatgggaacatag |
237 |
Q |
| |
|
||||| ||||||||||| |||||||||||| |
|
|
| T |
5850284 |
gctaagacaaatagagtcatgggaacatag |
5850313 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 5855235 - 5855464
Alignment:
| Q |
8 |
gaagtaaattattagattggactaagcgcttggaaattattgacgggattgctcgggggctgctgtatctccatcaggattctacattaagaatcataca |
107 |
Q |
| |
|
||||||||||| | ||||||| |||||||||||||||||||| ||||||||||| |||||| ||||||| ||||| ||||||||| ||||||| ||||| |
|
|
| T |
5855235 |
gaagtaaattactcgattggagaaagcgcttggaaattattgatgggattgctcgtgggctgttgtatctgcatcaagattctacactaagaataataca |
5855334 |
T |
 |
| Q |
108 |
tagagatctcaagacaagcaatattcttcttgatattgatatgatcccaaagatatcagattttggtttagccagatcatttatgggagacgaagccgag |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
5855335 |
tagagatctcaagacaagcaatattcttcttgatattgatatgatcccaaagatatcagattttggtttagccagatcatttatgggagaccaagctgag |
5855434 |
T |
 |
| Q |
208 |
gctaatacaaatagagtgatgggaacatag |
237 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |
|
|
| T |
5855435 |
gcgaatacaaatagagtgatgggaacatag |
5855464 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 5524764 - 5524535
Alignment:
| Q |
8 |
gaagtaaattattagattggactaagcgcttggaaattattgacgggattgctcgggggctgctgtatctccatcaggattctacattaagaatcataca |
107 |
Q |
| |
|
|||| |||||| || |||||| ||||||| ||||||||||| | || |||||||| |||||||| ||||| ||||| ||||||||| |||||||||||| |
|
|
| T |
5524764 |
gaagcaaattactaaattggaataagcgcctggaaattattaatggaattgctcgagggctgctatatcttcatcaagattctacacaaagaatcataca |
5524665 |
T |
 |
| Q |
108 |
tagagatctcaagacaagcaatattcttcttgatattgatatgatcccaaagatatcagattttggtttagccagatcatttatgggagacgaagccgag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5524664 |
tagagatctcaagacaagcaatattcttcttgatattgatatgatcccaaagatatcagattttggtttagccagatcatttatgggagacgaagccgag |
5524565 |
T |
 |
| Q |
208 |
gctaatacaaatagagtgatgggaacatag |
237 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |
|
|
| T |
5524564 |
gctaatacaaatagagtgatgggatcatag |
5524535 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 5829351 - 5829568
Alignment:
| Q |
20 |
tagattggactaagcgcttggaaattattgacgggattgctcgggggctgctgtatctccatcaggattctacattaagaatcatacatagagatctcaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||| |||||||| ||||||||||| ||||| ||||| || |||||||||||||||||||| |
|
|
| T |
5829351 |
tagattggactaagcgcttggaaattattgatggtattgctcgtgggctgctttatctccatcaagattcaacattgaggatcatacatagagatctcaa |
5829450 |
T |
 |
| Q |
120 |
gacaagcaatattcttcttgatattgatatgatcccaaagatatcagattttggtttagccagatcatttatgggagacgaagccgaggctaatacaaat |
219 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5829451 |
gacaagcaatatacttcttgatattgatatgatcccaaagatatcggattttggcttagccagatcatttatgggagaccaagccgaggctaatacaaat |
5829550 |
T |
 |
| Q |
220 |
agagtgatgggaacatag |
237 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
5829551 |
agagtgatgggaacatag |
5829568 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 22 - 233
Target Start/End: Complemental strand, 20342579 - 20342368
Alignment:
| Q |
22 |
gattggactaagcgcttggaaattattgacgggattgctcgggggctgctgtatctccatcaggattctacattaagaatcatacatagagatctcaaga |
121 |
Q |
| |
|
||||||||||| || |||||||||||| | || |||||||||||||| |||||||||||||| ||||||||| || |||||||||||||||||||||||| |
|
|
| T |
20342579 |
gattggactaaacgtttggaaattattaatggtattgctcgggggcttctgtatctccatcaagattctacactacgaatcatacatagagatctcaaga |
20342480 |
T |
 |
| Q |
122 |
caagcaatattcttcttgatattgatatgatcccaaagatatcagattttggtttagccagatcatttatgggagacgaagccgaggctaatacaaatag |
