View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4518_high_15 (Length: 223)

Name: NF4518_high_15
Description: NF4518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4518_high_15
NF4518_high_15
[»] chr4 (19 HSPs)
chr4 (9-186)||(5046018-5046198)
chr4 (37-190)||(24008398-24008555)
chr4 (142-191)||(12920249-12920298)
chr4 (63-185)||(45920979-45921100)
chr4 (149-186)||(47688461-47688498)
chr4 (142-186)||(7841578-7841622)
chr4 (142-186)||(47687943-47687987)
chr4 (141-186)||(12367940-12367985)
chr4 (149-186)||(43146705-43146742)
chr4 (142-186)||(8247730-8247774)
chr4 (142-186)||(8265395-8265439)
chr4 (142-186)||(43147216-43147260)
chr4 (142-186)||(53732469-53732513)
chr4 (144-186)||(8248497-8248539)
chr4 (144-186)||(8266162-8266204)
chr4 (142-191)||(53148587-53148635)
chr4 (142-186)||(26159596-26159640)
chr4 (142-186)||(53733073-53733117)
chr4 (69-121)||(55001343-55001395)
[»] chr7 (28 HSPs)
chr7 (44-184)||(24389492-24389633)
chr7 (37-186)||(3688417-3688567)
chr7 (37-186)||(25599055-25599205)
chr7 (37-190)||(43928484-43928638)
chr7 (37-186)||(45162002-45162155)
chr7 (37-186)||(29188581-29188733)
chr7 (102-186)||(19067670-19067755)
chr7 (44-161)||(21156857-21156974)
chr7 (142-186)||(30661430-30661474)
chr7 (142-186)||(37949638-37949682)
chr7 (142-186)||(3219521-3219565)
chr7 (146-184)||(5930954-5930992)
chr7 (146-186)||(13784970-13785010)
chr7 (146-186)||(21496962-21497002)
chr7 (146-190)||(24452982-24453026)
chr7 (142-186)||(26636136-26636180)
chr7 (142-186)||(43064368-43064412)
chr7 (139-186)||(3772498-3772545)
chr7 (139-190)||(3903311-3903362)
chr7 (139-186)||(19068367-19068414)
chr7 (149-190)||(39803531-39803573)
chr7 (146-191)||(2533263-2533308)
chr7 (149-186)||(23367661-23367698)
chr7 (157-190)||(23368217-23368250)
chr7 (145-181)||(21156202-21156238)
chr7 (146-186)||(25342530-25342570)
chr7 (146-186)||(25343336-25343376)
chr7 (139-190)||(31953368-31953420)
[»] chr2 (15 HSPs)
chr2 (49-191)||(26587177-26587320)
chr2 (81-186)||(18924760-18924866)
chr2 (105-186)||(23343813-23343895)
chr2 (37-184)||(36237667-36237817)
chr2 (149-186)||(18174651-18174688)
chr2 (142-186)||(18174133-18174177)
chr2 (142-191)||(22559887-22559936)
chr2 (37-121)||(33629314-33629398)
chr2 (141-186)||(1313511-1313556)
chr2 (141-190)||(15774951-15775000)
chr2 (164-193)||(42181894-42181923)
chr2 (141-186)||(42182588-42182633)
chr2 (146-186)||(1297101-1297141)
chr2 (146-186)||(9275620-9275660)
chr2 (146-186)||(22560546-22560586)
[»] chr3 (12 HSPs)
chr3 (39-186)||(13476235-13476383)
chr3 (37-186)||(45081271-45081422)
chr3 (37-186)||(46150599-46150748)
chr3 (142-192)||(52102424-52102474)
chr3 (146-190)||(13476996-13477040)
chr3 (146-190)||(41475293-41475337)
chr3 (142-186)||(52266429-52266472)
chr3 (139-186)||(48765042-48765089)
chr3 (154-191)||(23772602-23772639)
chr3 (146-186)||(981701-981741)
chr3 (146-186)||(17605740-17605780)
chr3 (139-183)||(49089884-49089928)
[»] chr1 (18 HSPs)
chr1 (39-186)||(4433122-4433270)
chr1 (56-186)||(4134682-4134813)
chr1 (102-186)||(34309164-34309249)
chr1 (102-186)||(23026616-23026701)
chr1 (141-190)||(26119393-26119442)
chr1 (139-192)||(8549462-8549515)
chr1 (144-193)||(33504102-33504151)
chr1 (149-190)||(40021444-40021485)
chr1 (139-186)||(25469058-25469105)
chr1 (139-186)||(27256684-27256731)
chr1 (139-186)||(34308506-34308553)
chr1 (142-189)||(49681648-49681695)
chr1 (142-191)||(11548828-11548877)
chr1 (142-183)||(36389811-36389852)
chr1 (141-185)||(23311263-23311307)
chr1 (142-190)||(27257398-27257446)
chr1 (150-186)||(32038510-32038546)
chr1 (147-183)||(48560992-48561028)
[»] chr6 (8 HSPs)
chr6 (37-185)||(19311035-19311185)
chr6 (109-186)||(19654003-19654081)
chr6 (142-186)||(3623721-3623765)
chr6 (146-190)||(7449806-7449850)
chr6 (149-184)||(3623210-3623245)
chr6 (147-186)||(21133206-21133245)
chr6 (146-191)||(12344922-12344967)
chr6 (142-190)||(4940224-4940272)
[»] chr5 (20 HSPs)
chr5 (70-154)||(43248650-43248735)
chr5 (59-184)||(22212869-22212995)
chr5 (63-186)||(19128803-19128925)
chr5 (142-192)||(236207-236257)
chr5 (142-184)||(1896853-1896895)
chr5 (149-186)||(17071257-17071294)
chr5 (149-186)||(34600294-34600331)
chr5 (142-186)||(236319-236363)
chr5 (142-186)||(1896233-1896277)
chr5 (142-186)||(17071768-17071812)
chr5 (142-190)||(26874425-26874473)
chr5 (142-186)||(34600805-34600849)
chr5 (146-186)||(235625-235665)
chr5 (139-186)||(29046062-29046109)
chr5 (139-186)||(33005554-33005601)
chr5 (63-121)||(9407962-9408020)
chr5 (144-190)||(14479723-14479769)
chr5 (145-186)||(43248591-43248632)
chr5 (146-182)||(236907-236943)
chr5 (145-193)||(33587168-33587216)
[»] chr8 (18 HSPs)
chr8 (37-184)||(25929297-25929445)
chr8 (37-186)||(17725522-17725672)
chr8 (50-190)||(42007540-42007680)
chr8 (37-190)||(28930724-28930878)
chr8 (37-137)||(26395260-26395359)
chr8 (102-191)||(3418351-3418441)
chr8 (142-190)||(22649105-22649153)
chr8 (144-189)||(39205506-39205551)
chr8 (146-190)||(32979077-32979121)
chr8 (139-190)||(26395510-26395561)
chr8 (139-186)||(31641545-31641592)
chr8 (164-197)||(45400-45433)
chr8 (149-186)||(31602050-31602087)
chr8 (146-186)||(26654356-26654396)
chr8 (139-187)||(31603000-31603048)
chr8 (142-186)||(37733574-37733618)
chr8 (146-190)||(38575588-38575632)
chr8 (146-186)||(38576280-38576320)
[»] scaffold0085 (1 HSPs)
scaffold0085 (146-190)||(15913-15957)


Alignment Details
Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 9 - 186
Target Start/End: Complemental strand, 5046198 - 5046018
Alignment:
Q  9 aagaagagtattttaattttgcaacaagat--gataagatcatgttttcaatttgagttttataatcattaaatacaataatagtgtgtgatcacaagaa 106  Q
    |||| |||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5046198 aagaggagtattttaattttgcaacaagatatgataagatcatgtttccaatttgagttttataatcattaaatacaataatagtgtgtgatcacaagaa 5046099  T
Q  107 aggatacacaataaagagaaatatggcact-aaattagcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5046098 aggatacacaataaagagaaatatggcactaaaattagcctttgattaaataaaataaacggttgagatttggtgtcaacg 5046018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 37 - 190
Target Start/End: Complemental strand, 24008555 - 24008398
Alignment:
Q  37 atgataagatcatgttttcaatttgagttttataatcattaaatacaataatagtgtgtgatc---acaagaaaggatacacaataaagagaaatatggc 133  Q
    |||||| ||| |||||| ||||||  ||||| ||||||||||| ||||||||||||||||||    | || ||| ||||||||||||| | |||| ||||    
T  24008555 atgataggattatgtttccaatttaggttttgtaatcattaaaaacaataatagtgtgtgattgaaaaaaaaaaagatacacaataaataaaaatgtggc 24008456  T
Q  134 actaa-attagcctttgattaaataaaataaacggttgagatttggtgtcaacggatc 190  Q
    ||||  |||| ||||||||||||||| || ||| ||||||||||||||||||||||||    
