View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4518_low_10 (Length: 326)

Name: NF4518_low_10
Description: NF4518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4518_low_10
NF4518_low_10
[»] chr5 (1 HSPs)
chr5 (18-319)||(34150158-34150459)
[»] chr3 (3 HSPs)
chr3 (160-291)||(30422040-30422171)
chr3 (200-260)||(30405038-30405098)
chr3 (215-252)||(30401692-30401729)
[»] chr2 (3 HSPs)
chr2 (185-260)||(31445752-31445827)
chr2 (158-297)||(41442282-41442421)
chr2 (158-295)||(41459064-41459201)
[»] chr4 (4 HSPs)
chr4 (163-252)||(23832613-23832702)
chr4 (163-295)||(23819516-23819648)
chr4 (163-266)||(23828766-23828869)
chr4 (176-252)||(23824849-23824925)


Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 319
Target Start/End: Original strand, 34150158 - 34150459
Alignment:
Q  18 acatcggcttttggtttatgagtttttgaccaaaggcagtctggataatcacttattcaggagtaagttactgattttccttcaaaannnnnnnatgctt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  34150158 acatcggcttttggtttatgagtttttgaccaaaggcagtctggataatcacttattcaggagtaagttactgattttccttcaaaattctcttatgctt 34150257  T
Q  118 aacactatcaaatacctcaaactctaatatatcaactctttttggaacaggagcttcttattttcaaccactttcttggagcatccgaatgaaggttgct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34150258 aacactatcaaatacctcaaactctaatatatcaactctttttggaacaggagcttcttattttcaaccactttcttggagcatccgaatgaaggttgct 34150357  T
Q  218 cttgatgctgctaagggtcttgcatatcttcacagcgatgaagcaaaagtgatatatcgtgactttaaaacttcaaatatattgctcgacacagtaagta 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34150358 cttgatgctgctaagggtcttgcatatcttcacagcgatgaagcaaaagtgatatatcgtgactttaaaacttcaaatatattgctcgacacagtaagta 34150457  T
Q  318 ta 319  Q
    ||    
T  34150458 ta 34150459  T

