View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4518_high_7 (Length: 358)

Name: NF4518_high_7
Description: NF4518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4518_high_7
NF4518_high_7
[»] chr7 (24 HSPs)
chr7 (26-347)||(6028488-6028823)
chr7 (118-218)||(7438712-7438812)
chr7 (117-259)||(24339607-24339749)
chr7 (165-262)||(598170-598267)
chr7 (191-256)||(26733272-26733337)
chr7 (177-257)||(14077446-14077526)
chr7 (177-257)||(14387474-14387554)
chr7 (166-249)||(5235961-5236044)
chr7 (177-260)||(43249957-43250040)
chr7 (125-248)||(48246773-48246896)
chr7 (178-259)||(7328704-7328785)
chr7 (165-262)||(11061076-11061173)
chr7 (118-215)||(27229264-27229360)
chr7 (166-259)||(27945006-27945099)
chr7 (117-218)||(2334254-2334356)
chr7 (144-216)||(11665419-11665491)
chr7 (206-262)||(26329423-26329479)
chr7 (178-217)||(38143230-38143269)
chr7 (178-260)||(1433418-1433500)
chr7 (228-262)||(9778470-9778504)
chr7 (166-244)||(15680789-15680867)
chr7 (166-242)||(1401007-1401083)
chr7 (182-262)||(1885535-1885615)
chr7 (178-238)||(42720903-42720963)
[»] chr6 (29 HSPs)
chr6 (117-259)||(8365471-8365613)
chr6 (111-262)||(16766659-16766810)
chr6 (166-262)||(426515-426611)
chr6 (166-262)||(7938078-7938174)
chr6 (94-246)||(17435177-17435329)
chr6 (149-264)||(9107354-9107469)
chr6 (95-248)||(3398595-3398741)
chr6 (180-262)||(4118348-4118430)
chr6 (178-262)||(5732523-5732607)
chr6 (143-238)||(5970086-5970181)
chr6 (178-248)||(13851712-13851782)
chr6 (166-260)||(34595098-34595192)
chr6 (180-249)||(12696299-12696368)
chr6 (182-262)||(6389705-6389785)
chr6 (178-262)||(7625084-7625168)
chr6 (166-262)||(7977831-7977927)
chr6 (179-255)||(8805586-8805662)
chr6 (180-244)||(17841604-17841668)
chr6 (178-253)||(7086766-7086841)
chr6 (103-261)||(5000564-5000722)
chr6 (180-262)||(8776988-8777070)
chr6 (182-260)||(13211298-13211376)
chr6 (178-244)||(15443675-15443741)
chr6 (177-247)||(17341676-17341746)
chr6 (178-251)||(9658852-9658925)
chr6 (169-246)||(25038075-25038152)
chr6 (206-262)||(9027140-9027196)
chr6 (158-246)||(19044442-19044530)
chr6 (223-259)||(33303624-33303660)
[»] scaffold0003 (1 HSPs)
scaffold0003 (117-260)||(241558-241701)
[»] chr4 (17 HSPs)
chr4 (103-262)||(44081516-44081674)
chr4 (119-256)||(30838178-30838315)
chr4 (180-262)||(27706192-27706274)
chr4 (180-262)||(20633447-20633526)
chr4 (94-261)||(19482631-19482798)
chr4 (166-262)||(23292987-23293083)
chr4 (178-262)||(24343469-24343553)
chr4 (186-257)||(20521870-20521941)
chr4 (178-257)||(19230322-19230401)
chr4 (228-262)||(4157120-4157154)
chr4 (166-260)||(21945467-21945561)
chr4 (144-241)||(4383351-4383447)
chr4 (166-259)||(12895275-12895368)
chr4 (178-251)||(22440613-22440686)
chr4 (91-152)||(29205529-29205590)
chr4 (150-186)||(5978389-5978425)
chr4 (191-259)||(11651160-11651228)
[»] chr1 (20 HSPs)
chr1 (117-244)||(18556408-18556535)
chr1 (181-262)||(15323125-15323206)
chr1 (178-258)||(398778-398858)
chr1 (166-262)||(6612172-6612268)
chr1 (175-262)||(23531788-23531875)
chr1 (117-261)||(40917714-40917856)
chr1 (180-249)||(48450602-48450671)
chr1 (180-259)||(5927355-5927434)
chr1 (117-262)||(1486667-1486806)
chr1 (109-259)||(31694654-31694804)
chr1 (166-244)||(38078662-38078740)
chr1 (189-262)||(9103602-9103675)
chr1 (165-261)||(16927185-16927281)
chr1 (203-259)||(48040500-48040556)
chr1 (117-216)||(32461416-32461514)
chr1 (178-216)||(16164328-16164366)
chr1 (178-244)||(32724111-32724177)
chr1 (166-244)||(46348384-46348462)
chr1 (92-262)||(5944243-5944415)
chr1 (166-262)||(41877471-41877567)
[»] chr5 (22 HSPs)
chr5 (117-262)||(21522712-21522857)
chr5 (117-262)||(21533278-21533423)
chr5 (118-256)||(36642716-36642853)
chr5 (177-259)||(22013379-22013461)
chr5 (117-262)||(21541992-21542137)
chr5 (166-262)||(13287400-13287496)
chr5 (144-240)||(30098310-30098406)
chr5 (166-262)||(21191057-21191153)
chr5 (180-262)||(6326312-6326394)
chr5 (166-240)||(8420011-8420085)
chr5 (191-261)||(19552569-19552639)
chr5 (180-244)||(14674249-14674313)
chr5 (145-261)||(19579664-19579780)
chr5 (203-262)||(15382439-15382498)
chr5 (166-216)||(40131629-40131679)
chr5 (166-258)||(6247588-6247680)
chr5 (189-241)||(12641657-12641709)
chr5 (234-262)||(27932173-27932201)
chr5 (178-262)||(35016999-35017083)
chr5 (117-241)||(39698524-39698648)
chr5 (182-262)||(42469183-42469263)
chr5 (180-244)||(43001780-43001844)
[»] chr8 (23 HSPs)
chr8 (145-262)||(22651938-22652055)
chr8 (166-249)||(20873044-20873127)
chr8 (144-262)||(2572035-2572153)
chr8 (117-241)||(15816081-15816205)
chr8 (166-260)||(18170483-18170577)
chr8 (166-260)||(18634051-18634145)
chr8 (177-262)||(44067478-44067563)
chr8 (165-249)||(4298886-4298970)
chr8 (117-264)||(29510256-29510403)
chr8 (228-262)||(18964133-18964167)
chr8 (109-249)||(8343291-8343431)
chr8 (229-262)||(24413624-24413657)
chr8 (178-255)||(36934639-36934716)
chr8 (167-251)||(3677759-3677843)
chr8 (227-261)||(926850-926884)
chr8 (189-243)||(12936515-12936569)
chr8 (180-262)||(22197757-22197839)
chr8 (182-264)||(26915257-26915338)
chr8 (165-259)||(31556962-31557055)
chr8 (167-229)||(44505135-44505197)
chr8 (178-262)||(29357938-29358023)
chr8 (203-259)||(28642373-28642429)
chr8 (191-259)||(41838149-41838217)
[»] chr2 (17 HSPs)
chr2 (117-246)||(36756296-36756425)
chr2 (179-262)||(28412312-28412395)
chr2 (166-259)||(20539675-20539768)
chr2 (166-260)||(23921217-23921311)
chr2 (171-248)||(15349816-15349893)
chr2 (180-249)||(30404865-30404934)
chr2 (166-262)||(15972835-15972931)
chr2 (92-216)||(26769519-26769643)
chr2 (166-251)||(30335390-30335475)
chr2 (171-247)||(1374611-1374687)
chr2 (166-246)||(18421941-18422021)
chr2 (117-245)||(30717482-30717610)
chr2 (109-216)||(11223808-11223914)
chr2 (228-262)||(34785045-34785079)
chr2 (166-244)||(37558957-37559035)
chr2 (175-251)||(12940945-12941021)
chr2 (178-262)||(21616724-21616808)
[»] scaffold0027 (1 HSPs)
scaffold0027 (166-262)||(46644-46740)
[»] chr3 (21 HSPs)
chr3 (117-251)||(14216865-14216999)
chr3 (117-251)||(14222994-14223128)
chr3 (166-260)||(28917965-28918059)
chr3 (177-262)||(24205053-24205138)
chr3 (166-262)||(15796295-15796391)
chr3 (117-260)||(41961602-41961745)
chr3 (191-262)||(3164051-3164122)
chr3 (180-246)||(10268501-10268567)
chr3 (178-260)||(39001996-39002078)
chr3 (166-259)||(55401040-55401133)
chr3 (191-262)||(750644-750716)
chr3 (166-262)||(8383219-8383315)
chr3 (166-261)||(10335287-10335382)
chr3 (177-244)||(25948899-25948966)
chr3 (166-249)||(26492206-26492289)
chr3 (166-259)||(8587022-8587115)
chr3 (143-256)||(16788980-16789093)
chr3 (180-260)||(3610597-3610677)
chr3 (228-260)||(13414441-13414473)
chr3 (166-262)||(16000017-16000113)
chr3 (163-259)||(32429378-32429474)
[»] scaffold0007 (1 HSPs)
scaffold0007 (177-262)||(225280-225365)
[»] scaffold0053 (1 HSPs)
scaffold0053 (166-262)||(8760-8856)
[»] scaffold0136 (1 HSPs)
scaffold0136 (117-262)||(3801-3951)
[»] scaffold0168 (1 HSPs)
scaffold0168 (193-261)||(21006-21074)
[»] scaffold0126 (1 HSPs)
scaffold0126 (166-262)||(19107-19202)
[»] scaffold0227 (1 HSPs)
scaffold0227 (227-262)||(15017-15052)
[»] scaffold0223 (1 HSPs)
scaffold0223 (180-259)||(20137-20216)
[»] scaffold0021 (1 HSPs)
scaffold0021 (180-262)||(130444-130526)
[»] scaffold0050 (1 HSPs)
scaffold0050 (166-243)||(70259-70336)
[»] scaffold0008 (1 HSPs)
scaffold0008 (117-262)||(263324-263469)
[»] scaffold0475 (1 HSPs)
scaffold0475 (223-262)||(3278-3317)
[»] scaffold0122 (1 HSPs)
scaffold0122 (223-262)||(8628-8667)
[»] scaffold0652 (1 HSPs)
scaffold0652 (166-262)||(463-559)
[»] scaffold0103 (1 HSPs)
scaffold0103 (180-244)||(51791-51855)
[»] scaffold0018 (1 HSPs)
scaffold0018 (191-251)||(192275-192335)


Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 26 - 347
Target Start/End: Complemental strand, 6028823 - 6028488
Alignment:
Q  26 gttataatcaattgaaccaaacttgttgacattatcctaatcatcatcatgtatatatacagttatatctatgaattacgaatactcttcagattaggcg 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6028823 gttataatcaattgaaccaaacttgttgacattatcctaatcatcatcatgtatatatacagttatatctatgaattacgaatactcttcagattaggcg 6028724  T
Q  126 tgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcg 225  Q
    ||||||||||||||||| |||||||||||||||||| || |||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  6028723 tgtctcagtgtcgaactcgtgtcgtgttcgacactgacacgacaccgacatttgtaattacattaaattatgttatattttcaaattattaaccatatcg 6028624  T
Q  226 acgtgtcagtgtccgtgtcgtgtctggtgtccgtg--------------tcagcattatataaaatttatttatttaatatcataaaaagagcaaaaaag 311  Q
    | ||||||||||| |||||||||||| ||||||||              ||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  6028623 atgtgtcagtgtctgtgtcgtgtctgatgtccgtgtccgtattagtacttcagcgttatatagaatttatttatttaatatcataaaaagagcaaaaaag 6028524  T
Q  312 acaaatcgtcaattacaaagattagtgttggttcat 347  Q
    ||||||||||||||||||||||||||||||||||||    
T  6028523 acaaatcgtcaattacaaagattagtgttggttcat 6028488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 118 - 218
Target Start/End: Complemental strand, 7438812 - 7438712
Alignment:
Q  118 attaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattattaa 217  Q
    ||||||||||||  ||||||| || ||||||||||| ||||| | ||||||||||| | || |||||||||| |||||||| || |||||||||||||||    
T  7438812 attaggcgtgtcctagtgtcgcacatgtgtcgtgtttgacaccgacatgacaccgacacttgtaattacattgaattatgtgattttttcaaattattaa 7438713  T
Q  218 c 218  Q
    |    
T  7438712 c 7438712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 259
Target Start/End: Complemental strand, 24339749 - 24339607
Alignment:
Q  117 gattaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattatta 216  Q
    ||||||||||||| | |||||| |   ||||||||| |||||| | || |||||||| | || |||||||| | |||||||| || ||||||||||||||    
T  24339749 gattaggcgtgtcccggtgtcggatacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaattatta 24339650  T
Q  217 accatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgt 259  Q
     |  | ||| ||||||| ||||| ||||||||| |||||||||    
T  24339649 gctgtgtcggcgtgtcaatgtccatgtcgtgtccggtgtccgt 24339607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 262
Target Start/End: Complemental strand, 598267 - 598170
Alignment:
Q  165 tgacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    ||||||||| | ||| ||||||||| ||||| || || || | ||||||||| |  | |||| ||||||||||||||||| |||||||||||||||||    
T  598267 tgacaccgacacttacaattacatttaattacgtgattttcttaaattattagcggtgtcgatgtgtcagtgtccgtgtcatgtctggtgtccgtgtc 598170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 26733337 - 26733272
Alignment:
Q  191 aattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtc 256  Q
    |||||||| || || ||||||||||| |  | ||||||||||||||||||||||||||||||||||    
T  26733337 aattatgtgattttgtcaaattattagcggtgtcgacgtgtcagtgtccgtgtcgtgtctggtgtc 26733272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 14077446 - 14077526
Alignment:
Q  177 ttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtcc 257  Q
    ||||||||| ||||||||||||||| ||||||||| ||||    | ||||||||| |||||||||||||||| || |||||    