221 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
20342479 |
caagcaacattcttcttgatattgatatgatcccaaagatatcagattttggtttagccagatcatttatgggagaccaagccgaggctaatacaaatag |
20342380 |
T |
 |
| Q |
222 |
agtgatgggaac |
233 |
Q |
| |
|
|||||||||||| |
|
|
| T |
20342379 |
agtgatgggaac |
20342368 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 23 - 237
Target Start/End: Complemental strand, 5501885 - 5501671
Alignment:
| Q |
23 |
attggactaagcgcttggaaattattgacgggattgctcgggggctgctgtatctccatcaggattctacattaagaatcatacatagagatctcaagac |
122 |
Q |
| |
|
|||||| ||||||| ||||||||||||| || |||||||| |||||| ||||||| ||||| ||||||||| |||||||||||||||||||| | || || |
|
|
| T |
5501885 |
attggaataagcgcctggaaattattgatggaattgctcgagggctgttgtatcttcatcaagattctacactaagaatcatacatagagatatgaaaac |
5501786 |
T |
 |
| Q |
123 |
aagcaatattcttcttgatattgatatgatcccaaagatatcagattttggtttagccagatcatttatgggagacgaagccgaggctaatacaaataga |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5501785 |
aagcaatattcttcttgatattgatatgattccaaagatagcagattttggtttagccagatcatttatgggagacgaagcagaggctaatacaaataga |
5501686 |
T |
 |
| Q |
223 |
gtgatgggaacatag |
237 |
Q |
| |
|
|||| ||| ||||| |
|
|
| T |
5501685 |
ttgatcggatcatag |
5501671 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 23 - 237
Target Start/End: Complemental strand, 5489038 - 5488824
Alignment:
| Q |
23 |
attggactaagcgcttggaaattattgacgggattgctcgggggctgctgtatctccatcaggattctacattaagaatcatacatagagatctcaagac |
122 |
Q |
| |
|
|||||| |||||| ||||||||||||| || |||||||| |||||| ||||||| ||||| ||||||||| |||||||||||||||||||| | || || |
|
|
| T |
5489038 |
attggattaagcgtctggaaattattgatggaattgctcgagggctgttgtatcttcatcaagattctacactaagaatcatacatagagatatgaaaac |
5488939 |
T |
 |
| Q |
123 |
aagcaatattcttcttgatattgatatgatcccaaagatatcagattttggtttagccagatcatttatgggagacgaagccgaggctaatacaaataga |
222 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5488938 |
aagcaatattcttcttgatgttgatatgatcccaaagatagcagactttggtttagccagatcatttatgggagacgaagcagaggctaatacaaataga |
5488839 |
T |
 |
| Q |
223 |
gtgatgggaacatag |
237 |
Q |
| |
|
|||| ||| ||||| |
|
|
| T |
5488838 |
ttgatcggatcatag |
5488824 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 173
Target Start/End: Original strand, 1107547 - 1107647
Alignment:
| Q |
73 |
tatctccatcaggattctacattaagaatcatacatagagatctcaagacaagcaatattcttcttgatattgatatgatcccaaagatatcagattttg |
172 |
Q |
| |
|
||||| ||||| ||||||| ||| || ||||||||||||||||| || |||| || ||| | || |||| |||||||| ||| || ||||||||||||| |
|
|
| T |
1107547 |
tatcttcatcaagattctagattgaggatcatacatagagatctaaaaccaagtaacattttgctagataatgatatgaacccgaaaatatcagattttg |
1107646 |
T |
 |
| Q |
173 |
g |
173 |
Q |
| |
|
| |
|
|
| T |
1107647 |
g |
1107647 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 8 - 233
Target Start/End: Original strand, 25810538 - 25810763
Alignment:
| Q |
8 |
gaagtaaattattagattggactaagcgcttggaaattattgacgggattgctcgggggctgctgtatctccatcaggattctacattaagaatcataca |
107 |
Q |
| |
|
|||| |||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| || |
|
|
| T |
25810538 |
gaagcaaattactagattggactaagcgtttggaaattattgacggtattgctcgggggctgttgtatctccatcaggattctacattaagaatcattca |
25810637 |
T |
 |
| Q |
108 |
tagagatctcaagacaagcaatattcttcttgatattgatatgatcccaaagatatcagattttggtttagccagatcatttatgggagacgaagccgag |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
25810638 |
tagagatctcaagacaagcaatattcttcttgatattcatatgatcccaaagatatccgattttggtttagccagatcatttatgggagaccaagctgag |
25810737 |
T |
 |
| Q |
208 |
gctaatacaaatagagtgatgggaac |
