View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4518_low_15 (Length: 228)
Name: NF4518_low_15
Description: NF4518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4518_low_15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 26723306 - 26723090
Alignment:
| Q |
11 |
taaaatagatagtctgatattcgaaatagaaacttctaaaccaaaattgacaacatagtcgactcaaaactatacttttcctgaagtatagtaacaaaat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
26723306 |
taaaatagatagtctgatattcgaaatagaaacttctaaaccaaaattgacaacatagtcgactcaaaactatacttttcctaaagtctagtaacaaaa- |
26723208 |
T |
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| Q |
111 |
agatagtcccaatacttgaaatagaaatagctaaaccaaaattcacaacatagtcgactcaaaaatatatttctttaattctagtaacacctcacagtaa |
210 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
26723207 |
agatagtcccaatactcgaaatagaaatagctaaaccaaaattcacaacatagtcgactcaaaaatatacttctttaattctagtaacgcctcacagtaa |
26723108 |
T |
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| Q |
211 |
aacaaagtctcatttttc |
228 |
Q |
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|||||||||||||||||| |
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| T |
26723107 |
aacaaagtctcatttttc |
26723090 |
T |
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Back To:
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Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 11 - 179
Target Start/End: Complemental strand, 2988050 - 2987880
Alignment:
| Q |
11 |
taaaatagatagt--ctgatattcgaaatagaaacttctaaaccaaaattgacaacatagtcgactcaaaactatacttttcctgaagtatagtaacaaa |
108 |
Q |
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||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
2988050 |
taaaatagatagtttctgatactcgaaatagaaacttctaaaccaaaattgacaacataatcgactcaaaactatacttttcctgaagtctagtaacaaa |
2987951 |
T |
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| Q |
109 |
atagatagtcccaatacttgaaatagaaatagctaaaccaaaattcacaacatagtcgactcaaaaatata |
179 |
Q |
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|||||||||| | ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2987950 |
atagatagtctcgatactctaaatagaaataactaaaccaaaattcacaacatagtcgactcaaaaatata |
2987880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 11 - 179
Target Start/End: Original strand, 45116328 - 45116498
Alignment:
| Q |
11 |
taaaatagatagt--ctgatattcgaaatagaaacttctaaaccaaaattgacaacatagtcgactcaaaactatacttttcctgaagtatagtaacaaa |
108 |
Q |
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||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
45116328 |
taaaatagatagtttctgatactcgaaatagaaacttctaaaccaaaattgacaacataatcgactcaaaactatacttttcctgaagtctagtaacaaa |
45116427 |
T |
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| Q |
109 |
atagatagtcccaatacttgaaatagaaatagctaaaccaaaattcacaacatagtcgactcaaaaatata |
179 |
Q |
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|||||||||| | ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45116428 |
atagatagtctcgatactctaaatagaaatacctaaaccaaaattcacaacatagtcgactcaaaaatata |
45116498 |
T |
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