T  24008455 actattattaacctttgattaaataagatcaacagttgagatttggtgtcaacggatc 24008398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 12920249 - 12920298
Alignment:
Q  142 agcctttgattaaataaaataaacggttgagatttggtgtcaacggatct 191  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  12920249 agccattgattaaataaaataaacggttgagatttggtgtcaacgaatct 12920298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 185
Target Start/End: Original strand, 45920979 - 45921100
Alignment:
Q  63 gttttataatcattaaatacaataatagtgtgtgatcacaagaaaggatacacaataaagagaaatatggcactaaattagcctttgattaaataaaata 162  Q
    ||||| |||||||| |||||||||||||||||||||   || | |||||||| |||||| | |||||||| |    || | || || |||||||||||||    
T  45920979 gttttttaatcattgaatacaataatagtgtgtgattgaaaaagaggatacaaaataaata-aaatatggaaagttatcatccattcattaaataaaata 45921077  T
Q  163 aacggttgagatttggtgtcaac 185  Q
    ||||||| |||||||||||||||    
T  45921078 aacggttaagatttggtgtcaac 45921100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 47688461 - 47688498
Alignment:
Q  149 gattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    ||||||||||||||||||||||||||||||||||||||    
T  47688461 gattaaataaaataaacggttgagatttggtgtcaacg 47688498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 7841622 - 7841578
Alignment:
Q  142 agcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||    
T  7841622 agcctttgattaaataaaatatacggatgagatttggtgtcaacg 7841578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 47687987 - 47687943
Alignment:
Q  142 agcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |||| |||||||||||||||||||||||| |||||||||||||||    
T  47687987 agccattgattaaataaaataaacggttgcgatttggtgtcaacg 47687943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 12367985 - 12367940
Alignment:
Q  141 tagcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |||||||||||||||||||||| | |||| ||||||||||||||||    
T  12367985 tagcctttgattaaataaaatagagggtttagatttggtgtcaacg 12367940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 43146742 - 43146705
Alignment:
Q  149 gattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  43146742 gattaaataaaataaacggttaagatttggtgtcaacg 43146705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 8247774 - 8247730
Alignment:
Q  142 agcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    ||||||||||||||||||||| |||||| |||||| |||||||||    
T  8247774 agcctttgattaaataaaatagacggttaagattttgtgtcaacg 8247730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 8265439 - 8265395
Alignment:
Q  142 agcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    ||||||||||||||||||||| |||||| |||||| |||||||||    
T  8265439 agcctttgattaaataaaatagacggttaagattttgtgtcaacg 8265395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 43147216 - 43147260
Alignment:
Q  142 agcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |||| ||||||||||||||||||||||||  ||||||||||||||    
T  43147216 agccattgattaaataaaataaacggttgcaatttggtgtcaacg 43147260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 53732513 - 53732469
Alignment:
Q  142 agcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |||||||||| |||||||||| ||||||||||||| |||||||||    
T  53732513 agcctttgataaaataaaatagacggttgagatttagtgtcaacg 53732469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 8248497 - 8248539
Alignment:
Q  144 cctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |||||||| |||||||||| |||||| ||||||||||||||||    
T  8248497 cctttgatcaaataaaatagacggttaagatttggtgtcaacg 8248539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 8266162 - 8266204
Alignment:
Q  144 cctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |||||||| |||||||||| |||||| ||||||||||||||||    
T  8266162 cctttgatcaaataaaatagacggttaagatttggtgtcaacg 8266204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 53148587 - 53148635
Alignment:
Q  142 agcctttgattaaataaaataaacggttgagatttggtgtcaacggatct 191  Q
    ||||||||||| || |||||| ||||||||||||||||||||||| ||||    
T  53148587 agcctttgatttaa-aaaatagacggttgagatttggtgtcaacgaatct 53148635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 26159596 - 26159640
Alignment:
Q  142 agcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |||||||||||||||| |||  ||||||| |||||||||||||||    
T  26159596 agcctttgattaaatataatgtacggttgcgatttggtgtcaacg 26159640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 53733073 - 53733117
Alignment:
Q  142 agcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |||||||||| |||||||||| | ||||||||||| |||||||||    
T  53733073 agcctttgatcaaataaaatagatggttgagatttagtgtcaacg 53733117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 55001343 - 55001395
Alignment:
Q  69 taatcattaaatacaataatagtgtgtgatcacaagaaaggatacacaataaa 121  Q
    |||||||| |||||||||||||||||||||   || | |||||||||||||||    
T  55001343 taatcattgaatacaataatagtgtgtgattgaaaaagaggatacacaataaa 55001395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 44 - 184
Target Start/End: Original strand, 24389492 - 24389633
Alignment:
Q  44 gatcatgttttcaatttgagttttataatcattaaatacaataatagtgtgtgatcacaagaaaggatacacaataaagagaaatatggcact-aaatta 142  Q
    |||||||||||||||||||||||| |||||||| |||||| ||||||||||||||  |||||||| |||||||||||||||||| |||||||| ||||||    
T  24389492 gatcatgttttcaatttgagttttttaatcattgaatacagtaatagtgtgtgattgcaagaaagaatacacaataaagagaaacatggcactaaaatta 24389591  T
Q  143 gcctttgattaaataaaataaacggttgagatttggtgtcaa 184  Q
    | |||||||||||||||||||| |||||||||||||||||||    
T  24389592 gtctttgattaaataaaataaatggttgagatttggtgtcaa 24389633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 186
Target Start/End: Complemental strand, 3688567 - 3688417
Alignment:
Q  37 atgataagatcatgttttcaatttgagttttataatcattaaatacaataatagtgtgtgatcacaagaaaggatacacaataaagagaaatatggcact 136  Q
    |||||| |||| ||||| || |||| ||||| ||||||||||| ||||||||||||||||||   |||||||||||||||||||| | |||  || ||||    
T  3688567 atgatacgatcttgtttccagtttgggttttgtaatcattaaaaacaataatagtgtgtgattgaaagaaaggatacacaataaataaaaacgtgtcact 3688468  T
Q  137 a-aattagcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    | ||||| |||||||| |||||||||||| || | ||||||||||||||||    
T  3688467 ataattaacctttgatcaaataaaataaatggataagatttggtgtcaacg 3688417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 186
Target Start/End: Complemental strand, 25599205 - 25599055
Alignment:
Q  37 atgataagatcatgttttcaatttgagttttataatcattaaatacaataatagtgtgtgatcacaagaaaggatacacaataaagagaaatatggcact 136  Q
    |||||| ||| |||||| ||||||  ||||| ||||||||||| | ||||||||||||||||   || ||||||||||||||||| | |||| |||||||    
T  25599205 atgataggattatgtttccaatttaggttttgtaatcattaaaaataataatagtgtgtgattgaaaaaaaggatacacaataaataaaaatgtggcact 25599106  T
Q  137 a-aattagcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |  |||| ||||||||||||||| || |||| |||||||||||||||||||    
