View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4518_low_2 (Length: 450)
Name: NF4518_low_2
Description: NF4518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4518_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 17 - 438
Target Start/End: Complemental strand, 41823291 - 41822868
Alignment:
| Q |
17 |
agtttttgtttaaagggtgaaaatagttagcgtcgagttaagctttcgagtcatcaaaaaattcaatgctcaagtataatttattacctctcgtaagctt |
116 |
Q |
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| T |
41823291 |
agtttttgtttaaagggtgaaaatagttagcgtcgagttaagctttcgagtcatcaaaaaattcaatgctcaagtataatttattacctctcgtgagctt |
41823192 |
T |
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| Q |
117 |
gttttcaagtttgaacttcgccattctgaaaatctgctatggacagtaaacctacttaaagccaagttcatattaacatagtcaaataaggtaatcggaa |
216 |
Q |
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| T |
41823191 |
gttttcaagtttgaacttggccattctgaaaatctgctatggacagtaaacctacttaaagccaagttcatattaacatagtcaaataaagtaatcggaa |
41823092 |
T |
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| Q |
217 |
atatattttaaaatactaacgagctaattaataaataaatgagattaaacaatattttaagatttaacacgatatttagagaatatgattttattgttta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41823091 |
atatattttaaaatactaacgagctaattaataaataaatgagattaaacaatattttaagatttaacacgatatttagagagtatgattttattgttta |
41822992 |
T |
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| Q |
317 |
a--aaaagagagtatgattttatatgacaaaagaaacccattcaattttcttttgtatggtttaggttaggtcaaaaaccttatttattttcaactaaat |
414 |
Q |
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| T |
41822991 |
aaaaaaagagagtatgattttatatgacaaaagatacccattcaattttcttttgtatggtttaggttaggtcaaaaaccttatttattttcaactaaat |
41822892 |
T |
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| Q |
415 |
acataatcccatgaattgctttct |
438 |
Q |
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| T |
41822891 |
acataatcccatgaattgctttct |
41822868 |
T |
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