View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4518_high_1 (Length: 519)
Name: NF4518_high_1
Description: NF4518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4518_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 277
Target Start/End: Complemental strand, 28054262 - 28053996
Alignment:
| Q |
11 |
cacagagcaacttacttttttcctaggcaatttccagagaaaaggttcgatgaatcttcaaagagtagtacattagatcacgagaacaaaaaatctccag |
110 |
Q |
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| T |
28054262 |
cacagagcaacttacttttttcctaggcaatttccagagaaaaggttcgatgaatcttcaaagagtagtacattagatcacgagaagaaaaaatctccag |
28054163 |
T |
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| Q |
111 |
tcaaatctacggatacgactttttgcattgaaaacgacctgccgaaaagttcaaacactcctaccaaagacaatctcgcaaaaaactctgcggtttcgga |
210 |
Q |
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| T |
28054162 |
tcaaatctacggatacgactttttgcactgaaaacgacgtgccgaaaagttcaaacactcctaccaaagtcaatctcgcaaaaaactctgcggtttcgga |
28054063 |
T |
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| Q |
211 |
acttggtaaaaagtttcgaaatgaacagaagcaaattgcagcgttttgtgattggttggttgataaa |
277 |
Q |
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| T |
28054062 |
acttggtaaaaagtttcgaaatgaacagaagcaaattgcagcgttttgtgattggttggttgataaa |
28053996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 358 - 502
Target Start/End: Complemental strand, 28053921 - 28053777
Alignment:
| Q |
358 |
tattctacatgaagacgacgaggaggatcgtgagcttctgcttccggattcggcgaaggtgtcttcgccggataaggatgttgttgatgttgatagaagg |
457 |
Q |
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| T |
28053921 |
tattctacatgaagaggacgaggaggatcgtgagcttctgcttccggattcagagaaggtgtcttcgcctgataaggatgttgttgatgttgatagaagg |
28053822 |
T |
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| Q |
458 |
tttgaaagggaggcttcgttatctagattgtcgagtggaagcagt |
502 |
Q |
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| T |
28053821 |
tttgaaagggaggcttcgttatctagattgtcgagtggaagcagt |
28053777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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