T  25599105 attattaacctttgattaaataagatcaacgattgagatttggtgtcaacg 25599055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 190
Target Start/End: Complemental strand, 43928638 - 43928484
Alignment:
Q  37 atgataagatcatgttttcaatttgagttttataatcattaaatacaataatagtgtgtgatcacaagaaaggatacacaataaagagaaatatggcact 136  Q
    |||||| ||| |||||| |||||   ||||| ||||||||||| ||||||||||||||||||   || ||||||||||||||||| | |||| |||||||    
T  43928638 atgataggattatgtttccaattgaggttttgtaatcattaaaaacaataatagtgtgtgattgaaaaaaaggatacacaataaataaaaatgtggcact 43928539  T
Q  137 a-aattagcctttgattaaataaaataaacggttgagatttggtgtcaacggatc 190  Q
    |  |||| ||||||||||||||| || ||  ||||||||||||||||||||||||    
T  43928538 attattaacctttgattaaataagatcaatagttgagatttggtgtcaacggatc 43928484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 37 - 186
Target Start/End: Complemental strand, 45162155 - 45162002
Alignment:
Q  37 atgataagatcatgttttcaatttgagttttataatcattaaatacaataatagtgtgtgatc---acaagaaaggatacacaataaagagaaatatggc 133  Q
    |||||| ||| |||||| ||||||  ||||| ||||||||||| ||||||||||||||||||    | || ||||||||||||||||| | |||| ||||    
T  45162155 atgataggattatgtttccaatttaggttttgtaatcattaaaaacaataatagtgtgtgattgaaaaaaaaaaggatacacaataaataaaaatgtggc 45162056  T
Q  134 actaa-attagcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    ||||  |||| ||||||||||||||| || ||| ||||||||||||||||||||    
T  45162055 actattattaacctttgattaaataagatcaacagttgagatttggtgtcaacg 45162002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 186
Target Start/End: Original strand, 29188581 - 29188733
Alignment:
Q  37 atgataagatcatgttttcaatttgagttttataatcattaaatacaataatagtgtgtgat--cacaagaaaggatacacaataaagagaaatatggca 134  Q
    |||||| ||| |||||| ||||||  ||||| ||||||||||| ||||||||||||||||||   | || ||| ||||||||||||| | |||| |||||    
T  29188581 atgatatgattatgtttccaatttaggttttgtaatcattaaaaacaataatagtgtgtgattgaaaaaaaaaagatacacaataaataaaaatgtggca 29188680  T
Q  135 cta-aattagcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |||  |||| | ||||||||||||| || ||| ||||||||||||||||||||    
T  29188681 ctattattaacttttgattaaataagatcaacagttgagatttggtgtcaacg 29188733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 19067755 - 19067670
Alignment:
Q  102 aagaaaggatacacaataaagagaaatatggcactaa-attagcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |||||| |||||| |||||| |||||| ||||| ||  ||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  19067755 aagaaatgatacataataaatagaaatgtggcattattattggcctttgattaaataaaatcaacggttgagatttggtgtcaacg 19067670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 161
Target Start/End: Original strand, 21156857 - 21156974
Alignment:
Q  44 gatcatgttttcaatttgagttttataatcattaaatacaataatagtgtgtgatcacaagaaaggatacacaataaagagaaatatggcacta-aatta 142  Q
    |||||||||||||||||| ||||| |||||||| || |||||||| |||||||||   ||||||||||||||  |||| | |||| |||||||| |||||    
T  21156857 gatcatgttttcaatttgggttttgtaatcattgaaaacaataatggtgtgtgattgaaagaaaggatacaccgtaaataaaaatgtggcactataatta 21156956  T
Q  143 gcctttgattaaataaaat 161  Q
    | | ||||| |||||||||    
T  21156957 g-cattgataaaataaaat 21156974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 30661430 - 30661474
Alignment:
Q  142 agcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  30661430 agcctttgattaaataaaatcaacggttgagatttggtgtcaacg 30661474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 37949682 - 37949638
Alignment:
Q  142 agcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  37949682 agcctttgattaaataaaatcaacggttgagatttggtgtcaacg 37949638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 3219521 - 3219565
Alignment:
Q  142 agcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |||| |||||||||||||||||||||||||||||| |||||||||    
T  3219521 agccattgattaaataaaataaacggttgagattttgtgtcaacg 3219565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 5930954 - 5930992
Alignment:
Q  146 tttgattaaataaaataaacggttgagatttggtgtcaa 184  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  5930954 tttgattaaataaaatagacggttgagatttggtgtcaa 5930992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 13785010 - 13784970
Alignment:
Q  146 tttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    ||||||||||| | |||||||||||||||||||||||||||    
T  13785010 tttgattaaatgagataaacggttgagatttggtgtcaacg 13784970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 21496962 - 21497002
Alignment:
Q  146 tttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    ||||||||||| | |||||||||||||||||||||||||||    
T  21496962 tttgattaaatgagataaacggttgagatttggtgtcaacg 21497002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 24453026 - 24452982
Alignment:
Q  146 tttgattaaataaaataaacggttgagatttggtgtcaacggatc 190  Q
    ||||||||||| ||||  |||||||||||||||||||||||||||    
T  24453026 tttgattaaatgaaatgtacggttgagatttggtgtcaacggatc 24452982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 26636180 - 26636136
Alignment:
Q  142 agcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |||||||||||||||| |||  |||||||||||||||||||||||    
T  26636180 agcctttgattaaatataatgtacggttgagatttggtgtcaacg 26636136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 43064412 - 43064368
Alignment:
Q  142 agcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    ||||||||||| ||||||||| |||||||||||||| ||||||||    
T  43064412 agcctttgattgaataaaatagacggttgagatttgatgtcaacg 43064368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 3772498 - 3772545
Alignment:
Q  139 attagcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    ||||||||||||||  | |||||| |||||||||||||||||||||||    
T  3772498 attagcctttgattttaaaaaatagacggttgagatttggtgtcaacg 3772545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 3903311 - 3903362
Alignment:
Q  139 attagcctttgattaaataaaataaacggttgagatttggtgtcaacggatc 190  Q
    |||| |||||||||||||||||| || | |||| ||||||||||||||||||    
T  3903311 attatcctttgattaaataaaatgaatgattgatatttggtgtcaacggatc 3903362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 19068367 - 19068414
Alignment:
Q  139 attagcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |||| |||||||| ||||||||| ||||||||| ||||||||||||||    
T  19068367 attatcctttgatcaaataaaatcaacggttgaaatttggtgtcaacg 19068414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 39803531 - 39803573
Alignment:
Q  149 gattaaataaaa-taaacggttgagatttggtgtcaacggatc 190  Q
    ||||||| |||| ||||||||||||||||||||||||||||||    
T  39803531 gattaaaaaaaagtaaacggttgagatttggtgtcaacggatc 39803573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 2533263 - 2533308
Alignment:
Q  146 tttgattaaataaaataaacggttgagatttggtgtcaacggatct 191  Q
