View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4518_low_11 (Length: 317)
Name: NF4518_low_11
Description: NF4518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4518_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 5376067 - 5375763
Alignment:
| Q |
1 |
aacatttgaaagattggcattaaacaacgtaaagaatgcatgcttgagcatactcagtattgtaa----acaaagtgattgatatcgtgtccagaaggtg |
96 |
Q |
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| T |
5376067 |
aacatttgaaagattggcattaaacaacgcaaagaatgcatgcttgagcatactcagtattgtaattaaacaaagtgattgatatcgtgtccagaaggtg |
5375968 |
T |
|
| Q |
97 |
atatgagatatgagcatgtgggttcggatacaaacgcaaatttcatgcatttatataatcatctagagtatattaaaaagaaaaattaagtatccttgtt |
196 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5375967 |
atatgagatatgagcatgtgggttcggatacaaatgcaaatttcatgcatttatataatcatctagagtatattaaaaagaaaaattaagtatccttgtt |
5375868 |
T |
|
| Q |
197 |
aaagggaaacaacaaattactccaagtacaaccagtcaaacggtgtgaatgaggtatacactagcagtagcagtagaagtattaacaagagttgaatata |
296 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5375867 |
aaagggaaacaacaaattactccaagtacaatcagtcaaacggtgtgaatgaggtatacactagcagtagcagtagaagtattaacaagagttgaatata |
5375768 |
T |
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| Q |
297 |
tgatg |
301 |
Q |
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||||| |
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| T |
5375767 |
tgatg |
5375763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 5368567 - 5368810
Alignment:
| Q |
1 |
aacatttgaaagattggcattaaacaacgtaaagaatgcatgcttgagcatactcagtattgtaaacaaagtgattgatatcgtgtccagaaggtgatat |
100 |
Q |
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| T |
5368567 |
aacatttgaaagattggcattaaacaacgtaaagaatgcata---------------tattgaaaacaaagtgattgatatcgcgtcctgaatgtgat-- |
5368649 |
T |
|
| Q |
101 |
gagatatgagcatgtg--ggttcgg---atacaaacgcaaatttcatgcatttatataatcatctagagtatattaaaaagaaaaattaagtatccttgt |
195 |
Q |
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| T |
5368650 |
gacatatgagcatatgcaggttcagcatataaaaacacaaattacatgcatttatataatcatctagagtatattgaaaagaaaaattgagtatcctcgt |
5368749 |
T |
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| Q |
196 |
taaagggaaacaacaaattactccaagtacaaccagtcaaacggtgtgaatgaggtataca |
256 |
Q |
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||||||||| |||||||||| |||| |||||||||| ||||||||||||||||||| |
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| T |
5368750 |
caaagggaaatggcaaattactcatagtaacaccagtcaaatggtgtgaatgaggtataca |
5368810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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