T  14077446 ttataattatattaaattatgttattttttcaaataattaggggtatcgacgtgtaagtgtccgtgtcgtgtttgatgtcc 14077526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 14387474 - 14387554
Alignment:
Q  177 ttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtcc 257  Q
    ||||||||| ||||||||||||||| ||||||||| ||||    | ||||||||| |||||||||||||||| || |||||    
T  14387474 ttataattatattaaattatgttattttttcaaataattaggggtatcgacgtgtaagtgtccgtgtcgtgtttgatgtcc 14387554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 249
Target Start/End: Complemental strand, 5236044 - 5235961
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtc 249  Q
    ||||||||||| |||||||||| |||||||| | || || | ||||||||| |  | |||||||||||||||| ||||||||||    
T  5236044 gacaccgatatatataattacactaaattatataattttcttaaattattagcggtgtcgacgtgtcagtgtctgtgtcgtgtc 5235961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 43250040 - 43249957
Alignment:
Q  177 ttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtg 260  Q
    ||||||||||| |  ||||||| || || ||||||||||| || | ||| |||||||||||||||||| |||| ||||||||||    
T  43250040 ttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcttgtccggtgtccgtg 43249957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 248
Target Start/End: Original strand, 48246773 - 48246896
Alignment:
Q  125 gtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttc 224  Q
    ||||| || ||||| || |||||||||| ||||| || |||||||||| | | |||||||||||| | || ||| || || |||||||| ||||  | ||    
T  48246773 gtgtcccaatgtcggacatgtgtcgtgtccgacattgacatgacaccggtttatataattacattgagttgtgtgattttctcaaattaataacagtgtc 48246872  T
Q  225 gacgtgtcagtgtccgtgtcgtgt 248  Q
    ||||||||| |||| |||||||||    
T  48246873 gacgtgtcattgtctgtgtcgtgt 48246896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 259
Target Start/End: Original strand, 7328704 - 7328785
Alignment:
Q  178 tataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgt 259  Q
    |||||||||| ||||||||||||| || ||||||||||| |  | ||||||||| | |||| |||||||||  |||||||||    
T  7328704 tataattacactaaattatgttattttctcaaattattagcagtatcgacgtgttaatgtctgtgtcgtgttcggtgtccgt 7328785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 262
Target Start/End: Original strand, 11061076 - 11061173
Alignment:
Q  165 tgacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    ||||||||| | || |||||| | |||||||||| || |||||||||||||| |  | |||  ||||||||||||||||||| || | ||||||||||    
T  11061076 tgacaccgacacttgtaattatactaaattatgtgattttttcaaattattagctgtgtcggtgtgtcagtgtccgtgtcgtatccgatgtccgtgtc 11061173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 215
Target Start/End: Original strand, 27229264 - 27229360
Alignment:
Q  118 attaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattatt 215  Q
    ||||||||||||  ||||||||||  || ||||||  |||| || || |||||||||| ||||||||||| |||||||||| || ||| |||||||||    
T  27229264 attaggcgtgtcctagtgtcgaacacgtatcgtgtctgacagtgacacgacaccgatacttataattacactaaattatgtgat-tttacaaattatt 27229360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 259
Target Start/End: Complemental strand, 27945099 - 27945006
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgt 259  Q
    |||||||| | || |||||||| | |||||||| || || |||||||||||    | ||| ||||||||||||||||||||||| |||||||||    
T  27945099 gacaccgacacttgtaattacactgaattatgtaattttctcaaattattagtggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 27945006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 218
Target Start/End: Complemental strand, 2334356 - 2334254
Alignment:
Q  117 gattaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatatttt--caaattat 214  Q
    |||||| ||||| ||||||||| || |||||||||| |||||| | || |||||||| | || |||||||| |||||||||| || ||||  ||||||||    
T  2334356 gattagacgtgtttcagtgtcggacatgtgtcgtgtccgacac-gacacgacaccgacacttgtaattacactaaattatgtgattttttttcaaattat 2334258  T
Q  215 taac 218  Q
    ||||    
T  2334257 taac 2334254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 11665419 - 11665491
Alignment:
Q  144 gtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattatta 216  Q
    |||||||||||||||| | ||||||| ||| | ||||||||| | | |||||||| || ||||||||||||||    
T  11665419 gtgtcgtgttcgacaccgacatgacatcgacacttataattagactgaattatgtgattttttcaaattatta 11665491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 26329423 - 26329479
Alignment:
Q  206 tcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    ||||||||||||| || ||| |||||||||||| ||||||||||  |||||||||||    
T  26329423 tcaaattattaacgatgtcggcgtgtcagtgtctgtgtcgtgtccagtgtccgtgtc 26329479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 217
Target Start/End: Complemental strand, 38143269 - 38143230
Alignment:
Q  178 tataattacattaaattatgttatattttcaaattattaa 217  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  38143269 tataattacattaaattatgtgattttttcaaattattaa 38143230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 1433500 - 1433418
Alignment:
Q  178 tataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtg 260  Q
    ||||||||||  |||| |||| || || |||||||||||||  | ||| ||||||| ||||||||||||||  ||||||||||    
T  1433500 tataattacaccaaatgatgtgattttctcaaattattaacggtgtcggcgtgtcaatgtccgtgtcgtgttcggtgtccgtg 1433418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 262
Target Start/End: Complemental strand, 9778504 - 9778470
Alignment:
Q  228 gtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||||||||||||||||| ||||||||||||    
T  9778504 gtgtcagtgtccgtgtcgtgtccggtgtccgtgtc 9778470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 244
Target Start/End: Complemental strand, 15680867 - 15680789
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtc 244  Q
    |||||||| | ||||||||||| |||||||||| || ||||  |||||||| | || ||| ||||||||||||| ||||    
T  15680867 gacaccgacacttataattacactaaattatgtgattttttttaattattagctatgtcggcgtgtcagtgtccatgtc 15680789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 1401083 - 1401007
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtg 242  Q
    |||||||||| ||||||||||| | |||||||| |  || ||||||||||| | || ||  ||||||||||||||||    
T  1401083 gacaccgatacttataattacactgaattatgtgagtttctcaaattattagcgatatcagcgtgtcagtgtccgtg 1401007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 1885615 - 1885535
Alignment:
Q  182 attacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||| |||||||| || |||||||| | ||| || | |||| ||||| || || |||||||||| ||||||||||||    
T  1885615 attacattgaattatgtcattttttcaaaattttatccgtgtcgatgtgtccgtatcagtgtcgtgtccggtgtccgtgtc 1885535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 42720903 - 42720963
Alignment:
Q  178 tataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtc 238  Q
    |||||||||||| |||||||| || |||||||||||||| |  | || |||||||||||||    
T  42720903 tataattacatttaattatgtgattttttcaaattattagcggtgtcaacgtgtcagtgtc 42720963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 117 - 259
Target Start/End: Original strand, 8365471 - 8365613
Alignment:
Q  117 gattaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattatta 216  Q
    ||||||||||||| |||||||| ||  ||||||||| ||| || | || |||||||| | || ||||||||   |||||||| |||||||||||||||||    
T  8365471 gattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacacgacaccgacacttgtaattacaccgaattatgtgatattttcaaattatta 8365570  T
Q  217 accatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgt 259  Q
        | ||| |||||||||||||||||||||||||||||||||    
T  8365571 gttgtgtcggcgtgtcagtgtccgtgtcgtgtctggtgtccgt 8365613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 111 - 262
Target Start/End: Complemental strand, 16766810 - 16766659
Alignment:
Q  111 tcttcagattaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaa 210  Q
    ||||| ||||||||||||| | |||||| ||  |||| |||| |||||| | || |||||||| | || |||||||| | |||||||| || ||||||||    
T  16766810 tcttcggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaa 16766711  T
Q  211 ttattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||| |  | ||| ||||||||||||| ||||||||| ||||||||||||    
T  16766710 ttattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgtgtc 16766659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 166 - 262
Target Start/End: Original strand, 426515 - 426611
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||| | || |||||||||| |||||||| || ||||||||||||||||  | ||| ||||||||||||||||||||||| ||| ||||||||    
T  426515 gacaccgacacttgtaattacatttaattatgtgattttttcaaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgtccggtatccgtgtc 426611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 262
Target Start/End: Complemental strand, 7938174 - 7938078
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||| | ||||||||||| |||||||| | || |||||||||||||| |  | ||| ||||||||||||| ||||||||| ||||||||||||    
T  7938174 gacaccgacacttataattacactaaattatatgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgtgtc 7938078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 246
Target Start/End: Complemental strand, 17435329 - 17435177
Alignment:
Q  94 ctatgaattacgaatactcttcagattaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaat 193  Q
    ||||||| |||| | ||| |||||||||| |||||| |||||||||||  ||||||||| |||||  | ||  ||||  | | || |||||||| | |||    
T  17435329 ctatgaagtacggacacttttcagattagacgtgtcccagtgtcgaacacgtgtcgtgtccgacatcgacaaaacactaacacttgtaattacactgaat 17435230  T
Q  194 tatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgt 246  Q
    ||||| || |||| ||||||||| | || ||||||| ||||||||||||||||    
T  17435229 tatgtaattttttaaaattattagctatgtcgacgtatcagtgtccgtgtcgt 17435177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 264
Target Start/End: Original strand, 9107354 - 9107469
Alignment:
Q  149 gtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgt 248  Q
    |||| |||||| | || |||||||| | || |||||||| | |||| ||| || |||||||||||||| |  | ||| ||||| ||||||||||||||||    
T  9107354 gtgtccgacaccgacacgacaccgacacttgtaattacactgaattttgtgattttttcaaattattagctgtgtcggcgtgttagtgtccgtgtcgtgt 9107453  T
Q  249 ctggtgtccgtgtcag 264  Q
    | ||||||||||||||    
T  9107454 ccggtgtccgtgtcag 9107469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 95 - 248
Target Start/End: Complemental strand, 3398741 - 3398595
Alignment:
Q  95 tatgaattacgaatactcttcagattaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaatt 194  Q
    ||||||||||||| |||| || |||||| |||||  | |||||| || |||||||||| | ||||      |||||||||| ||||||||||| | ||||    
T  3398741 tatgaattacgaacactcctctgattagacgtgttccggtgtcggacatgtgtcgtgtccaacac------gacaccgatacttataattacactgaatt 3398648  T
Q  195 atgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgt 248  Q
    || | || |||||||||||||| |  | ||| ||||||||||||||||||||||    
T  3398647 atatgat-ttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgt 3398595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 262
Target Start/End: Original strand, 4118348 - 4118430
Alignment:
Q  180 taattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||||| |||||||| || |||||||||||||||| || ||| ||||| | | | ||||||||||| ||||||||||||    