    ||||||||||| ||| ||| ||||||||||||||||||||| ||||    
T  2533263 tttgattaaatgaaacaaatggttgagatttggtgtcaacgaatct 2533308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 23367698 - 23367661
Alignment:
Q  149 gattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  23367698 gattaaacaaaatacacggttgagatttggtgtcaacg 23367661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 190
Target Start/End: Original strand, 23368217 - 23368250
Alignment:
Q  157 aaaataaacggttgagatttggtgtcaacggatc 190  Q
    |||||| |||||||||||||||||||||||||||    
T  23368217 aaaatacacggttgagatttggtgtcaacggatc 23368250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 21156238 - 21156202
Alignment:
Q  145 ctttgattaaataaaataaacggttgagatttggtgt 181  Q
    |||||||||||| |||||||||||||| |||||||||    
T  21156238 ctttgattaaattaaataaacggttgaaatttggtgt 21156202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 25342570 - 25342530
Alignment:
Q  146 tttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    ||||||||||||||||  | |||||||||||||||||||||    
T  25342570 tttgattaaataaaattgatggttgagatttggtgtcaacg 25342530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 25343376 - 25343336
Alignment:
Q  146 tttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    ||||||||||||||||  | |||||||||||||||||||||    
T  25343376 tttgattaaataaaattgatggttgagatttggtgtcaacg 25343336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 31953420 - 31953368
Alignment:
Q  139 attagcctttg-attaaataaaataaacggttgagatttggtgtcaacggatc 190  Q
    ||||||||||| || |||| |||| ||||||| ||||||||||||||||||||    
T  31953420 attagcctttggatcaaatgaaatcaacggttaagatttggtgtcaacggatc 31953368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 6e-33; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 49 - 191
Target Start/End: Complemental strand, 26587320 - 26587177
Alignment:
Q  49 tgttttcaatttgagttttataatcattaaatacaataatagtgtgtgatcacaagaaaggatacacaataaagagaaatatggcactaaa-ttagcctt 147  Q
    ||||| ||||||||||||| |||||||| | |||||||||||||| ||||  ||||||| |||||| | |||||||||| ||| || |||| ||||||||    
T  26587320 tgtttccaatttgagttttttaatcattgattacaataatagtgtatgattgcaagaaatgatacatattaaagagaaacatgacattaaaattagcctt 26587221  T
Q  148 tgattaaataaaataaacggttgagatttggtgtcaacggatct 191  Q
    |||||||||||| ||||||||||||||||| |||||||| ||||    
T  26587220 tgattaaataaattaaacggttgagatttgatgtcaacgaatct 26587177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 186
Target Start/End: Complemental strand, 18924866 - 18924760
Alignment:
Q  81 acaataatagtgtgtgatcacaagaaaggatacacaataaagagaaatatggcacta-aattagcctttgattaaataaaataaacggttgagatttggt 179  Q
    ||||||||||||| ||||    ||||||||| ||||||||| | |||  |||||||| ||||||||||||||||||||||||||| ||||   |||| ||    
T  18924866 acaataatagtgtatgattgagagaaaggattcacaataaatacaaacgtggcactataattagcctttgattaaataaaataaatggttagaatttagt 18924767  T
Q  180 gtcaacg 186  Q
    |||||||    
T  18924766 gtcaacg 18924760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 23343895 - 23343813
Alignment:
Q  105 aaaggatacacaataaagagaaatatggcactaa-attagcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    ||||||||||||||||| | |||| ||||||||  |||| ||||||||||||||| || ||| ||||||||||| ||||||||    
T  23343895 aaaggatacacaataaataaaaatgtggcactattattaacctttgattaaataagatcaacagttgagatttgatgtcaacg 23343813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 184
Target Start/End: Complemental strand, 36237817 - 36237667
Alignment:
Q  37 atgataagatcatgttttcaatttgagttttataa-tcattaaatacaataatagtgtgtgatcacaagaaaggatacacaataaagagaaa-tatggca 134  Q
    |||||| |||||||||| ||||||  ||||| ||| ||||| || ||||||||||||||||||   ||  |||| ||||||||||| | ||| | ||||     
T  36237817 atgatatgatcatgtttccaatttcggttttgtaaatcattgaaaacaataatagtgtgtgattgaaaagaagggtacacaataaataaaaaatgtggct 36237718  T
Q  135 ctaaatt-agcctttgattaaataaaataaacggttgagatttggtgtcaa 184  Q
    ||| ||| | |||||||| |||||||||||| |||||| ||||||||||||    
T  36237717 ctatatttaacctttgatcaaataaaataaatggttgaaatttggtgtcaa 36237667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 18174651 - 18174688
Alignment:
Q  149 gattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18174651 gattaaataaaataaacggttgagatttggtgtcaacg 18174688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 18174177 - 18174133
Alignment:
Q  142 agcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |||| |||||||||||||||||||||||| |||||||||||||||    
T  18174177 agccattgattaaataaaataaacggttgcgatttggtgtcaacg 18174133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 22559936 - 22559887
Alignment:
Q  142 agcctttgattaaataaaataaacggttgagatttggtgtcaacggatct 191  Q
    |||||||||||||||| |||  ||||||||||||||||||||||| ||||    
T  22559936 agcctttgattaaatataatgtacggttgagatttggtgtcaacgaatct 22559887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 33629314 - 33629398
Alignment:
Q  37 atgataagatcatgttttcaatttgagttttataatcattaaatacaataatagtgtgtgatcacaagaaaggatacacaataaa 121  Q
    |||||| ||| |||||| ||||||  ||||| ||||||||||| | ||||||||||||||||   |  |||||||||||||||||    
T  33629314 atgataggattatgtttccaatttaggttttgtaatcattaaaaataataatagtgtgtgattgaataaaaggatacacaataaa 33629398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 1313556 - 1313511
Alignment:
Q  141 tagcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |||||||||||||||||||||| |  ||||| ||||||||||||||    
T  1313556 tagcctttgattaaataaaatatatcgttgaaatttggtgtcaacg 1313511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 15774951 - 15775000
Alignment:
Q  141 tagcctttgattaaataaaataaacggttgagatttggtgtcaacggatc 190  Q
    |||||||||||||||  | ||  |||||||||||||||||||||||||||    
T  15774951 tagcctttgattaaaatagattgacggttgagatttggtgtcaacggatc 15775000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 193
Target Start/End: Complemental strand, 42181923 - 42181894
Alignment:
Q  164 acggttgagatttggtgtcaacggatcttg 193  Q
    ||||||||||||||||||||||||||||||    
T  42181923 acggttgagatttggtgtcaacggatcttg 42181894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 42182588 - 42182633
Alignment:
Q  141 tagcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    ||||||||||| ||||| |||  |||||||||||||||||||||||    
T  42182588 tagcctttgatcaaatataatctacggttgagatttggtgtcaacg 42182633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 1297101 - 1297141
Alignment:
Q  146 tttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    ||||||||||||||||  | |||||||||||||||||||||    
T  1297101 tttgattaaataaaattgatggttgagatttggtgtcaacg 1297141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 9275660 - 9275620
Alignment:
Q  146 tttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    ||||||||||||||||  | |||||||||||||||||||||    