233 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
25810738 |
gctaatacaaatagagtgatgggaac |
25810763 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 173
Target Start/End: Complemental strand, 22689471 - 22689353
Alignment:
| Q |
55 |
attgctcgggggctgctgtatctccatcaggattctacattaagaatcatacatagagatctcaagacaagcaatattcttcttgatattgatatgatcc |
154 |
Q |
| |
|
|||||||| || || || ||||| ||||| ||||||| |||||||||||||||||| ||||| ||| ||||||||||| | | || | |||||||| | |
|
|
| T |
22689471 |
attgctcgaggacttctttatcttcatcaagattctatattaagaatcatacatagggatctaaaggcaagcaatattttagtagacaatgatatgaatc |
22689372 |
T |
 |
| Q |
155 |
caaagatatcagattttgg |
173 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
22689371 |
caaagatttcagattttgg |
22689353 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 174
Target Start/End: Original strand, 2672448 - 2672549
Alignment:
| Q |
73 |
tatctccatcaggattctacattaagaatcatacatagagatctcaagacaagcaatattcttcttgatattgatatgatcccaaagatatcagattttg |
172 |
Q |
| |
|
||||||||||| || || | ||| |||||||| || || ||||||||| |||||||| |||| ||||||| || |||| ||||||||||||||||||| |
|
|
| T |
2672448 |
tatctccatcatgactcaagatttagaatcatccacagggatctcaaggcaagcaatgttctacttgataaagaaatgaatccaaagatatcagattttg |
2672547 |
T |
 |
| Q |
173 |
gt |
174 |
Q |
| |
|
|| |
|
|
| T |
2672548 |
gt |
2672549 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 137
Target Start/End: Complemental strand, 34192689 - 34192604
Alignment:
| Q |
52 |
gggattgctcgggggctgctgtatctccatcaggattctacattaagaatcatacatagagatctcaagacaagcaatattcttct |
137 |
Q |
| |
|
||||||||||| || || || ||||| ||| | ||||||| |||||| || || || |||||||||||||| |||||||||||||| |
|
|
| T |
34192689 |
gggattgctcgaggacttctctatcttcatgaagattctagattaaggattatccacagagatctcaagaccagcaatattcttct |
34192604 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 137
Target Start/End: Original strand, 34207812 - 34207897
Alignment:
| Q |
52 |
gggattgctcgggggctgctgtatctccatcaggattctacattaagaatcatacatagagatctcaagacaagcaatattcttct |
137 |
Q |
| |
|
||||| ||||| || || || ||||| ||| | ||||||| |||||| || || || |||||||||||||| |||||||||||||| |
|
|
| T |
34207812 |
gggatcgctcgaggacttctttatcttcatgaagattctagattaaggattatccacagagatctcaagaccagcaatattcttct |
34207897 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 8414 - 8353
Alignment:
| Q |
55 |
attgctcgggggctgctgtatctccatcaggattctacattaagaatcatacatagagatct |
116 |
Q |
| |
|
|||||||||||||| || ||||| ||||| ||||| | |||| |||||||||| |||||||| |
|
|
| T |
8414 |
attgctcgggggcttctttatcttcatcaagattcaagattacgaatcatacacagagatct |
8353 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 167
Target Start/End: Original strand, 36366410 - 36366507
Alignment:
| Q |
70 |
ctgtatctccatcaggattctacattaagaatcatacatagagatctcaagacaagcaatattcttcttgatattgatatgatcccaaagatatcaga |
167 |
Q |
| |
|
|||||||| || || ||||||| ||| || ||||| ||||||||||| ||| ||||||| ||||| |||||| || |||| |||||||||||||| |
|
|
| T |
36366410 |
ctgtatcttcaccaagattctagatttaggatcatccatagagatcttaaggcaagcaacattctacttgatggagagatgaatccaaagatatcaga |
36366507 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 179
Target Start/End: Complemental strand, 4150969 - 4150885
Alignment:
| Q |
95 |
taagaatcatacatagagatctcaagacaagcaatattcttcttgatattgatatgatcccaaagatatcagattttggtttagc |
179 |
Q |
| |
|
|||| ||||||||||||||||| || ||||||| || | ||||||| ||| ||||| ||||| |||||||| || |||||||| |
|
|
| T |
4150969 |
taaggatcatacatagagatctaaaagcaagcaacatcttacttgatagtgacatgattccaaaaatatcagacttcggtttagc |
4150885 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University