T  4118348 taattacatttaattatgtgattttttcaaattattaactatatcgtcgtgttaatatacgtgtcgtgtccggtgtccgtgtc 4118430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 178 - 262
Target Start/End: Original strand, 5732523 - 5732607
Alignment:
Q  178 tataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||||| |||| ||||| || || |||||||||||||  | ||| ||||||||||||| |||||||||  |||||||||||    
T  5732523 tataattacactaaaatatgtgattttctcaaattattaacggtgtcggcgtgtcagtgtccatgtcgtgtccagtgtccgtgtc 5732607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 5970086 - 5970181
Alignment:
Q  143 tgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtc 238  Q
    |||||||||| |||||| | || |||||| | |||| |||||||| | |||||||| || ||||||||||||||||  | |||||||||| |||||    
T  5970086 tgtgtcgtgtccgacaccgacacgacacccacatttgtaattacactgaattatgtgattttttcaaattattaactgtgtcgacgtgtccgtgtc 5970181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 13851782 - 13851712
Alignment:
Q  178 tataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgt 248  Q
    |||||||||| | ||||| ||||| || ||||||||||| |  | ||||||||||||||||||||||||||    
T  13851782 tataattacactgaattacgttattttctcaaattattagcggtgtcgacgtgtcagtgtccgtgtcgtgt 13851712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 260
Target Start/End: Complemental strand, 34595192 - 34595098
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtg 260  Q
    |||||||| | || |||||||| | |||||||| || ||||||||||||||    | ||| ||||||| ||||||||||||||| ||||||||||    
T  34595192 gacaccgacacttgtaattacactgaattatgtgattttttcaaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtg 34595098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 12696368 - 12696299
Alignment:
Q  180 taattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtc 249  Q
    |||||||| | |||||||| || |||||||||||||| |  | ||| |||||||||||||||||||||||    
T  12696368 taattacactgaattatgtaattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtc 12696299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 6389785 - 6389705
Alignment:
Q  182 attacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||| |||||||| | || || ||||||||||| || | ||| ||||| ||||||||||||||||| |||||| |||||    
T  6389785 attacactaaattatatcattttctcaaattattatccgtgtcggcgtgtgagtgtccgtgtcgtgtccggtgtctgtgtc 6389705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 262
Target Start/End: Complemental strand, 7625168 - 7625084
Alignment:
Q  178 tataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||| | |||||||| | || || ||||||||||| || | |||||||||| ||||| |||||||||| | ||||||||||    
T  7625168 tataattatactaaattatatcattttctcaaattattatccgtgtcgacgtgtcggtgtctgtgtcgtgtccgatgtccgtgtc 7625084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 262
Target Start/End: Original strand, 7977831 - 7977927
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||| | || |||||||| | |||||||| || |||||||||||||| |  | ||| ||||||||| ||| |||||||||  |||||||||||    
T  7977831 gacaccgacacttgtaattacactgaattatgtaattttttcaaattattagctgtgtcggcgtgtcagtatccatgtcgtgtccagtgtccgtgtc 7977927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 8805586 - 8805662
Alignment:
Q  179 ataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgt 255  Q
    ||||||||| |||||||||| || || ||||||||||| |  |  ||||||||| ||||| ||||||||||||||||    
T  8805586 ataattacactaaattatgtgattttctcaaattattagcagtgccgacgtgtcggtgtctgtgtcgtgtctggtgt 8805662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 17841604 - 17841668
Alignment:
Q  180 taattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtc 244  Q
    |||||||| |||||||||| || |||||||||||||| |  | ||| ||||||||||||||||||    
T  17841604 taattacactaaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 17841668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 253
Target Start/End: Complemental strand, 7086841 - 7086766
Alignment:
Q  178 tataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggt 253  Q
    |||||||||| |||||||||| || || ||||||||||| |  |  ||||||||| ||||| ||||||||||||||    
T  7086841 tataattacactaaattatgtgattttctcaaattattagcagtgccgacgtgtcggtgtctgtgtcgtgtctggt 7086766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 261
Target Start/End: Original strand, 5000564 - 5000722
Alignment:
Q  103 acgaatactcttcagattaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttata 202  Q
    ||||| ||||||| |||||| ||||||   |||||| |  ||||||||||  ||||| | |||||||| || || || ||||| | | ||| |||| ||     
T  5000564 acgaacactcttcggattagacgtgtcctggtgtcggatatgtgtcgtgtctgacaccgacatgacactgacatataaaattatactgaatcatgtgatt 5000663  T
Q  203 ttttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgt 261  Q
    || || |||||||| |  | ||||||||||||| |||||||| |||| |||||||||||    
T  5000664 ttctcgaattattagcggtgtcgacgtgtcagtatccgtgtcatgtccggtgtccgtgt 5000722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 262
Target Start/End: Original strand, 8776988 - 8777070
Alignment:
Q  180 taattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||| | |||| ||| || ||||||||||||||    | ||| ||||||||||||||||||||||| | ||||||||||    
T  8776988 taattacactgaattttgtgattttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccgttgtccgtgtc 8777070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 260
Target Start/End: Original strand, 13211298 - 13211376
Alignment:
Q  182 attacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtg 260  Q
    |||| |||||||||||| || || ||||||||||| | || |||||||||| |||||| ||| |||||  |||||||||    
T  13211298 attatattaaattatgtcattttctcaaattattatcaatgtcgacgtgtcggtgtccttgtggtgtcccgtgtccgtg 13211376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 244
Target Start/End: Complemental strand, 15443741 - 15443675
Alignment:
Q  178 tataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtc 244  Q
    |||||||| ||| ||||||||||| || |||||||||||   || ||||||||||||||| ||||||    
T  15443741 tataattatattgaattatgttattttctcaaattattattgatgtcgacgtgtcagtgttcgtgtc 15443675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 17341676 - 17341746
Alignment:
Q  177 ttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtg 247  Q
    ||||||||||| | |||||||| || || |||||||||||||  | ||| |||||||||| ||||||||||    
T  17341676 ttataattacactgaattatgtgattttatcaaattattaacggtgtcggcgtgtcagtgcccgtgtcgtg 17341746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 9658925 - 9658852
Alignment:
Q  178 tataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctg 251  Q
    |||||||||| | |||||||| || || | ||||||||| |  | ||| |||||||||||||||||||||||||    
T  9658925 tataattacactgaattatgtgattttcttaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtctg 9658852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 246
Target Start/End: Original strand, 25038075 - 25038152
Alignment:
Q  169 accgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgt 246  Q
    ||||| |||| |||||||| |||||||||| || || |||||||||||||  | || |||||||||| || |||||||    
T  25038075 accgacatttgtaattacactaaattatgtaattttctcaaattattaacggtgtcaacgtgtcagtatctgtgtcgt 25038152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 262
Target Start/End: Complemental strand, 9027196 - 9027140
Alignment:
Q  206 tcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    ||||||||||| |  | ||| ||||||||||||||||||||||| || |||||||||    
T  9027196 tcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggagtccgtgtc 9027140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 246
Target Start/End: Complemental strand, 19044530 - 19044442
Alignment:
Q  158 actgtcatgacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgt 246  Q
    |||| ||||||||||| |  |||||| ||| | |||||||| ||||| |||||||||||  | | ||| ||||||||||||| ||||||    
T  19044530 actgacatgacaccgacacatataataacactgaattatgtgatattctcaaattattagtcgtgtcggcgtgtcagtgtccatgtcgt 19044442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 33303660 - 33303624
Alignment:
Q  223 tcgacgtgtcagtgtccgtgtcgtgtctggtgtccgt 259  Q
    |||| |||||||||||||| |||||||||||||||||    
T  33303660 tcgatgtgtcagtgtccgtatcgtgtctggtgtccgt 33303624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 117 - 260
Target Start/End: Complemental strand, 241701 - 241558
Alignment:
Q  117 gattaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattatta 216  Q
    ||||||||||||| | |||||| ||  ||||||||| ||||||   || |||||||| | | ||||||||| |||||||||| || ||| ||||||||||    
T  241701 gattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccaacacgacaccgacactcataattacactaaattatgtgatttttccaaattatta 241602  T
Q  217 accatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtg 260  Q
     |  | ||| ||||||||||||||||||||||| ||||||||||    
T  241601 gctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtg 241558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 103 - 262
Target Start/End: Original strand, 44081516 - 44081674
Alignment:
Q  103 acgaatactcttcagattaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttata 202  Q
    ||||| |||||||||||||| | ||||||||||||||||  |||||||||| || | || || | ||| || |  ||||||||||||||||||| | ||     
T  44081516 acgaacactcttcagattagacatgtctcagtgtcgaacacgtgtcgtgtttgata-tgacacggcactgacacatataattacattaaattatatgatt 44081614  T
Q  203 ttttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||||||||||| || |||  |||||||||||| ||||||||| | ||| ||||||    
T  44081615 ttttcaaattattaacgatatcggtgtgtcagtgtccttgtcgtgtccgatgttcgtgtc 44081674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 256
Target Start/End: Complemental strand, 30838315 - 30838178
Alignment:
Q  119 ttaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattattaac 218  Q
    ||||||||||||  |||||| ||  |||||| || |||||||| || |||||||||| ||||||||||| |||||||| | || || ||||||||||| |    
T  30838315 ttaggcgtgtcttggtgtcggacacgtgtcgcgtccgacactgacacgacaccgatacttataattacactaaattatataattttatcaaattattagc 30838216  T
Q  219 catttcgacgtgtcagtgtccgtgtcgtgtctggtgtc 256  Q
      | ||||||| |||||||||||| |||||||| ||||    
T  30838215 agtatcgacgtatcagtgtccgtgccgtgtctgttgtc 30838178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 180 - 262
Target Start/End: Original strand, 27706192 - 27706274
Alignment:
Q  180 taattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||| |||||||||| || |||| ||||||||||   | ||||||||||||||||| ||||||||||||||||||||||    
T  27706192 taattacactaaattatgtgatttttttaaattattaattgtgtcgacgtgtcagtgtccctgtcgtgtctggtgtccgtgtc 27706274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 262
Target Start/End: Complemental strand, 20633526 - 20633447
Alignment:
Q  180 taattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||||| |||||||||   |||||||||||||| |  | ||||||||||||||||||| ||||||||||||||||||||    
T  20633526 taattacattgaattatgtt---ttttcaaattattagcggtgtcgacgtgtcagtgtccgtatcgtgtctggtgtccgtgtc 20633447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 261
Target Start/End: Complemental strand, 19482798 - 19482631
Alignment:
Q  94 ctatgaattacgaatactcttcagattaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaat 193  Q
    |||||||  ||||| |||| || ||||||| ||||| |||||||| ||  ||||||||| | | || | || |||||| | | || ||||||||   |||    
