View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4518_low_12 (Length: 297)
Name: NF4518_low_12
Description: NF4518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4518_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 11 - 281
Target Start/End: Original strand, 44968684 - 44968954
Alignment:
| Q |
11 |
aattcgataatcaagtggcttctaattagcgatatacctggcttgttgcagcagtataaatcttctcttcaaacctttgggcaatcttccgaagttcatg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44968684 |
aattcgataatcaagtggcttctaattagcgatatacctggcttgttgcagcagtataaatcttctcttcaaacctttgggcaatcttccgaagttcatg |
44968783 |
T |
|
| Q |
111 |
caatccttcttgaccagaaacaggaagatgcctttttaatgtgtccatactccaaaattgaaaaacaatggttcaattattaaataatatgaattattga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44968784 |
caatccttcttgaccagaaacaggaagatgcctttttaatgtgtccatactccaaaattgaaaaacaatggttcaattattaaataatatgaattattga |
44968883 |
T |
|
| Q |
211 |
tatgttatattcattagacaatcctcaaatgatggaatatgactcacatgtaagaagacctaattgaaatc |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44968884 |
tatgttatattcattagacaatcctcaaatgatggaatatgactcacatgtaagaagacctaattgaaatc |
44968954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 11 - 281
Target Start/End: Complemental strand, 40911303 - 40911033
Alignment:
| Q |
11 |
aattcgataatcaagtggcttctaattagcgatatacctggcttgttgcagcagtataaatcttctcttcaaacctttgggcaatcttccgaagttcatg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
40911303 |
aattcgataatcaagtggcttctaattagcgatatacctggcttgttgcagcagtataaatcttatcttcaaacttttgggcaatcttccgaagttcatg |
40911204 |
T |
|
| Q |
111 |
caatccttcttgaccagaaacaggaagatgcctttttaatgtgtccatactccaaaattgaaaaacaatggttcaattattaaataatatgaattattga |
210 |
Q |
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| T |
40911203 |
caatccttcttgaccagaaacaggaagatgcctttttaatgtgtccatactccaaaattgaaaaacaatggttcaattattaaataatatgaattattga |
40911104 |
T |
|
| Q |
211 |
tatgttatattcattagacaatcctcaaatgatggaatatgactcacatgtaagaagacctaattgaaatc |
281 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40911103 |
tatgttatattcattagacaatcctcaaatgatggaatatgactcacatgtaagaagacctaattgaaatc |
40911033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 281
Target Start/End: Original strand, 44982999 - 44983269
Alignment:
| Q |
11 |
aattcgataatcaagtggcttctaattagcgatatacctggcttgttgcagcagtataaatcttctcttcaaacctttgggcaatcttccgaagttcatg |
110 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44982999 |
aatttgataatcaagtggcttctaattagcgatatacctggcttgttgcagcagtataaatcttctcttcaaacctttgggcaatcttccaaagttcatg |
44983098 |
T |
|
| Q |
111 |
caatccttcttgaccagaaacaggaagatgcctttttaatgtgtccatactccaaaattgaaaaacaatggttcaattattaaataatatgaattattga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44983099 |
caatccttcttgaccagaaacaggaagatgcctttttaatgtgtccatactccaaaattgaaaaacaatggttcaattattaaataatatgaattattga |
44983198 |
T |
|
| Q |
211 |
tatgttatattcattagacaatcctcaaatgatggaatatgactcacatgtaagaagacctaattgaaatc |
281 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44983199 |
tatgttatattcattagacaatcctcaaatgatggaatatgactcacatgaaagaagacctaattgaaatc |
44983269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 44974710 - 44974872
Alignment:
| Q |
17 |
ataatcaagtggcttctaattagcgatatacctggcttgttgcagcagtataaatcttctcttcaaacctttgggcaatcttccgaagttcatgcaatcc |
116 |
Q |
| |
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||||||| | ||| ||||||||| ||| ||| ||||||||||||| |||| ||||||| |||||||||| | ||||||||||| ||||||||||||||| |
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| T |
44974710 |