T  9275660 tttgattaaataaaattgatggttgagatttggtgtcaacg 9275620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 22560546 - 22560586
Alignment:
Q  146 tttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |||||||||||| |||  |||||||||||||||||||||||    
T  22560546 tttgattaaatataatgtacggttgagatttggtgtcaacg 22560586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 186
Target Start/End: Complemental strand, 13476383 - 13476235
Alignment:
Q  39 gataagatcatgttttcaatttgagttttataatcattaaatacaataatagtgtgtgatcacaagaaaggatacacaataaagagaaatatggcacta- 137  Q
    |||| |||||| ||| ||||||||||||| |||||||| || |||||||||||||||| |   |||||||||||||||||||| | |||| ||||||||     
T  13476383 gatacgatcatctttccaatttgagttttgtaatcatttaaaacaataatagtgtgtggttgaaagaaaggatacacaataaataaaaatgtggcactat 13476284  T
Q  138 aattagcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    | ||| |||||||| |||| |||| ||||| ||||||||||||||||||    
T  13476283 atttaacctttgatcaaattaaatcaacggatgagatttggtgtcaacg 13476235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 37 - 186
Target Start/End: Original strand, 45081271 - 45081422
Alignment:
Q  37 atgataagatcatgttttcaatttgagttttataa-tcattaaatacaataatagtgtgtgatcacaagaaaggatacacaataaagagaaatatggcac 135  Q
    |||||| |||||||||| ||||||  ||||| ||| ||||| || ||||||||| ||||||||   ||  |||| ||||||||||| | |||| |||| |    
T  45081271 atgatatgatcatgtttccaatttcggttttgtaaatcattgaaaacaataataatgtgtgattgaaaagaagggtacacaataaaaaaaaatgtggctc 45081370  T
Q  136 taaatt-agcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    || ||| |||||||||| |||||||||||| |||||||||||||||||||||    
T  45081371 tatatttagcctttgatcaaataaaataaatggttgagatttggtgtcaacg 45081422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 37 - 186
Target Start/End: Original strand, 46150599 - 46150748
Alignment:
Q  37 atgataagatcatgttttcaatttgagttttataa-tcattaaatacaataatagtgtgtgatcacaagaaaggatacacaataaagagaaatatggcac 135  Q
    |||||| |||||||||| ||||||  ||||| ||| ||||| || ||||||||||||||||||   ||  |||| ||||||||||| | |||| |||| |    
T  46150599 atgatatgatcatgtttccaatttcggttttgtaaatcattgaa-acaataatagtgtgtgattgaaaagaagggtacacaataaaaa-aaatgtggctc 46150696  T
Q  136 taaatt-agcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    || ||| |||||||||| |||||||||||| |||||||||||||||||||||    
T  46150697 tatatttagcctttgatcaaataaaataaatggttgagatttggtgtcaacg 46150748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 52102424 - 52102474
Alignment:
Q  142 agcctttgattaaataaaataaacggttgagatttggtgtcaacggatctt 192  Q
    |||||||||| |||||||||| ||||| |||||||||||||||||||||||    
T  52102424 agcctttgatcaaataaaatagacggtcgagatttggtgtcaacggatctt 52102474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 13476996 - 13477040
Alignment:
Q  146 tttgattaaataaaataaacggttgagatttggtgtcaacggatc 190  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||    
T  13476996 tttgattaaatgaaataaacgattgagatttggtgtcaacggatc 13477040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 41475293 - 41475337
Alignment:
Q  146 tttgattaaataaaataaacggttgagatttggtgtcaacggatc 190  Q
    |||||||||||| |||  |||||||||||||||||||||||||||    
T  41475293 tttgattaaatataatgtacggttgagatttggtgtcaacggatc 41475337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 52266429 - 52266472
Alignment:
Q  142 agcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |||||||||||||| |||||| |||||||||||||||||||||||    
T  52266429 agcctttgattaaa-aaaatagacggttgagatttggtgtcaacg 52266472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 48765042 - 48765089
Alignment:
Q  139 attagcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    ||||||||||||||||| | ||| ||||||| ||||||||||||||||    
T  48765042 attagcctttgattaaaaacaatcaacggttaagatttggtgtcaacg 48765089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 23772639 - 23772602
Alignment:
Q  154 aataaaataaacggttgagatttggtgtcaacggatct 191  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  23772639 aataaaatagatggttgagatttggtgtcaacggatct 23772602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 981741 - 981701
Alignment:
Q  146 tttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    ||||||||||| ||||  |||||||||||||||||||||||    
T  981741 tttgattaaatgaaatgtacggttgagatttggtgtcaacg 981701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 17605780 - 17605740
Alignment:
Q  146 tttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    ||||||||||| ||||| |||||||| ||||||||||||||    
T  17605780 tttgattaaatgaaatagacggttgaaatttggtgtcaacg 17605740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 49089928 - 49089884
Alignment:
Q  139 attagcctttgattaaataaaataaacggttgagatttggtgtca 183  Q
    |||| ||||| || ||||||||| |||||||||||||||||||||    
T  49089928 attatcctttaatcaaataaaatcaacggttgagatttggtgtca 49089884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 186
Target Start/End: Complemental strand, 4433270 - 4433122
Alignment:
Q  39 gataagatcatgttttcaatttgagttttataatcattaaatacaataatagtgtgtgatcacaagaaaggatacacaataaagagaaatatggcacta- 137  Q
    |||| |||||| ||| ||||||||||||| |||||||| || ||||||||||||||||||   |||||||||| ||||||||| | |||| ||||||||     
T  4433270 gatacgatcatctttccaatttgagttttgtaatcatttaaaacaataatagtgtgtgattgaaagaaaggatgcacaataaataaaaatgtggcactat 4433171  T
Q  138 aattagcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    | ||| |||||||| |||| |||| ||||| ||||||||||||||||||    
T  4433170 atttaacctttgatcaaattaaatcaacggatgagatttggtgtcaacg 4433122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 4134682 - 4134813
Alignment:
Q  56 aatttgagttttataatcattaaatacaataatagtgtgtgatcacaagaaaggatacacaataaagagaaatatggcacta-aattagcctttgattaa 154  Q
    |||||| ||||| ||||||||||| ||||||||||||||||||   |||||| ||||||||||||| | |||| |||||||| ||||| ||||||||| |    
T  4134682 aatttgggttttgtaatcattaaaaacaataatagtgtgtgattgaaagaaatgatacacaataaataaaaatgtggcactataattaacctttgattta 4134781  T
Q  155 ataaaataaacggttgagatttggtgtcaacg 186  Q
    |||||||||||||  ||||||| |||||||||    
T  4134782 ataaaataaacggccgagattttgtgtcaacg 4134813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 34309164 - 34309249
Alignment:
Q  102 aagaaaggatacacaataaagagaaatatggcactaa-attagcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |||||| |||||| |||||| |||||| ||||| ||  ||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  34309164 aagaaatgatacataataaatagaaatgtggcattattattggcctttgattaaataaaatcaacggttgagatttggtgtcaacg 34309249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 23026701 - 23026616
Alignment:
Q  102 aagaaaggatacacaataaagagaaatatggcacta-aattagcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |||||||||||||||||||| | |||  |||||||| |||||  ||||||||||||||||||||  ||||||||||| ||||||||    