T  19482798 ctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgtgtcgtgtccaataccgacacgacaccaacacttgtaattacaccgaat 19482699  T
Q  194 tatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgt 261  Q
    ||||| |||||||||||||||||    | ||| |||||||||||| ||||||||||||||||| ||||    
T  19482698 tatgtgatattttcaaattattagttgtgtcggcgtgtcagtgtctgtgtcgtgtctggtgtctgtgt 19482631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 262
Target Start/End: Original strand, 23292987 - 23293083
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||| | || |||||| | | |||||||| || |||||||||||||| |  | ||| ||||||| ||||||||||||||| ||||||||||||    
T  23292987 gacaccgacacttgtaattatactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtgtc 23293083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 178 - 262
Target Start/End: Complemental strand, 24343553 - 24343469
Alignment:
Q  178 tataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||||| | |||||||| || || ||||||||||| || | ||| |||||| | |||||||||||||| ||||||||||||    
T  24343553 tataattacactgaattatgtaattttctcaaattattatccgtgtcggcgtgtcggcgtccgtgtcgtgtccggtgtccgtgtc 24343469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 257
Target Start/End: Original strand, 20521870 - 20521941
Alignment:
Q  186 cattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtcc 257  Q
    |||| |||||||| || || ||||||||||| |  | ||| |||||||||||||||||||||||||||||||    
T  20521870 cattgaattatgtgattttatcaaattattatcggtatcggcgtgtcagtgtccgtgtcgtgtctggtgtcc 20521941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 257
Target Start/End: Original strand, 19230322 - 19230401
Alignment:
Q  178 tataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtcc 257  Q
    |||||||||||| ||||||||||| || ||||||||||| | || || | ||||||||||  || | |||||||||||||    
T  19230322 tataattacattgaattatgttattttctcaaattattatctatgtccatgtgtcagtgtttgtattgtgtctggtgtcc 19230401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 262
Target Start/End: Complemental strand, 4157154 - 4157120
Alignment:
Q  228 gtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    ||||||||||| |||||||||||||||||||||||    
T  4157154 gtgtcagtgtctgtgtcgtgtctggtgtccgtgtc 4157120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 260
Target Start/End: Complemental strand, 21945561 - 21945467
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtg 260  Q
    |||||||| | || |||||||| | |||||||| || |||||||||||||| |  | ||| | |||||||||| ||||| |||| ||||||||||    
T  21945561 gacaccgacacttgtaattacactgaattatgtcattttttcaaattattagctgtgtcggcatgtcagtgtctgtgtcatgtccggtgtccgtg 21945467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 241
Target Start/End: Complemental strand, 4383447 - 4383351
Alignment:
Q  144 gtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgt 241  Q
    |||||||||| ||||| | || ||||| || |||| |||||||| | |||||||| || ||||||||||||||    | |||||||||||||||||||    
T  4383447 gtgtcgtgtttgacaccgacacgacactgacatttgtaattacactgaattatgtgat-ttttcaaattattagttgtatcgacgtgtcagtgtccgt 4383351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 259
Target Start/End: Original strand, 12895275 - 12895368
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgt 259  Q
    |||||||| | |||||||||||  ||||||||| || ||||||||||||||    | ||| ||||||| ||| |||||||| || |||||||||    
T  12895275 gacaccgacacttataattacacaaaattatgtgattttttcaaattattatttgtgtcggcgtgtcattgttcgtgtcgtatccggtgtccgt 12895368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 22440613 - 22440686
Alignment:
Q  178 tataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctg 251  Q
    |||||||||| | |||||||| || || |||||||||||||  | |||| || ||||||||| |||||||||||    
T  22440613 tataattacactgaattatgtgattttctcaaattattaacggtgtcgatgtatcagtgtccatgtcgtgtctg 22440686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 29205590 - 29205529
Alignment:
Q  91 tatctatgaattacgaatactcttcagattaggcgtgtctcagtgtcgaacttgtgtcgtgt 152  Q
    ||||||||||  ||||| |||| || ||||||||||||| |||||||| || ||||||||||    
T  29205590 tatctatgaagcacgaacactcctcggattaggcgtgtcccagtgtcggacatgtgtcgtgt 29205529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 5978389 - 5978425
Alignment:
Q  150 tgttcgacactgtcatgacaccgatatttataattac 186  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  5978389 tgttcgatactgtcatgacatcgatatttataattac 5978425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 259
Target Start/End: Original strand, 11651160 - 11651228
Alignment:
Q  191 aattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgt 259  Q
    |||||||| || |||| ||||||||| |  | ||||||||||||||||||| ||||||||  |||||||    
T  11651160 aattatgtgatttttttaaattattagctgtgtcgacgtgtcagtgtccgtatcgtgtcttatgtccgt 11651228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 117 - 244
Target Start/End: Original strand, 18556408 - 18556535
Alignment:
Q  117 gattaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattatta 216  Q
    ||||||||||||| |||||||| |   |||||| ||  ||||| |||| |||||| ||| || ||||||||||||||||||| |||||||||||||||||    
T  18556408 gattaggcgtgtcccagtgtcggatacgtgtcgggtctgacaccgtcacgacaccaatacttgtaattacattaaattatgtgatattttcaaattatta 18556507  T
Q  217 accatttcgacgtgtcagtgtccgtgtc 244  Q
     |  | ||| ||||||||||||||||||    
T  18556508 gctgtgtcggcgtgtcagtgtccgtgtc 18556535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 181 - 262
Target Start/End: Complemental strand, 15323206 - 15323125
Alignment:
Q  181 aattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    ||||||| |||||||||| || ||||||||||||||||  | ||||| ||||||||||| ||||||||| ||||||||||||    
T  15323206 aattacactaaattatgtgattttttcaaattattaactgtatcgacatgtcagtgtccatgtcgtgtccggtgtccgtgtc 15323125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 398778 - 398858
Alignment:
Q  178 tataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccg 258  Q
    |||||||||| | |||||||| || |||||||||||||| |  | ||| ||||||||||||||||||||||| ||||||||    
T  398778 tataattacactgaattatgtgattttttcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccg 398858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 262
Target Start/End: Original strand, 6612172 - 6612268
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||| | || |||||||| | |||||||| || ||||||||||||||||  | ||| ||||||| ||||||||||||||| ||||| ||||||    
T  6612172 gacaccgacacttgtaattacactgaattatgtaattttttcaaattattaactgtatcggcgtgtcattgtccgtgtcgtgtccggtgttcgtgtc 6612268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 262
Target Start/End: Original strand, 23531788 - 23531875
Alignment:
Q  175 atttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    ||||||||||||||| |||||||| ||||||||||||||||| |  | | || ||||| |||||||| |||||||  |||||||||||    
T  23531788 atttataattacattgaattatgtgatattttcaaattattagcagtattgaagtgtcggtgtccgtatcgtgtccagtgtccgtgtc 23531875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 261
Target Start/End: Complemental strand, 40917856 - 40917714
Alignment:
Q  117 gattaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattatta 216  Q
    ||||||||||||| | |||||| ||  ||||||||| | |||| | || |||||||| | || |||||||| | |||| ||  || ||||||||||||||    
T  40917856 gattaggcgtgtcccggtgtcggacacgtgtcgtgtccaacaccgacacgacaccgagacttgtaattacacttaattgtg--attttttcaaattatta 40917759  T
Q  217 accatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgt 261  Q
     |  | ||| ||||||||| ||||||||||||| |||||||||||    
T  40917758 gctgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtgt 40917714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 48450602 - 48450671
Alignment:
Q  180 taattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtc 249  Q
    |||||||| ||||||||||||| |||||||||||||| |  | | | |||||||||||||||||||||||    
T  48450602 taattacactaaattatgttattttttcaaattattagctgtgttggcgtgtcagtgtccgtgtcgtgtc 48450671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 5927355 - 5927434
Alignment:
Q  180 taattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgt 259  Q
    ||||||||||||||||| | || |||||||||||||| |  | |   ||||||||||||||||||||||| |||||||||    
T  5927355 taattacattaaattatatgattttttcaaattattagcagtgttagcgtgtcagtgtccgtgtcgtgtccggtgtccgt 5927434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 262
Target Start/End: Original strand, 1486667 - 1486806
Alignment:
Q  117 gattaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattatta 216  Q
    ||||||||||||| | |||||| ||  ||||||||| ||||||      |||||||| | ||||||||||| | |||||||| || ||||||||||||||    
T  1486667 gattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacac------gacaccgacacttataattacactgaattatgtgattttttcaaattatta 1486760  T
Q  217 accatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
     |  | ||  ||||||||| |||||||||| || ||| ||||||||    
T  1486761 gctgtgtcagcgtgtcagtatccgtgtcgtatccggtatccgtgtc 1486806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 259
Target Start/End: Original strand, 31694654 - 31694804
Alignment:
Q  109 actcttcagattaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgt--tatatttt 206  Q
    |||| |||||||||||||||  | ||||||||  ||||| |||| |||||| | || |||||||| | || |||||| | | ||||||||  | | ||||    
T  31694654 actcctcagattaggcgtgttccggtgtcgaatatgtgttgtgtccgacaccgacacgacaccgacacttgtaattatactgaattatgtgatttttttt 31694753  T
Q  207 caaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgt 259  Q
    |||||||||| | || ||||||| ||||||||  ||||||||| |||||||||    
T  31694754 caaattattagctatgtcgacgtatcagtgtc--tgtcgtgtccggtgtccgt 31694804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 38078662 - 38078740
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtc 244  Q
    |||||||| | || |||||||||| |||||||| || |||||||||||||| |  | ||||||||||||||| ||||||    
T  38078662 gacaccgacacttgtaattacattgaattatgtgattttttcaaattattagctgtgtcgacgtgtcagtgttcgtgtc 38078740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 262
Target Start/End: Complemental strand, 9103675 - 9103602
Alignment:
Q  189 taaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||||| || ||||||||||||||||  | ||| |||||||||||||| ||| |||| ||||| ||||||    
T  9103675 taaattatgtgattttttcaaattattaactgtgtcggcgtgtcagtgtccgagtcctgtcaggtgttcgtgtc 9103602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 261
Target Start/End: Original strand, 16927185 - 16927281
Alignment:
Q  165 tgacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgt 261  Q
    ||||||| | || |||||||||| | |||||| | || |||||||||||||| | ||  ||||||||||||||| ||||||||| || |||| ||||    
T  16927185 tgacaccaacatatataattacactgaattatatgattttttcaaattattagctatgccgacgtgtcagtgtctgtgtcgtgtttgatgtctgtgt 16927281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 259
Target Start/End: Original strand, 48040500 - 48040556
Alignment:
Q  203 ttttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgt 259  Q
    |||||||||||||| |  | ||| ||||||||||||||||||||||| |||||||||    
T  48040500 ttttcaaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 48040556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 216
