View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4518_high_5 (Length: 378)
Name: NF4518_high_5
Description: NF4518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4518_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 16 - 362
Target Start/End: Original strand, 10968852 - 10969198
Alignment:
| Q |
16 |
gatgaacctaattcatattttattacagattcgtccgtgacttgtgttggagaacaaaggttcaattaattcctgtccattgtgatagctccaacaactt |
115 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10968852 |
gatgaacctaattcatattttactacagattcgttcgtgacttgtgttggagaacaaaggttcaattaattcctgtccattgtgatagctccaacaactt |
10968951 |
T |
|
| Q |
116 |
caaaataacaagagaagcacttgaagtagcatacaacaaagcacaagaaaacaacatcaatgtaaaagggttgatcataacaaacccctccaacccatta |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10968952 |
caaaataacaagagaagcacttgaagtagcatacaaaaaagcacaagaaaacaacatcaatgtaaaagggttgatcataacaaacccctccaacccatta |
10969051 |
T |
|
| Q |
216 |
ggaacaaccttagacaaagagacactaaagagtcttataaccttcatcaatgagaaaacaatccatttagtttgtgatgaaatctatgcagccactgttt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10969052 |
ggaacaaccttagacaaagagacactaaagagtcttataaccttcatcaatgagaaaacaatccatttagtttgtgatgaaatctatgcagccactgttt |
10969151 |
T |
|
| Q |
316 |
ttacctcaccaagctatgtaagtgttagtgaagtcatacaagaaatg |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10969152 |
ttacctcaccaagctatgtaagtgttagtgaagtcgtacaagaaatg |
10969198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 362
Target Start/End: Complemental strand, 7755896 - 7755807
Alignment:
| Q |
273 |
acaatccatttagtttgtgatgaaatctatgcagccactgtttttacctcaccaagctatgtaagtgttagtgaagtcatacaagaaatg |
362 |
Q |
| |
|
||||||||||| ||||||||| ||| |||| ||| | ||||| ||||| |||| ||||| |||||||||||||||||||| ||||||| |
|
|
| T |
7755896 |
acaatccatttcgtttgtgatagaatttatgttgccgcagttttcacctctccaacctatgcaagtgttagtgaagtcatactagaaatg |
7755807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 39 - 247
Target Start/End: Complemental strand, 29964337 - 29964129
Alignment:
| Q |
39 |
tacagattcgtccgtgacttgtgttggagaacaaaggttcaattaattcctgtccattgtgatagctccaacaacttcaaaataacaagagaagcacttg |
138 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| || ||| ||||||||||||| ||| ||||||| ||||| ||||| ||||||||||||||||||| |
|
|
| T |
29964337 |
tacagatttgtccgtgacttatgttggagaaccggtgtgcaactaattcctgtccaatgtcatagctcaaacaatttcaagataacaagagaagcacttg |
29964238 |
T |
|
| Q |
139 |
aagtagcatacaacaaagcacaagaaaacaacatcaatgtaaaagggttgatcataacaaacccctccaacccattaggaacaaccttagacaaagagac |
238 |
Q |
| |
|
||| ||| | || |||||||||||| | |||||||||||||||||||| ||||||||||| || || || || ||||||||||| ||||| ||||| || |
|
|
| T |
29964237 |
aagaagctcataaaaaagcacaagaagaaaacatcaatgtaaaagggttaatcataacaaatccatcaaatcctttaggaacaacattagaaaaagatac |
29964138 |
T |
|
| Q |
239 |
actaaagag |
247 |
Q |
| |
|
||||||||| |
|
|
| T |
29964137 |
actaaagag |
29964129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University