T  23026701 aagaaaggatacacaataaatataaacgtggcactataattaatctttgattaaataaaataaatagttgagatttgatgtcaacg 23026616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 26119393 - 26119442
Alignment:
Q  141 tagcctttgattaaataaaataaacggttgagatttggtgtcaacggatc 190  Q
    |||||||||||||||||||||| | |||| ||||||||||||||||||||    
T  26119393 tagcctttgattaaataaaatagagggtttagatttggtgtcaacggatc 26119442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 8549462 - 8549515
Alignment:
Q  139 attagcctttgattaaataaaataaacggttgagatttggtgtcaacggatctt 192  Q
    |||| ||||||||||||||||||  || |||||||||| |||||||||||||||    
T  8549462 attaacctttgattaaataaaatgtacagttgagatttagtgtcaacggatctt 8549515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 33504151 - 33504102
Alignment:
Q  144 cctttgattaaataaaataaacggttgagatttggtgtcaacggatcttg 193  Q
    ||||||||| ||||||||  | ||||||||||||||||||||||||||||    
T  33504151 cctttgattgaataaaatggatggttgagatttggtgtcaacggatcttg 33504102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 190
Target Start/End: Complemental strand, 40021485 - 40021444
Alignment:
Q  149 gattaaataaaataaacggttgagatttggtgtcaacggatc 190  Q
    ||||||||||| || |||||||||||||||||||||||||||    
T  40021485 gattaaataaattagacggttgagatttggtgtcaacggatc 40021444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 25469058 - 25469105
Alignment:
Q  139 attagcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    ||||||||||||||||| | ||| ||||||| ||||||||||||||||    
T  25469058 attagcctttgattaaaaacaatcaacggttaagatttggtgtcaacg 25469105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 27256684 - 27256731
Alignment:
Q  139 attagcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |||| |||||||| ||||||||| ||||||||| ||||||||||||||    
T  27256684 attatcctttgatcaaataaaatcaacggttgaaatttggtgtcaacg 27256731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 34308553 - 34308506
Alignment:
Q  139 attagcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |||| |||||||| ||||||||| ||||||||| ||||||||||||||    
T  34308553 attatcctttgatcaaataaaatcaacggttgaaatttggtgtcaacg 34308506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 49681648 - 49681695
Alignment:
Q  142 agcctttgattaaataaaataaacggttgagatttggtgtcaacggat 189  Q
    |||||||||| |||||||||  | ||||||||||||||||||||||||    
T  49681648 agcctttgatcaaataaaatcgatggttgagatttggtgtcaacggat 49681695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 11548877 - 11548828
Alignment:
Q  142 agcctttgattaaataaaataaacggttgagatttggtgtcaacggatct 191  Q
    |||||||||| |||||||||||| | ||||||||| ||||||||| ||||    
T  11548877 agcctttgatcaaataaaataaatgattgagatttagtgtcaacgaatct 11548828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 36389852 - 36389811
Alignment:
Q  142 agcctttgattaaataaaataaacggttgagatttggtgtca 183  Q
    |||||||||| |||||||||| ||||| ||||||||||||||    
T  36389852 agcctttgatgaaataaaatagacggtcgagatttggtgtca 36389811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 23311307 - 23311263
Alignment:
Q  141 tagcctttgattaaataaaataaacggttgagatttggtgtcaac 185  Q
    ||||||||||||||||||| || | | ||||||||||||||||||    
T  23311307 tagcctttgattaaataaattatatgtttgagatttggtgtcaac 23311263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 27257398 - 27257446
Alignment:
Q  142 agcctttgattaaataaaataaacggttgagatttggtgtcaacggatc 190  Q
    |||||||||||||||| |||  ||| ||||||||||||||||| |||||    
T  27257398 agcctttgattaaatataatgtacgattgagatttggtgtcaatggatc 27257446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 32038546 - 32038510
Alignment:
Q  150 attaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |||||||||| || |||||||||||||||||||||||    
T  32038546 attaaataaattagacggttgagatttggtgtcaacg 32038510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 48561028 - 48560992
Alignment:
Q  147 ttgattaaataaaataaacggttgagatttggtgtca 183  Q
    |||||| || |||||||||||||||||||||||||||    
T  48561028 ttgatttaaaaaaataaacggttgagatttggtgtca 48560992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 185
Target Start/End: Complemental strand, 19311185 - 19311035
Alignment:
Q  37 atgataagatcatgttttcaatttgagttttataatcattaaatacaataatagtgtgtga-tcacaagaaaggatacacaataaagagaaatatggcac 135  Q
    |||||| ||| |||||| ||||||  ||||| ||||||||||| ||||||||||||||||| | | || ||||||||||||||||| | |||| ||||||    
T  19311185 atgataggattatgtttccaatttaggttttgtaatcattaaaaacaataatagtgtgtgattgaaaaaaaaggatacacaataaataaaaatgtggcac 19311086  T
Q  136 ta-aattagcctttgattaaataaaataaacggttgagatttggtgtcaac 185  Q
    ||  |||| ||||||||||||||| || ||| |||||||||||||||||||    
T  19311085 tattattaacctttgattaaataagatcaacagttgagatttggtgtcaac 19311035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 19654081 - 19654003
Alignment:
Q  109 gatacacaataaagagaaatatggcacta-aattagcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    ||||||||||||| | |||| ||| | || |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  19654081 gatacacaataaataaaaatgtggtattataattagcctttgattaaataaaataaacggttaagatttggtgtcaacg 19654003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 3623721 - 3623765
Alignment:
Q  142 agcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |||| |||||||||||||||||||||||| |||||||||||||||    
T  3623721 agccattgattaaataaaataaacggttgcgatttggtgtcaacg 3623765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 7449850 - 7449806
Alignment:
Q  146 tttgattaaataaaataaacggttgagatttggtgtcaacggatc 190  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||    
T  7449850 tttgattaaataaaatacacgattgagatttggtgtcaacggatc 7449806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 184
Target Start/End: Complemental strand, 3623245 - 3623210
Alignment:
Q  149 gattaaataaaataaacggttgagatttggtgtcaa 184  Q
    ||||||||||||||||||||||||||||||||||||    
T  3623245 gattaaataaaataaacggttgagatttggtgtcaa 3623210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 21133206 - 21133245
Alignment:
Q  147 ttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  21133206 ttgattaaataaaataaacggttaagatttggtgtcaacg 21133245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 191
Target Start/End: Complemental strand, 12344967 - 12344922
Alignment:
Q  146 tttgattaaataaaataaacggttgagatttggtgtcaacggatct 191  Q
    ||||||||| ||||||| |||||||||||||||| |||||| ||||    
T  12344967 tttgattaactaaaatagacggttgagatttggtatcaacgaatct 12344922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 4940224 - 4940272
Alignment:
Q  142 agcctttgattaaataaaataaacggttgagatttggtgtcaacggatc 190  Q
    |||||||||||  | |||||| ||||||||||| |||||||||||||||    
T  4940224 agcctttgattttaaaaaatagacggttgagatatggtgtcaacggatc 4940272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 43248735 - 43248650