Target Start/End: Original strand, 32461416 - 32461514
Alignment:
Q  117 gattaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattatta 216  Q
    ||||||||||||| |||||||  ||  ||||||||| |||||| | ||  ||||| | | || ||||||||||||||||||| || ||||||||||||||    
T  32461416 gattaggcgtgtcccagtgtcagacacgtgtcgtgtccgacaccgacac-acaccaacacttgtaattacattaaattatgtgattttttcaaattatta 32461514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 16164328 - 16164366
Alignment:
Q  178 tataattacattaaattatgttatattttcaaattatta 216  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  16164328 tataattacattaaattatgtgattttttcaaattatta 16164366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 244
Target Start/End: Original strand, 32724111 - 32724177
Alignment:
Q  178 tataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtc 244  Q
    ||||||||||||||||||||| |  || ||||||||||||| || ||| ||| ||||||| ||||||    
T  32724111 tataattacattaaattatgtaaatttctcaaattattaacgatgtcggcgtatcagtgttcgtgtc 32724177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 46348384 - 46348462
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtc 244  Q
    |||||||| | || |||||||| |||||||| | || |||||||||||||| |  | ||| ||||||||||||||||||    
T  46348384 gacaccgacacttgtaattacactaaattatatgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 46348462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 262
Target Start/End: Complemental strand, 5944415 - 5944243
Alignment:
Q  92 atctatgaattacgaatactcttcagattaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaa 191  Q
    |||||||||  ||||| |||| || |||||||||| || | |||||| || ||||| |||| || ||  | || |||||||| | ||||||||||| | |    
T  5944415 atctatgaagcacgaacactcctcggattaggcgtatcccggtgtcggacatgtgttgtgtccgtcatcgacacgacaccgacacttataattacactga 5944316  T
Q  192 attatgt--tatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||  | | |||||||||||||| |  |  || |||||||||||| |||||||||| | ||||| ||||    
T  5944315 attatgtgattttttttcaaattattagctgtggcggcgtgtcagtgtctgtgtcgtgtccgatgtccttgtc 5944243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 262
Target Start/End: Original strand, 41877471 - 41877567
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||| | || |||||||| |||||||||| || || ||||||||||| |  | ||| |||  ||||||| |||||||||||||| ||| ||||    
T  41877471 gacaccgacacttgtaattacactaaattatgtaattttctcaaattattagcggtgtcggcgtaccagtgtctgtgtcgtgtctggtatccatgtc 41877567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 262
Target Start/End: Complemental strand, 21522857 - 21522712
Alignment:
Q  117 gattaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattatta 216  Q
    ||||||||||||| | ||| || ||  ||||||||| |||||| | || |||||||| | || |||||||| | ||||||||||| |||| |||||||||    
T  21522857 gattaggcgtgtcccggtgccggacacgtgtcgtgtccgacaccgacacgacaccgacaattgtaattacactgaattatgttattttttaaaattatta 21522758  T
Q  217 accatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
     |  | ||| ||||||||||||||||||||||| |||| |||||||    
T  21522757 gctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgaccgtgtc 21522712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 262
Target Start/End: Complemental strand, 21533423 - 21533278
Alignment:
Q  117 gattaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattatta 216  Q
    ||||||||||||| | ||| || ||  ||||||||| |||||| | || |||||||| | || |||||||| | ||||||||||| |||| |||||||||    
T  21533423 gattaggcgtgtcccggtgccggacacgtgtcgtgtccgacaccgacacgacaccgacaattgtaattacactgaattatgttattttttaaaattatta 21533324  T
Q  217 accatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
     |  | ||| ||||||||||||||||||||||| |||| |||||||    
T  21533323 gctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgaccgtgtc 21533278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 118 - 256
Target Start/End: Original strand, 36642716 - 36642853
Alignment:
Q  118 attaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattattaa 217  Q
    |||||||||||| | |||||| ||  ||||||||| ||||||   ||||||||||| | ||||| ||||| |||| ||||| |  |||||||||||||||    
T  36642716 attaggcgtgtccc-gtgtcggacacgtgtcgtgtccgacaccaacatgacaccgacacttatatttacactaaaatatgtcactttttcaaattattaa 36642814  T
Q  218 ccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtc 256  Q
    |  | ||| ||||||||||||||||||||||| ||||||    
T  36642815 ctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtc 36642853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 259
Target Start/End: Complemental strand, 22013461 - 22013379
Alignment:
Q  177 ttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgt 259  Q
    ||||||||||| |||||||||| || ||| |||||||||| |  | ||| ||||||||||||||||||||||| |||||||||    
T  22013461 ttataattacactaaattatgtaatttttccaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 22013379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 117 - 262
Target Start/End: Complemental strand, 21542137 - 21541992
Alignment:
Q  117 gattaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattatta 216  Q
    |||| |||||||| | |||||| ||  ||||||||| |||||| | || |||||||| | || |||||||| | ||||||||||| |||| |||||||||    
T  21542137 gattcggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgttatctttttaaattatta 21542038  T
Q  217 accatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
        | ||| | ||||| |||| |||||||||||||||||||||||    
T  21542037 gttgtgtcggcatgtcaatgtctgtgtcgtgtctggtgtccgtgtc 21541992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 262
Target Start/End: Original strand, 13287400 - 13287496
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||| | || || ||||| | |||||||| || |||||||||||||| |  | ||||||||| ||||||||||||||||| ||||||||||||    
T  13287400 gacaccgacacttgtagttacactgaattatgtgattttttcaaattattatctgtgtcgacgtgttagtgtccgtgtcgtgtccggtgtccgtgtc 13287496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 30098406 - 30098310
Alignment:
Q  144 gtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccg 240  Q
    ||||||||| |||||||| |  || ||||| || |||||||||||| |||||||| || || |||||||||||||  ||||| ||||||||||||||    
T  30098406 gtgtcgtgtccgacactgactcgataccgacatctataattacattgaattatgtgattttctcaaattattaacggtttcgtcgtgtcagtgtccg 30098310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 262
Target Start/End: Original strand, 21191057 - 21191153
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||| | || |||||||| | |||||||| || |||||||||||||| |  | ||| | ||||||||||||||||||||| |||||| |||||    
T  21191057 gacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcatgtcagtgtccgtgtcgtgtccggtgtcagtgtc 21191153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 262
Target Start/End: Original strand, 6326312 - 6326394
Alignment:
Q  180 taattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||| | |||||||| || || |||||||| || | || ||| ||||||||||||||||||||||| ||| ||||||||    
T  6326312 taattacactgaattatgtaattttctcaaattactagcgatgtcggcgtgtcagtgtccgtgtcgtgtccggtatccgtgtc 6326394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 8420085 - 8420011
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccg 240  Q
    |||||||| | || |||||||||| ||||||||||| |||||||||||||| | || ||| ||||||| ||||||    
T  8420085 gacaccgacacttgtaattacattgaattatgttattttttcaaattattagctatgtcggcgtgtcattgtccg 8420011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 261
Target Start/End: Original strand, 19552569 - 19552639
Alignment:
Q  191 aattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgt 261  Q
    |||||||| || ||||||||||||||||  | ||| ||||||||||||||||||||||  |||| ||||||    
T  19552569 aattatgtgattttttcaaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgttcggtggccgtgt 19552639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 14674313 - 14674249
Alignment:
Q  180 taattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtc 244  Q
    |||||||| |||||||||| || |||||||||||||| |  | ||| ||||||||||||||||||    
T  14674313 taattacactaaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 14674249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 261
Target Start/End: Complemental strand, 19579780 - 19579664
Alignment:
Q  145 tgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtc 244  Q
    |||||||| |||||||| || |||||||| | || ||||| || |||||||||| || || ||||||||||| |  | ||| ||| |||||||||||||     
T  19579780 tgtcgtgtccgacactgacacgacaccgacacttgtaattgcactaaattatgtgattttctcaaattattagctgtgtcggcgtatcagtgtccgtgtt 19579681  T
Q  245 gtgtctggtgtccgtgt 261  Q
    || || |||||| ||||    
T  19579680 gtatccggtgtcggtgt 19579664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 15382498 - 15382439
Alignment:
Q  203 ttttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||||||||| |  | ||| ||||||| ||||||||||||||| ||||||||||||    
T  15382498 ttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtgtc 15382439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 40131679 - 40131629
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattatta 216  Q
    |||||||||||||||||||| | | |||||||| || ||||||||||||||    
T  40131679 gacaccgatatttataattaaactgaattatgtgattttttcaaattatta 40131629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 6247680 - 6247588
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccg 258  Q
    |||||||| | || |||||||| | |||||||| || ||||||||||||||    | ||| ||||||||||| ||| ||||||| ||||||||    
T  6247680 gacaccgacacttgtaattacactgaattatgtgattttttcaaattattagatgtgtcggcgtgtcagtgtgcgtatcgtgtccggtgtccg 6247588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 12641709 - 12641657
Alignment:
Q  189 taaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgt 241  Q
    |||||||||| || |||| ||||||||||| || ||||||||||| |||||||    
T  12641709 taaattatgtgatttttttaaattattaactatgtcgacgtgtcattgtccgt 12641657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 262
Target Start/End: Complemental strand, 27932201 - 27932173
Alignment:
Q  234 gtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||||||||||||||||||||||||    
T  27932201 gtgtccgtgtcgtgtctggtgtccgtgtc 27932173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 262
Target Start/End: Complemental strand, 35017083 - 35016999
Alignment:
Q  178 tataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||||| |||||||||| || || |||||||||||    ||||| |||||| |||| | | |||||| |||||||||||||    
T  35017083 tataattacactaaattatgtgattttctcaaattattagtggtttcggcgtgtcggtgttcatatcgtgtatggtgtccgtgtc 35016999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 241
Target Start/End: Complemental strand, 39698648 - 39698524
Alignment:
Q  117 gattaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattatta 216  Q
    ||||||||||||||| |||||| |    |||||||| |||||| | || ||||| || | || |||||||| | |||||||| || ||||||||||||||    
T  39698648 gattaggcgtgtctcggtgtcggatacatgtcgtgtccgacaccgacacgacactgacacttgtaattacactgaattatgtgattttttcaaattatta 39698549  T
Q  217 accatttcgacgtgtcagtgtccgt 241  Q
     |  | ||  |||||||||||||||    