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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 160 - 291
Target Start/End: Original strand, 30422040 - 30422171
Alignment:
Q  160 tggaacaggagcttcttattttcaaccactttcttggagcatccgaatgaaggttgctcttgatgctgctaagggtcttgcatatcttcacagcgatgaa 259  Q
    |||| ||||||||||||| ||||| ||||| |||||||  |||||||||||| | ||||||||| |||||||||||||||||| ||||||||| ||||||    
T  30422040 tggatcaggagcttcttactttcagccactctcttggaaaatccgaatgaagatagctcttgattctgctaagggtcttgcatttcttcacagtgatgaa 30422139  T
Q  260 gcaaaagtgatatatcgtgactttaaaacttc 291  Q
    |   ||||||||||||| ||||| ||||||||    
T  30422140 gtcgaagtgatatatcgagacttcaaaacttc 30422171  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 30405038 - 30405098
Alignment:
Q  200 atccgaatgaaggttgctcttgatgctgctaagggtcttgcatatcttcacagcgatgaag 260  Q
    |||||||||||| | |||||||||| ||||||||||||||||| ||||||||| |||||||    
T  30405038 atccgaatgaagatagctcttgatgttgctaagggtcttgcatttcttcacagtgatgaag 30405098  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 30401692 - 30401729
Alignment:
Q  215 gctcttgatgctgctaagggtcttgcatatcttcacag 252  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  30401692 gctcttgatgctgcaaagggtcttgcatttcttcacag 30401729  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 260
Target Start/End: Original strand, 31445752 - 31445827
Alignment:
Q  185 ccactttcttggagcatccgaatgaaggttgctcttgatgctgctaagggtcttgcatatcttcacagcgatgaag 260  Q
    ||||| |||||||  |||||||||||| | |||||||||||||||||||||||||||| |||||||| ||||||||    
T  31445752 ccactctcttggaaaatccgaatgaagatagctcttgatgctgctaagggtcttgcatttcttcacatcgatgaag 31445827  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 158 - 297
Target Start/End: Original strand, 41442282 - 41442421
Alignment:
Q  158 tttggaacaggagcttcttattttcaaccactttcttggagcatccgaatgaaggttgctcttgatgctgctaagggtcttgcatatcttcacagcgatg 257  Q
    |||| ||||||||  || ||||||||||| ||||| |||||| | ||  |||||||||||||||| ||||| || || ||||||| ||| ||||| ||||    
T  41442282 tttgaaacaggaggatcatattttcaacctctttcatggagccttcgtctgaaggttgctcttgacgctgccaaagggcttgcatttctgcacagtgatg 41442381  T
Q  258 aagcaaaagtgatatatcgtgactttaaaacttcaaatat 297  Q
    ||   |||||||||||| | || ||||| |||||||||||    
T  41442382 aaaataaagtgatatatagagattttaagacttcaaatat 41442421  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 295
Target Start/End: Original strand, 41459064 - 41459201
Alignment:
Q  158 tttggaacaggagcttcttattttcaaccactttcttggagcatccgaatgaaggttgctcttgatgctgctaagggtcttgcatatcttcacagcgatg 257  Q
    |||| ||||||||  || ||||| ||||| ||||| |||||| ||||  |||||||||||||||| ||||| || || ||||||| ||| ||||| | ||    
T  41459064 tttgaaacaggaggatcatatttccaacctctttcatggagcctccgtctgaaggttgctcttgacgctgccaaagggcttgcatttctgcacagtgctg 41459163  T
Q  258 aagcaaaagtgatatatcgtgactttaaaacttcaaat 295  Q
    ||   |||||||||||| | || ||||| |||||||||    
T  41459164 aaaataaagtgatatatagagattttaagacttcaaat 41459201  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 23832613 - 23832702
Alignment:
Q  163 aacaggagcttcttattttcaaccactttcttggagcatccgaatgaaggttgctcttgatgctgctaagggtcttgcatatcttcacag 252  Q
    ||||||||  || ||||||||||| |||||||||||| | ||  ||||||||||||||| |||||| || || ||||||| |||||||||    
T  23832613 aacaggaggctcatattttcaacctctttcttggagcctacgtttgaaggttgctcttggtgctgccaaaggccttgcatttcttcacag 23832702  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 163 - 295
Target Start/End: Original strand, 23819516 - 23819648
Alignment:
Q  163 aacaggagcttcttattttcaaccactttcttggagcatccgaatgaaggttgctcttgatgctgctaagggtcttgcatatcttcacagcgatgaagca 262  Q
    ||||||||  || ||||||||||| |||||||||||| ||||  ||||||||||| ||| |||||| || || ||||||| ||||||| | | | || ||    
T  23819516 aacaggaggctcatattttcaacctctttcttggagcctccggttgaaggttgctgttggtgctgccaaaggccttgcatttcttcacggtgctcaaaca 23819615  T
Q  263 aaagtgatatatcgtgactttaaaacttcaaat 295  Q
    |||| ||| || ||||| || || |||||||||    
T  23819616 aaagcgatgtaccgtgatttcaagacttcaaat 23819648  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 266
Target Start/End: Original strand, 23828766 - 23828869
Alignment:
Q  163 aacaggagcttcttattttcaaccactttcttggagcatccgaatgaaggttgctcttgatgctgctaagggtcttgcatatcttcacagcgatgaagca 262  Q
    ||||||||  || ||||||||||| |||||||||||| | ||  ||||||||||||||| ||||||||| || ||| ||| ||||| || || |||| ||    
T  23828766 aacaggaggctcatattttcaacctctttcttggagcctacgtttgaaggttgctcttggtgctgctaaaggccttacatttcttcgcaacgctgaaaca 23828865  T
Q  263 aaag 266  Q
    ||||    
T  23828866 aaag 23828869  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 252
Target Start/End: Original strand, 23824849 - 23824925
Alignment:
Q  176 tattttcaaccactttcttggagcatccgaatgaaggttgctcttgatgctgctaagggtcttgcatatcttcacag 252  Q
    ||||||||||| |||||||||||| | ||  ||||||||||||||| |||||| ||  |||||||||  ||||||||    
T  23824849 tattttcaacctctttcttggagcctacgtttgaaggttgctcttggtgctgccaaatgtcttgcattccttcacag 23824925  T

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