Alignment:
Q  70 aatcattaaatacaataatagtgtgtgatcacaagaaaggatacacaataaagagaaatatggcact-aaattagcctttgattaa 154  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||| |||||||||||    
T  43248735 aatcattgaatacaataatagtgtgtgatcacaagaaaggatacacaataaagataaatatgacactaaaattatcctttgattaa 43248650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 59 - 184
Target Start/End: Original strand, 22212869 - 22212995
Alignment:
Q  59 ttgagttttataatcattaaatacaataatagtgtgtgatcacaagaaaggatacacaataaagagaaatatggcacta-aattagcctttgattaaata 157  Q
    ||||||||| ||||||||||| |||||||| |||||| ||   |||||| ||||||||||||| | |||| ||||| || ||||| ||||||||  ||||    
T  22212869 ttgagttttgtaatcattaaaaacaataatcgtgtgtaattgaaagaaatgatacacaataaataaaaatgtggcattataattaacctttgatctaata 22212968  T
Q  158 aaataaacggttgagatttggtgtcaa 184  Q
    ||||||||||  |||||||||||||||    
T  22212969 aaataaacggccgagatttggtgtcaa 22212995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 63 - 186
Target Start/End: Complemental strand, 19128925 - 19128803
Alignment:
Q  63 gttttataatcattaaatacaataatagtgtgtgatcacaagaaaggatacacaataaagagaaatatggcactaaattagcctttgattaaataaaata 162  Q
    ||||| |||||||| |||||||||||||||||||||   || | ||||||||||||||| | |||||||| |    || | || || |||||||||||||    
T  19128925 gttttttaatcattgaatacaataatagtgtgtgattgaaaaagaggatacacaataaata-aaatatggaaagttatcatccattcattaaataaaata 19128827  T
Q  163 aacggttgagatttggtgtcaacg 186  Q
    ||||||| ||||||||||||||||    
T  19128826 aacggttaagatttggtgtcaacg 19128803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 236207 - 236257
Alignment:
Q  142 agcctttgattaaataaaataaacggttgagatttggtgtcaacggatctt 192  Q
    |||||||||| |||||||||| ||||||||||||||||||||||| |||||    
T  236207 agcctttgataaaataaaatagacggttgagatttggtgtcaacgaatctt 236257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 1896853 - 1896895
Alignment:
Q  142 agcctttgattaaataaaataaacggttgagatttggtgtcaa 184  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  1896853 agcctttgattaaataaaatagacggttgagatttggtgtcaa 1896895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 17071294 - 17071257
Alignment:
Q  149 gattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    ||||||||||||||||||||||||||||||||||||||    
T  17071294 gattaaataaaataaacggttgagatttggtgtcaacg 17071257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 34600331 - 34600294
Alignment:
Q  149 gattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34600331 gattaaataaaataaacggttgagatttggtgtcaacg 34600294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 236363 - 236319
Alignment:
Q  142 agcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |||||||||| |||||||||| |||||||||||||||||||||||    
T  236363 agcctttgataaaataaaatagacggttgagatttggtgtcaacg 236319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 1896277 - 1896233
Alignment:
Q  142 agcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |||||||||| |||||||||| |||||||||||||||||||||||    
T  1896277 agcctttgatcaaataaaatagacggttgagatttggtgtcaacg 1896233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 17071768 - 17071812
Alignment:
Q  142 agcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |||| |||||||||||||||||||||||| |||||||||||||||    
T  17071768 agccattgattaaataaaataaacggttgcgatttggtgtcaacg 17071812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 26874425 - 26874473
Alignment:
Q  142 agcctttgattaaataaaataaacggttgagatttggtgtcaacggatc 190  Q
    ||||||||||||||||||||| |||||||||||||| ||||||| ||||    
T  26874425 agcctttgattaaataaaatatacggttgagatttgatgtcaacagatc 26874473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 34600805 - 34600849
Alignment:
Q  142 agcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |||| |||||||||||||||||||||||| |||||||||||||||    
T  34600805 agccattgattaaataaaataaacggttgcgatttggtgtcaacg 34600849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 235665 - 235625
Alignment:
Q  146 tttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  235665 tttgattaaatgaaatagacggttgagatttggtgtcaacg 235625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 29046109 - 29046062
Alignment:
Q  139 attagcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    ||||||||||||||||||| |||  || ||||||||||||||||||||    
T  29046109 attagcctttgattaaatataatgtaccgttgagatttggtgtcaacg 29046062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 33005601 - 33005554
Alignment:
Q  139 attagcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |||| |||||||||||||||||| ||||||| |||||| |||||||||    
T  33005601 attatcctttgattaaataaaatcaacggttaagattttgtgtcaacg 33005554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 9407962 - 9408020
Alignment:
Q  63 gttttataatcattaaatacaataatagtgtgtgatcacaagaaaggatacacaataaa 121  Q
    ||||| |||||||| |||||||||||||||||||||   || | |||||||||||||||    
T  9407962 gttttttaatcattgaatacaataatagtgtgtgattgaaaaagaggatacacaataaa 9408020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 190
Target Start/End: Original strand, 14479723 - 14479769
Alignment:
Q  144 cctttgattaaataaaataaacggttgagatttggtgtcaacggatc 190  Q
    |||||||| |||||||||| |||||| ||||||||||||||| ||||    
T  14479723 cctttgatcaaataaaatagacggttaagatttggtgtcaacagatc 14479769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 43248632 - 43248591
Alignment:
Q  145 ctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |||| ||||||||||||||||| |||||||||||||| ||||    
T  43248632 ctttaattaaataaaataaacgcttgagatttggtgttaacg 43248591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 236907 - 236943
Alignment:
Q  146 tttgattaaataaaataaacggttgagatttggtgtc 182  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  236907 tttgattaaatgaaatagacggttgagatttggtgtc 236943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 33587168 - 33587216
Alignment:
Q  145 ctttgattaaataaaataaacggttgagatttggtgtcaacggatcttg 193  Q
    ||||||| |||||||||| | |||| | |||||||||||||||||||||    
T  33587168 ctttgataaaataaaatagaaggttaaaatttggtgtcaacggatcttg 33587216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 37 - 184
Target Start/End: Original strand, 25929297 - 25929445
Alignment:
Q  37 atgataagatcatgttttcaatttgagttttataatcattaaatacaataatagtgtgtgatcacaagaaaggatacacaataaagagaaatatggcact 136  Q
    |||||| |||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||   || ||| ||||||||||||| | |||  ||| | |    
T  25929297 atgatatgatcatgttttcaatttgggttttgtaatcattaaaaacaataatagtgtgtgattgaaaaaaaagatacacaataaataaaaacgtgggatt 25929396  T
Q  137 a-aattagcctttgattaaataaaataaacggttgagatttggtgtcaa 184  Q
    |  |||| |||||||||||||||||  ||| ||||||||||||||||||    