T  39698548 gctgtgtcagcgtgtcagtgtccgt 39698524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 42469263 - 42469183
Alignment:
Q  182 attacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||| |||| ||||| || || ||||||||||| || | ||| ||||||| | ||||||||||||  ||||||||||||    
T  42469263 attacactaaaatatgtcattttctcaaattattatccgtgtcggcgtgtcattatccgtgtcgtgttcggtgtccgtgtc 42469183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 43001844 - 43001780
Alignment:
Q  180 taattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtc 244  Q
    |||||||| | |||||||| || |||||||||||||| |  | ||||| ||||||||||||||||    
T  43001844 taattacactgaattatgtaattttttcaaattattagcagtgtcgacatgtcagtgtccgtgtc 43001780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 145 - 262
Target Start/End: Complemental strand, 22652055 - 22651938
Alignment:
Q  145 tgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtc 244  Q
    |||||||| |||||| | || |||||||| | || |||||| ||| |||||||| || |||||||||||||| |  | ||| ||||||||||||||||||    
T  22652055 tgtcgtgtccgacaccgacacgacaccgacacttgtaattatattgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 22651956  T
Q  245 gtgtctggtgtccgtgtc 262  Q
    ||||| |||||| |||||    
T  22651955 gtgtccggtgtcagtgtc 22651938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 166 - 249
Target Start/End: Complemental strand, 20873127 - 20873044
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtc 249  Q
    |||||||| | || |||||||| |||||||||| || |||||||||||||| | || ||| |||||||||||||||||||||||    
T  20873127 gacaccgacacttgtaattacactaaattatgtgattttttcaaattattatctatgtcggcgtgtcagtgtccgtgtcgtgtc 20873044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 262
Target Start/End: Original strand, 2572035 - 2572153
Alignment:
Q  144 gtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgt 243  Q
    ||||||||| |||||| | || |||||||| | || |||||||| |||||||||| || ||||||||||||||    | |||||||||| || |||||||    
T  2572035 gtgtcgtgtccgacacagacacgacaccgacacttgtaattacactaaattatgtgattttttcaaattattaggtgtgtcgacgtgtcggtatccgtgt 2572134  T
Q  244 cgtgtctggtgtccgtgtc 262  Q
    ||||||  |||||||||||    
T  2572135 cgtgtccagtgtccgtgtc 2572153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 241
Target Start/End: Original strand, 15816081 - 15816205
Alignment:
Q  117 gattaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattatta 216  Q
    ||||||||||||| | |||||| | | ||||||||| ||||||   || |||||||| | ||||||||||| |||||||||| || ||||||||||||||    
T  15816081 gattaggcgtgtcccggtgtcggattcgtgtcgtgtccgacaccaacacgacaccgacacttataattacactaaattatgtgattttttcaaattatta 15816180  T
Q  217 accatttcgacgtgtcagtgtccgt 241  Q
        | ||| |||||||||||||||    
T  15816181 gttgtgtcggcgtgtcagtgtccgt 15816205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 260
Target Start/End: Original strand, 18170483 - 18170577
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtg 260  Q
    |||||||| |||| |||||||||| |||||||| || |||||||||| ||||   | ||| ||||||||||||||||||||| | ||| ||||||    
T  18170483 gacaccgacatttgtaattacattgaattatgtaattttttcaaatttttaattgtgtcggcgtgtcagtgtccgtgtcgtgaccggtatccgtg 18170577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 260
Target Start/End: Original strand, 18634051 - 18634145
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtg 260  Q
    |||||||| |||| |||||||||| |||||||| || |||||||||| ||||   | ||| ||||||||||||||||||||| | ||| ||||||    
T  18634051 gacaccgacatttgtaattacattgaattatgtaattttttcaaatttttaattgtgtcggcgtgtcagtgtccgtgtcgtgaccggtatccgtg 18634145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 262
Target Start/End: Complemental strand, 44067563 - 44067478
Alignment:
Q  177 ttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    ||||||||||| |  ||||||| || || ||||||||||| || | ||| |||||||||||| |||| ||||||||||||||||||    
T  44067563 ttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtcggtgtggtgtctggtgtccgtgtc 44067478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 4298886 - 4298970
Alignment:
Q  165 tgacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtc 249  Q
    ||||||||| | || ||||||||||||||||||| || ||||||||||||||||  | ||| ||||| ||| || ||||||||||    
T  4298886 tgacaccgacacttgtaattacattaaattatgtgattttttcaaattattaactgtgtcggcgtgttagtatctgtgtcgtgtc 4298970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 264
Target Start/End: Original strand, 29510256 - 29510403
Alignment:
Q  117 gattaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattatta 216  Q
    ||||||| ||||| | |||||| ||  | ||||||| |||||| | ||  ||||||| | || |||||| | | |||| ||| || ||||||||||||||    
T  29510256 gattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccgacactacaccgacacttgtaattatactgaattttgtgattttttcaaattatta 29510355  T
Q  217 accatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtcag 264  Q
     |  | ||| ||||||||||||||||||||||| ||||||| ||||||    
T  29510356 gctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccatgtcag 29510403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 262
Target Start/End: Complemental strand, 18964167 - 18964133
Alignment:
Q  228 gtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||||||||||||||||||||||||||||||    
T  18964167 gtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 18964133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 249
Target Start/End: Complemental strand, 8343431 - 8343291
Alignment:
Q  109 actcttcagattaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacac-tgtcatgacaccgatatttataattacattaaattatgttatattttc 207  Q
    ||||||| ||||||||||||| | |||||| ||  |||||||||  ||||| ||| | ||||| || | || |||||||| |||||||||| || |||||    
T  8343431 actcttcggattaggcgtgtcccggtgtcggacacgtgtcgtgtcggacacgtgt-acgacactgacacttgtaattacactaaattatgtgattttttc 8343333  T
Q  208 aaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtc 249  Q
    ||||||||| | || |||  ||||| ||||| ||||||||||    
T  8343332 aaattattagctatgtcggtgtgtcggtgtcagtgtcgtgtc 8343291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 262
Target Start/End: Original strand, 24413624 - 24413657
Alignment:
Q  229 tgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    ||||||||||||||||||||||||||||||||||    
T  24413624 tgtcagtgtccgtgtcgtgtctggtgtccgtgtc 24413657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 255
Target Start/End: Complemental strand, 36934716 - 36934639
Alignment:
Q  178 tataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgt 255  Q
    |||||||||| | |||||||| || ||||| |||||||| |  | ||||||||| |||||||||||||||| ||||||    
T  36934716 tataattacaatgaattatgtgattttttcgaattattagcggtgtcgacgtgttagtgtccgtgtcgtgtttggtgt 36934639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 251
Target Start/End: Complemental strand, 3677843 - 3677759
Alignment:
Q  167 acaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctg 251  Q
    |||||||||  |||||||||||  |||||||| || |||| ||||||||||   | |||| |||||||| |||||||||||||||    
T  3677843 acaccgatacatataattacatagaattatgtgattttttaaaattattaattgtgtcgatgtgtcagtatccgtgtcgtgtctg 3677759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 261
Target Start/End: Original strand, 926850 - 926884
Alignment:
Q  227 cgtgtcagtgtccgtgtcgtgtctggtgtccgtgt 261  Q
    ||||||||||||||||||||||| |||||||||||    
T  926850 cgtgtcagtgtccgtgtcgtgtccggtgtccgtgt 926884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 12936515 - 12936569
Alignment:
Q  189 taaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgt 243  Q
    |||||||||| || || ||||||||||||| || ||||||||||||| |||||||    
T  12936515 taaattatgtgattttatcaaattattaacaatgtcgacgtgtcagtatccgtgt 12936569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 262
Target Start/End: Original strand, 22197757 - 22197839
Alignment:
Q  180 taattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||| |||||||||| |  |||||||||||||| |  | | | ||||| |||||| |||||||||| ||||||||||||    
T  22197757 taattacactaaattatgtgaatttttcaaattattagctgtgttggcgtgttagtgtctgtgtcgtgtccggtgtccgtgtc 22197839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 26915257 - 26915338
Alignment:
Q  182 attacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtcag 264  Q
    ||||||||||||||||| || || ||||| | ||| || | |||||||||| ||||| ||||||| || ||||||||||||||    
T  26915257 attacattaaattatgtcattttctcaaaattttatccgtgtcgacgtgtccgtgtcagtgtcgtttc-ggtgtccgtgtcag 26915338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 259
Target Start/End: Complemental strand, 31557055 - 31556962
Alignment:
Q  165 tgacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgt 259  Q
    ||||||||| | || |||||||| | |||||||| || ||||||||||||||||  | ||| |||||||||| || |||| |||| |||||||||    
T  31557055 tgacaccgaaacttgtaattacactgaattatgtgat-ttttcaaattattaactgtgtcggcgtgtcagtgaccatgtcatgtccggtgtccgt 31556962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 44505135 - 44505197
Alignment:
Q  167 acaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgt 229  Q
    ||||||| | |||||||||||||||||||| |||| || | ||||||||| | ||||||||||    
T  44505135 acaccgacacttataattacattaaattatattattttgtaaaattattatcaatttcgacgt 44505197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 262
Target Start/End: Complemental strand, 29358023 - 29357938
Alignment:
Q  178 tataattacattaaattatgttatattttcaaa-ttattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    ||||| ||||||||||||||| |  |||||||| ||||||||  | ||||||| ||||||||  ||||||||| ||||||| ||||    
T  29358023 tataaatacattaaattatgtgagtttttcaaaattattaacagtatcgacgtatcagtgtctatgtcgtgtccggtgtccatgtc 29357938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 28642429 - 28642373
Alignment:
Q  203 ttttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgt 259  Q
    ||||||||||||||||| | || | |||||| ||||||||||||||| | |||||||    
T  28642429 ttttcaaattattaaccgtgtcaatgtgtcattgtccgtgtcgtgtccgatgtccgt 28642373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 259
Target Start/End: Original strand, 41838149 - 41838217
Alignment:
Q  191 aattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgt 259  Q
    |||||||| || |||| ||||||||| |  | ||||||||||||||||||| ||||||||  |||||||    
T  41838149 aattatgtgatttttttaaattattagctgtgtcgacgtgtcagtgtccgtatcgtgtcttatgtccgt 41838217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 117 - 246
Target Start/End: Original strand, 36756296 - 36756425
Alignment:
Q  117 gattaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattatta 216  Q
    ||||||||||||  | |||||| || ||||| ||||||||||||  || |||||||| | ||||||||||| | ||||||||||| | ||||||||||||    
T  36756296 gattaggcgtgttgcggtgtcggacatgtgttgtgttcgacactaacacgacaccgacacttataattacactgaattatgttatttcttcaaattatta 36756395  T
Q  217 accatttcgacgtgtcagtgtccgtgtcgt 246  Q
        | |||||||||||||||| |||||||    
T  36756396 gttgtgtcgacgtgtcagtgtctgtgtcgt 36756425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 28412395 - 28412312
Alignment:
Q  179 ataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    ||||||||| | |||||||| || || |||||||||||||  | | ||||||| ||||||||||||||||||||||||||||||    