ataatcacgaggcatctaattagagatgtacttggcttgttgcagaagtaaaaatcttgtcttcaaaccgtcaggcaatcttccaaagttcatgcaatcc |
44974809 |
T |
|
| Q |
117 |
ttcttgaccagaaacaggaagatgcctttttaatgtgtccatactccaaaattgaaaaacaat |
179 |
Q |
| |
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|||| |||||||||| ||||||| ||||||||||| |||| || ||||| ||||||||||| |
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| T |
44974810 |
ctcttcaccagaaacaagaagatggctttttaatgtctccaagctgcaaaaatgaaaaacaat |
44974872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 71 - 167
Target Start/End: Original strand, 44997376 - 44997472
Alignment:
| Q |
71 |
tcttctcttcaaacctttgggcaatcttccgaagttcatgcaatccttcttgaccagaaacaggaagatgcctttttaatgtgtccatactccaaaa |
167 |
Q |
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||||||||||||||||||||||| | ||||||||||||||||||| | || |||||||| || |||||| ||| || ||||||||| || ||||| |
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| T |
44997376 |
tcttctcttcaaacctttgggcagccatccgaagttcatgcaatcccttttcaccagaaatagaaagatgtcttagtattgtgtccattctacaaaa |
44997472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 158
Target Start/End: Complemental strand, 2035935 - 2035822
Alignment:
| Q |
45 |
tacctggcttgttgcagcagtataaatcttctcttcaaacctttgggcaatcttccgaagttcatgcaatccttcttgaccagaaacaggaagatgcctt |
144 |
Q |
| |
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|||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||| || ||||||||| |||||||| || |
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| T |
2035935 |
tacctggcttgtcgcagcagtataaatcttatcttcaaacctttgagcaatcttccgaagttcaagcaatccctcagaaccagaaacgggaagatgtttt |
2035836 |
T |
|
| Q |
145 |
tttaatgtgtccat |
158 |
Q |
| |
|
||||||||||||| |
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| T |
2035835 |
cttaatgtgtccat |
2035822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 138
Target Start/End: Complemental strand, 2021747 - 2021654
Alignment:
| Q |
45 |
tacctggcttgttgcagcagtataaatcttctcttcaaacctttgggcaatcttccgaagttcatgcaatccttcttgaccagaaacaggaaga |
138 |
Q |
| |
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||||| |||||| |||| ||| |||||||| |||||||||||||| ||||||||| |||||||| ||||| || | || ||||||||||||| |
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| T |
2021747 |
taccttgcttgtcgcagaagtgtaaatcttatcttcaaacctttgagcaatcttctgaagttcaattaatccctcataactagaaacaggaaga |
2021654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 108
Target Start/End: Complemental strand, 1990185 - 1990122
Alignment:
| Q |
45 |
tacctggcttgttgcagcagtataaatcttctcttcaaacctttgggcaatcttccgaagttca |
108 |
Q |
| |
|
||||||||||| ||| ||||||| ||||| |||||||||||||| |||| ||||||||||||| |
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| T |
1990185 |
tacctggcttgccgcatcagtatagatcttatcttcaaacctttgagcaagcttccgaagttca |
1990122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 158
Target Start/End: Complemental strand, 2019115 - 2019002
Alignment:
| Q |
45 |
tacctggcttgttgcagcagtataaatcttctcttcaaacctttgggcaatcttccgaagttcatgcaatccttcttgaccagaaacaggaagatgcctt |
144 |
Q |
| |
|
|||||||||||| || | |||||||||||| |||||||||| ||| | |||| | |||||||| | ||||| || |||||||||||||| ||| ||| |
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| T |
2019115 |
tacctggcttgtcgcggaagtataaatcttatcttcaaaccgttgagatatctccagaagttcaagtaatccctcggaaccagaaacaggaatatgtctt |
2019016 |
T |
|
| Q |
145 |
tttaatgtgtccat |
158 |
Q |
| |
|
|||| |||||||| |
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|
| T |
2019015 |
cttaacgtgtccat |
2019002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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