T  25929397 attattaacctttgattaaataaaaacaacagttgagatttggtgtcaa 25929445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 186
Target Start/End: Original strand, 17725522 - 17725672
Alignment:
Q  37 atgataagatcatgttttcaatttgagttttataatcattaaatacaataatagtgtgtgatcacaagaaaggatacacaataaagagaaatatggcact 136  Q
    |||||| |||| ||||| || |||| ||||| ||||||||||| ||||||||||||||||||   |||||||||||||||||||| | |||  || ||||    
T  17725522 atgatacgatcttgtttccagtttgggttttgtaatcattaaaaacaataatagtgtgtgattgaaagaaaggatacacaataaataaaaacgtgtcact 17725621  T
Q  137 a-aattagcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    | ||||| |||||||| |||||||||||| || |  |||||||||||||||    
T  17725622 ataattaacctttgatcaaataaaataaatggataggatttggtgtcaacg 17725672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 190
Target Start/End: Complemental strand, 42007680 - 42007540
Alignment:
Q  50 gttttcaatttgagttttataatcattaaatacaataatagtgtgtgatcacaagaaaggatacacaataaagagaaatatggcactaa-attagccttt 148  Q
    |||| |||||| |||||| |||||||||||  |||||||| ||||||||   || ||| ||||||||||||| | |||  || |||||  |||| || ||    
T  42007680 gtttccaatttaagttttgtaatcattaaaatcaataataatgtgtgattgaaa-aaatgatacacaataaatacaaacgtgacactactattaaccatt 42007582  T
Q  149 gattaaataaaataaacggttgagatttggtgtcaacggatc 190  Q
    ||||||||||||| ||||||||||||||||||||||| ||||    
T  42007581 gattaaataaaattaacggttgagatttggtgtcaacagatc 42007540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 37 - 190
Target Start/End: Original strand, 28930724 - 28930878
Alignment:
Q  37 atgataagatcatgttttcaatttgagttttataat-cattaaatacaataatagtgtgtgatcacaagaaaggatacacaataaagagaaatatggcac 135  Q
    |||||| |||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||||   ||  |||| ||||||||||| | |||| ||||||    
T  28930724 atgatatgatcatgtttccaatttcagttttgtaattcattaaaaacaataatagtgtgtgattgaaaagaagggtacacaataaataaaaatgtggcac 28930823  T
Q  136 ta-aattagcctttgattaaataaaataaacggttgagatttggtgtcaacggatc 190  Q
    ||   ||| || ||||| ||||  ||| ||||| ||||||||||||||||||||||    
T  28930824 tatttttaacccttgatcaaat-taatcaacggatgagatttggtgtcaacggatc 28930878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 137
Target Start/End: Original strand, 26395260 - 26395359
Alignment:
Q  37 atgataagatcatgttttcaatttgagttttataatcattaaatacaataatagtgtgtgatcacaagaaaggatacacaataaagagaaatatggcact 136  Q
    |||||| |||||||||||||||||| ||    ||||||||||| |||||||||||||||||| | || ||| ||||||||||||| | |||| |||||||    
T  26395260 atgataggatcatgttttcaatttgggtacggtaatcattaaaaacaataatagtgtgtgatta-aaaaaaagatacacaataaataaaaatgtggcact 26395358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 3418351 - 3418441
Alignment:
Q  102 aagaaaggatacacaataaagagaaatatggcactaa-attagcctttgattaaataaaataaacggttgagatttggtgtcaacggatct 191  Q
    |||||| |||||| |||||| |||||| ||||| ||  ||| ||||||||||||||||||| |||||||||  ||||||||||||| ||||    
T  3418351 aagaaatgatacataataaatagaaatgtggcattattattggcctttgattaaataaaatcaacggttgaagtttggtgtcaacgaatct 3418441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 22649105 - 22649153
Alignment:
Q  142 agcctttgattaaataaaataaacggttgagatttggtgtcaacggatc 190  Q
    |||||||||| |||||||||| ||||| |||||||||||||||||||||    
T  22649105 agcctttgatcaaataaaatagacggtcgagatttggtgtcaacggatc 22649153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 39205551 - 39205506
Alignment:
Q  144 cctttgattaaataaaataaacggttgagatttggtgtcaacggat 189  Q
    ||||||||||||||||||| | |||||||||||| |||||||||||    
T  39205551 cctttgattaaataaaatagatggttgagatttgatgtcaacggat 39205506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 32979121 - 32979077
Alignment:
Q  146 tttgattaaataaaataaacggttgagatttggtgtcaacggatc 190  Q
    |||||| |||||||||| |||||| ||||||||||||||||||||    
T  32979121 tttgatcaaataaaatagacggttaagatttggtgtcaacggatc 32979077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 26395510 - 26395561
Alignment:
Q  139 attagcctttgattaaataaaataaacggttgagatttggtgtcaacggatc 190  Q
    |||| |||||||||||||||||| || |||||| ||||| ||||||||||||    
T  26395510 attaacctttgattaaataaaatcaatggttgacatttgatgtcaacggatc 26395561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 31641592 - 31641545
Alignment:
Q  139 attagcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    ||||||||||||||||| | ||| ||||||| ||||||||||||||||    
T  31641592 attagcctttgattaaaaacaatcaacggttaagatttggtgtcaacg 31641545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 45433 - 45400
Alignment:
Q  164 acggttgagatttggtgtcaacggatcttgtctc 197  Q
    ||||||||||||||||||||||||||| ||||||    
T  45433 acggttgagatttggtgtcaacggatcctgtctc 45400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 31602087 - 31602050
Alignment:
Q  149 gattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    ||||||||||| || |||||||||||||||||||||||    
T  31602087 gattaaataaattagacggttgagatttggtgtcaacg 31602050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 26654356 - 26654396
Alignment:
Q  146 tttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |||||| |||||||||| |||||| ||||||||||||||||    
T  26654356 tttgatcaaataaaatagacggttaagatttggtgtcaacg 26654396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 31603000 - 31603048
Alignment:
Q  139 attagcctttgattaaataaaataaacggttgagatttggtgtcaacgg 187  Q
    ||||| |||||||||||  ||||  ||||||||||||||||||||||||    
T  31603000 attagtctttgattaaagtaaattgacggttgagatttggtgtcaacgg 31603048  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 37733574 - 37733618
Alignment:
Q  142 agcctttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    |||||||||||||||| |||  || ||||||||||||||||||||    
T  37733574 agcctttgattaaatataatgtaccgttgagatttggtgtcaacg 37733618  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 38575632 - 38575588
Alignment:
Q  146 tttgattaaataaaataaacggttgagatttggtgtcaacggatc 190  Q
    |||||||||| |||||  | |||||||||||||||||||||||||    
T  38575632 tttgattaaaaaaaattgatggttgagatttggtgtcaacggatc 38575588  T

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Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 38576280 - 38576320
Alignment:
Q  146 tttgattaaataaaataaacggttgagatttggtgtcaacg 186  Q
    ||||||||||||||||  | |||||||||||||||||||||    
T  38576280 tttgattaaataaaattgatggttgagatttggtgtcaacg 38576320  T

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Target: scaffold0085 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 15957 - 15913
Alignment:
Q  146 tttgattaaataaaataaacggttgagatttggtgtcaacggatc 190  Q
    ||||||||||| ||||  | |||||||||||||||||||||||||    
T  15957 tttgattaaatgaaatgtatggttgagatttggtgtcaacggatc 15913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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