T  28412395 ataattacactgaattatgtgattttatcaaattattaacggtgttgacgtgttagtgtccgtgtcgtgtctggtgtccgtgtc 28412312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 166 - 259
Target Start/End: Original strand, 20539675 - 20539768
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgt 259  Q
    |||||||| | || |||||||| |||||||| | || |||||||||||||| |  | |||||||||||||||||||||||||||  ||||||||    
T  20539675 gacaccgacacttgtaattacactaaattatatgattttttcaaattattagctgtgtcgacgtgtcagtgtccgtgtcgtgtccagtgtccgt 20539768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 260
Target Start/End: Complemental strand, 23921311 - 23921217
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtg 260  Q
    |||||| ||||||||||||||| | |||||||| || || |||||||||||||  | ||||| ||||| |||| || |||||||| |||||||||    
T  23921311 gacaccaatatttataattacactgaattatgtaattttctcaaattattaacggtatcgacctgtcaatgtctgtatcgtgtctcgtgtccgtg 23921217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 15349893 - 15349816
Alignment:
Q  171 cgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgt 248  Q
    ||||||||||||||| |||||||||||| || |||| |||||| ||||  | ||||||||||| |||| |||||||||    
T  15349893 cgatatttataattatattaaattatgtgatttttttaaattactaacagtatcgacgtgtcattgtctgtgtcgtgt 15349816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 30404865 - 30404934
Alignment:
Q  180 taattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtc 249  Q
    |||||||| | |||||||| || ||||||||||||||||| | ||| |||||||||||||||||| ||||    
T  30404865 taattacactgaattatgtgattttttcaaattattaaccgtgtcggcgtgtcagtgtccgtgtcatgtc 30404934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 262
Target Start/End: Complemental strand, 15972931 - 15972835
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||| | || |||||||| | |||| ||| || |||||||||||||||   | ||| |||||||||||||||||||| ||||||||| |||||    
T  15972931 gacaccgacacttgtaattacactgaattgtgtaattttttcaaattattaattgtgtcggcgtgtcagtgtccgtgtcgtatctggtgtctgtgtc 15972835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 92 - 216
Target Start/End: Complemental strand, 26769643 - 26769519
Alignment:
Q  92 atctatgaattacgaatactcttcagattaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaa 191  Q
    |||||||||  ||| | |||| || ||||||||||||| |||||||| ||  ||||||||| ||| || | ||||||||||| | || ||||||||  |     
T  26769643 atctatgaagcacggacactcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacatgacaccgacacttgtaattacaccag 26769544  T
Q  192 attatgttatattttcaaattatta 216  Q
    || |||| |||||||||||||||||    
T  26769543 ataatgtgatattttcaaattatta 26769519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 251
Target Start/End: Complemental strand, 30335475 - 30335390
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctg 251  Q
    |||||||| |||| |||||||| |||||||||| || ||||||||||||||    | ||| ||||  |||||||||||||||||||    
T  30335475 gacaccgacatttgtaattacactaaattatgtcattttttcaaattattagttgtgtcggcgtgctagtgtccgtgtcgtgtctg 30335390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 247
Target Start/End: Original strand, 1374611 - 1374687
Alignment:
Q  171 cgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtg 247  Q
    |||||||| |||||||| |||||||||| ||  ||| ||||||||||  || ||||||||||||||||  |||||||    
T  1374611 cgatatttttaattacactaaattatgtaattcttttaaattattaagaatgtcgacgtgtcagtgtctatgtcgtg 1374687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 18422021 - 18421941
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgt 246  Q
    |||||||| | || |||||||| | |||||||| ||||||| ||||||||||   | ||| ||||||||||||||||||||    
T  18422021 gacaccgacacttgtaattacactgaattatgtgatatttttaaattattaattgtgtcggcgtgtcagtgtccgtgtcgt 18421941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 245
Target Start/End: Original strand, 30717482 - 30717610
Alignment:
Q  117 gattaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattatta 216  Q
    |||||||||| || |||||||||||  ||||||||| |||||  | || |||| ||| | || |||||||| | |||||||| || ||||||||||||||    
T  30717482 gattaggcgtatcccagtgtcgaacacgtgtcgtgtccgacaacgacacgacatcgacacttgtaattacactgaattatgtgattttttcaaattatta 30717581  T
Q  217 accatttcgacgtgtcagtgtccgtgtcg 245  Q
     |  | |||   |||||||||||||||||    
T  30717582 gctttgtcggtttgtcagtgtccgtgtcg 30717610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 11223808 - 11223914
Alignment:
Q  109 actcttcagattaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttca 208  Q
    |||| |||||||||||||||| | |||||  ||  ||||||||| ||||||   ||||||||||| | || |||||||| | ||||||||||| ||||||    
T  11223808 actcctcagattaggcgtgtcccggtgtcagaca-gtgtcgtgtccgacacctacatgacaccgacacttgtaattacactgaattatgttattttttca 11223906  T
Q  209 aattatta 216  Q
    || |||||    
T  11223907 aaatatta 11223914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 262
Target Start/End: Original strand, 34785045 - 34785079
Alignment:
Q  228 gtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    ||||||||||||||||||||||||| |||||||||    
T  34785045 gtgtcagtgtccgtgtcgtgtctggggtccgtgtc 34785079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 244
Target Start/End: Complemental strand, 37559035 - 37558957
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtc 244  Q
    |||||||| | || |||||||||| |||||||| || ||| |||||||||| |  | ||| ||||||||||||||||||    
T  37559035 gacaccgacacttgtaattacattgaattatgtgatttttacaaattattagctgtgtcggcgtgtcagtgtccgtgtc 37558957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 12940945 - 12941021
Alignment:
Q  175 atttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctg 251  Q
    |||| |||||||| | |||||| | || ||||||||||||||    | || ||||||||||||||||||||||||||    
T  12940945 atttgtaattacactgaattatatgattttttcaaattattagttgtgtcaacgtgtcagtgtccgtgtcgtgtctg 12941021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 262
Target Start/End: Complemental strand, 21616808 - 21616724
Alignment:
Q  178 tataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||||| | |||||||| || || ||||||||||| |  | ||| |||||| ||||||||||||||||  ||||| |||||    
T  21616808 tataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtccgtgtccgtgtcgtgtcatgtgtctgtgtc 21616724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 262
Target Start/End: Complemental strand, 46740 - 46644
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||| |||| |||||||| | |||||||| || ||||||||||||||||  | ||| ||||||| ||||||||||||||| | ||||||||||    
T  46740 gacaccgacatttgtaattacactgaattatgtgattttttcaaattattaactgtgtcggcgtgtcattgtccgtgtcgtgtccgatgtccgtgtc 46644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 251
Target Start/End: Complemental strand, 14216999 - 14216865
Alignment:
Q  117 gattaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattatta 216  Q
    ||||||| ||||| |||||||| ||  ||||||||| |||||||  || ||||| || | || |||||||| | |||||| | ||||||| |||||||||    
T  14216999 gattaggtgtgtcccagtgtcgtacacgtgtcgtgtccgacactaacacgacacggacacttgtaattacactgaattatatgatattttaaaattatta 14216900  T
Q  217 accatttcgacgtgtcagtgtccgtgtcgtgtctg 251  Q
        | |||||||||||||||||||||||||||||    
T  14216899 gttgtgtcgacgtgtcagtgtccgtgtcgtgtctg 14216865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 251
Target Start/End: Complemental strand, 14223128 - 14222994
Alignment:
Q  117 gattaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattatta 216  Q
    ||||||| ||||| |||||||| ||  ||||||||| |||||||  || ||||| || | || |||||||| | |||||| | ||||||| |||||||||    
T  14223128 gattaggtgtgtcccagtgtcgtacacgtgtcgtgtccgacactaacacgacacggacacttgtaattacactgaattatatgatattttaaaattatta 14223029  T
Q  217 accatttcgacgtgtcagtgtccgtgtcgtgtctg 251  Q
        | |||||||||||||||||||||||||||||    
T  14223028 gttgtgtcgacgtgtcagtgtccgtgtcgtgtctg 14222994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 260
Target Start/End: Complemental strand, 28918059 - 28917965
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtg 260  Q
    |||||||| | || |||||||| | |||||||| || |||||||||||||| | || ||| ||||||||| ||||||||||||| ||||||||||    
T  28918059 gacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctatgtcggcgtgtcagtttccgtgtcgtgtccggtgtccgtg 28917965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 177 - 262
Target Start/End: Original strand, 24205053 - 24205138
Alignment:
Q  177 ttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    ||||||||||| |  ||||||| || || ||||||||||| || | ||| ||||||||||||||||||||||| ||||||||||||    
T  24205053 ttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtc 24205138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 262
Target Start/End: Original strand, 15796295 - 15796391
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||| | || |||||||| | |||||| | || ||||||||||||||||  | ||| ||||||| ||||||||||||||| ||||||||||||    
T  15796295 gacaccgacaattgtaattacactgaattatatgattttttcaaattattaactgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtgtc 15796391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 260
Target Start/End: Original strand, 41961602 - 41961745
Alignment:
Q  117 gattaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattatta 216  Q
    ||||||||||||| |||||||| ||  ||||||||| ||| || | || |||||||| | || ||||||||   ||| |||| |||||||||||||||||    
T  41961602 gattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacacgacaccgacacttgtaattacaccgaataatgtgatattttcaaattatta 41961701  T
Q  217 accatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtg 260  Q
        |  || |||||||||||| |||||||||| ||||||||||    
T  41961702 gttgtgacggcgtgtcagtgtctgtgtcgtgtccggtgtccgtg 41961745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 3164051 - 3164122
Alignment:
Q  191 aattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||| || |||||||||||||| |  | |||||||| || ||||||||||||||| ||||||||||||    
T  3164051 aattatgtgattttttcaaattattagctgtgtcgacgtgccattgtccgtgtcgtgtccggtgtccgtgtc 3164122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 10268501 - 10268567
Alignment:
Q  180 taattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgt 246  Q
    |||||||| |||||||||| || ||||||||||||||||  | ||| ||||||||||||| ||||||    
T  10268501 taattacactaaattatgtgattttttcaaattattaactgtgtcggcgtgtcagtgtccatgtcgt 10268567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 39002078 - 39001996
Alignment:
Q  178 tataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtg 260  Q
    |||||||||||| |||||||| || ||||||||||  || |||| |||  |||||||||| ||||||||||  ||||||||||    
T  39002078 tataattacattgaattatgtgattttttcaaattcctatccatgtcggtgtgtcagtgtacgtgtcgtgttcggtgtccgtg 39001996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 259
Target Start/End: Complemental strand, 55401133 - 55401040
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgt 259  Q
    |||||||| | || |||||||| |||||||||| || ||||||||||||||    | ||| ||| |||||||||||||||| || |||||||||    
T  55401133 gacaccgacacttgtaattacactaaattatgtgattttttcaaattattagttgtgtcggcgtatcagtgtccgtgtcgtatccggtgtccgt 55401040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 750644 - 750716
Alignment:
Q  191 aattatgttatattttcaaattattaaccatttcgacgtgtca-gtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||| |||||||||||||||||    | ||| ||||||| |||||||||||||||| ||||||||||||    
T  750644 aattatgtgatattttcaaattattagttgtgtcgccgtgtcaagtgtccgtgtcgtgtccggtgtccgtgtc 750716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 262
Target Start/End: Complemental strand, 8383315 - 8383219
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||| | ||||||||||| | |||||| | || || ||||||||||| |  | ||| ||||||| |||||||||||||||  |||||||||||    
T  8383315 gacaccgacacttataattacactgaattatatgattttctcaaattattagcggtgtcggcgtgtcaatgtccgtgtcgtgtccagtgtccgtgtc 8383219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 261
Target Start/End: Original strand, 10335287 - 10335382
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgt 261  Q
    |||||||| | || || ||||| |||| ||||| |  ||||||||||||||    | ||| ||||||||||||||||||||||| |||||||||||    
T  10335287 gacaccgacacttgtatttacactaaaatatgtgactttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgt 10335382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 244
Target Start/End: Original strand, 25948899 - 25948966
Alignment:
Q  177 ttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtc 244  Q
    ||||||||||| | |||||||| || |||||||||||||| || | ||| | ||||||||||||||||    
T  25948899 ttataattacactgaattatgtgattttttcaaattattagccgtatcggcatgtcagtgtccgtgtc 25948966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 249
Target Start/End: Original strand, 26492206 - 26492289
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtc 249  Q
    |||||||||| || |||||||| | |||| | | || |||||||||||||| |  | ||| |||||||||||||||||||||||    
T  26492206 gacaccgatacttgtaattacactgaattgtatgattttttcaaattattagctctgtcggcgtgtcagtgtccgtgtcgtgtc 26492289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 259
Target Start/End: Original strand, 8587022 - 8587115
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgt 259  Q
    |||||||| | || |||||||| | |||||||| || ||||||||||| ||    | ||| |||||||||||||||||| |||| |||||||||    
T  8587022 gacaccgacacttgtaattacacttaattatgtgattttttcaaattactagatgtgtcggcgtgtcagtgtccgtgtcatgtccggtgtccgt 8587115  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 256
Target Start/End: Complemental strand, 16789093 - 16788980
Alignment:
Q  143 tgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtg 242  Q
    |||||| ||| |||||||| || |||||| | | ||||||||||| | |||||| | || |||| ||||||||||| || |||  || ||||| ||||||    
T  16789093 tgtgtcatgtccgacactgacacgacaccaacacttataattacactgaattatatgatttttttaaattattaactatatcggtgtatcagtatccgtg 16788994  T
Q  243 tcgtgtctggtgtc 256  Q
    || | |||||||||    
T  16788993 tcatatctggtgtc 16788980  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 260
Target Start/End: Complemental strand, 3610677 - 3610597
Alignment:
Q  180 taattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtg 260  Q
    |||||||| | | ||||||||| |||| |||||||||||  | | | |||||||||||| |||||||||| ||||| ||||    
T  3610677 taattacactgagttatgttatttttttaaattattaactgtgttggcgtgtcagtgtctgtgtcgtgtccggtgttcgtg 3610597  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 260
Target Start/End: Complemental strand, 13414473 - 13414441
Alignment:
Q  228 gtgtcagtgtccgtgtcgtgtctggtgtccgtg 260  Q
    ||||| |||||||||||||||||||||||||||    
T  13414473 gtgtcggtgtccgtgtcgtgtctggtgtccgtg 13414441  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 262
Target Start/End: Original strand, 16000017 - 16000113
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||| | || || ||||| | ||||||||||| |||| |||||||||    | ||| |||||||||||| |||||||||  ||||||||||||    
T  16000017 gacaccgacacttgtagttacactgaattatgttatttttttaaattattagttgtgtcggcgtgtcagtgtctgtgtcgtgttcggtgtccgtgtc 16000113  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 259
Target Start/End: Original strand, 32429378 - 32429474
Alignment:
Q  163 catgacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgt 259  Q
    |||||||||||||||||||||| || | |||||||| || || | ||||||||| |  | |||  |||||| ||| ||||| ||||| |||||||||    
T  32429378 catgacaccgatatttataattgcactgaattatgtgattttcttaaattattagcgttgtcggagtgtcaatgttcgtgttgtgtccggtgtccgt 32429474  T

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Target: scaffold0007 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 177 - 262
Target Start/End: Original strand, 225280 - 225365
Alignment:
Q  177 ttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||||||||  ||||||| || || ||||||||||| |  | ||| ||||||||||||||||||||||| ||||||||||||    
T  225280 ttataattacattgtattatgtcattttctcaaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtc 225365  T

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Target: scaffold0053 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 262
Target Start/End: Complemental strand, 8856 - 8760
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||| | || |||||||| ||||| || | || |||||||||||||| |  | ||| ||||||||||||||||||||||| ||||||||||||    
T  8856 gacaccgacacttgtaattacactaaataatatgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtc 8760  T

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Target: scaffold0136 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 117 - 262
Target Start/End: Original strand, 3801 - 3951
Alignment:
Q  117 gattaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattatta 216  Q
    |||||||||||||||  ||||| || |||||||||| ||||||   || ||||| || | || |||||||| | |||||||| || |||| |||||||||    
T  3801 gattaggcgtgtctcgatgtcggacatgtgtcgtgtccgacaccaacacgacactgacacttgtaattacactgaattatgtgatttttttaaattatta 3900  T
Q  217 accatttcgacgtgtcagtgtc-----cgtgtcgtgtctggtgtccgtgtc 262  Q
    ||| | ||| | | ||||||||     ||||||||||||||||||||||||    
T  3901 accgtgtcggcatatcagtgtctgtgtcgtgtcgtgtctggtgtccgtgtc 3951  T

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Target: scaffold0168 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 21074 - 21006
Alignment:
Q  193 ttatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgt 261  Q
    |||||| || || |||||||||||||| | ||  | |||||||||||||||||||||||||||||||||    
T  21074 ttatgtgattttctcaaattattaaccgtgtcagcatgtcagtgtccgtgtcgtgtctggtgtccgtgt 21006  T

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Target: scaffold0126 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 262
Target Start/End: Complemental strand, 19202 - 19107
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||| |||| |||| ||| | |||||||| || |||| |||||||||||||| ||| ||||| |||||||||||| | |||| ||||||||||    
T  19202 gacaccgacatttttaatcacactgaattatgtcatttttt-aaattattaaccatgtcggcgtgttagtgtccgtgtcatatctgatgtccgtgtc 19107  T

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Target: scaffold0227 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 262
Target Start/End: Complemental strand, 15052 - 15017
Alignment:
Q  227 cgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    ||||||||||||||||||||||||||||||||||||    
T  15052 cgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 15017  T

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Target: scaffold0223 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 259
Target Start/End: Complemental strand, 20216 - 20137
Alignment:
Q  180 taattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgt 259  Q
    |||||||| | |||||||| || |||||||||||||| |  | ||| ||||||| ||||||||||||||| |||||||||    
T  20216 taattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 20137  T

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Target: scaffold0021 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 262
Target Start/End: Complemental strand, 130526 - 130444
Alignment:
Q  180 taattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||| | |||||||| || |||||||| |||||||  | ||| | ||||| ||||||||||||||| ||||||||||||    
T  130526 taattacactgaattatgtgattttttcaaactattaactgtgtcggcttgtcattgtccgtgtcgtgtccggtgtccgtgtc 130444  T

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Target: scaffold0050 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 243
Target Start/End: Complemental strand, 70336 - 70259
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgt 243  Q
    |||||||| | ||||||||||| | ||||||||||| ||||||||||||||||  | ||||| |||| ||||| ||||    
T  70336 gacaccgacacttataattacactgaattatgttattttttcaaattattaactgtgtcgacatgtctgtgtctgtgt 70259  T

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Target: scaffold0008 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 262
Target Start/End: Original strand, 263324 - 263469
Alignment:
Q  117 gattaggcgtgtctcagtgtcgaacttgtgtcgtgttcgacactgtcatgacaccgatatttataattacattaaattatgttatattttcaaattatta 216  Q
    ||||||||||||||  || ||||||  |||||||||  ||||| | || ||||| || | ||||||||||| | ||||||||  | || |||||||||||    
T  263324 gattaggcgtgtcttggtatcgaacacgtgtcgtgtctgacaccgacacgacactgacacttataattacactgaattatgtggttttctcaaattatta 263423  T
Q  217 accatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
     |  | | ||| |||||||||||||||||| ||  |||||||||||    
T  263424 gcagtgttgacatgtcagtgtccgtgtcgtatccagtgtccgtgtc 263469  T

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Target: scaffold0475 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 262
Target Start/End: Complemental strand, 3317 - 3278
Alignment:
Q  223 tcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    ||||||||||||| ||||||||||||| ||||||||||||    
T  3317 tcgacgtgtcagtatccgtgtcgtgtccggtgtccgtgtc 3278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 262
Target Start/End: Complemental strand, 8667 - 8628
Alignment:
Q  223 tcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  8667 tcgacgtgtcagtgtccatgtcgtgtccggtgtccgtgtc 8628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 262
Target Start/End: Original strand, 463 - 559
Alignment:
Q  166 gacaccgatatttataattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctggtgtccgtgtc 262  Q
    |||||||| | || |||||||| | |||| ||| || |||||||||||||| |  | ||| ||| |||||||||||| |||||  ||||||||||||    
T  463 gacaccgacacttgtaattacactgaattttgtgattttttcaaattattagcagtgtcggcgtatcagtgtccgtggcgtgttcggtgtccgtgtc 559  T

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Target: scaffold0103 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 51855 - 51791
Alignment:
Q  180 taattacattaaattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtc 244  Q
    |||||||| | |||||||| || |||||||||||||| |  | ||| ||||||||||||||||||    
T  51855 taattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 51791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 192275 - 192335
Alignment:
Q  191 aattatgttatattttcaaattattaaccatttcgacgtgtcagtgtccgtgtcgtgtctg 251  Q
    |||||||| || || |||||||||||||  | ||| ||||||||||||||| |||||||||    
T  192275 aattatgtaattttctcaaattattaacggtgtcggcgtgtcagtgtccgtatcgtgtctg 192335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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