View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4518_low_3 (Length: 398)
Name: NF4518_low_3
Description: NF4518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4518_low_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 5 - 398
Target Start/End: Original strand, 26722621 - 26723017
Alignment:
| Q |
5 |
gaggatcacagacgcatgatgttgcatgttaagaaaataaagttaagtgcttaaattggtatagtttctgcccnnnnnnnnnn---ccttcctgcaattg |
101 |
Q |
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| T |
26722621 |
gaggaacacaaacgcatgatgttgcatgttaagaaaataaagtcaagtgcttaaattggtatagtttctgtcctttttttttttttccttcctgcaattg |
26722720 |
T |
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| Q |
102 |
gtatagtttttgttcctactccatttcaccatgatgttactaatttccaattttactatgagaagaaaccacatatgatgttatcttttgatttttggta |
201 |
Q |
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| T |
26722721 |
gtatagtttttgttcctactccatttcaccatgatgttactaatttccaattttactatgagaagaaaccacatatgaagttatcttttgatttttggta |
26722820 |
T |
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| Q |
202 |
agttaatttatgaacaaatatataaatattttggtgcatacgatgcatatactaacgatctaatttatttttgaagatgttggcatatgattttgtcaat |
301 |
Q |
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| T |
26722821 |
agttaatttatgaacaaatatataaatattttggtgcatacgatgcatatactcacgatctaatttatttttgaagatgttggcatatgattttgtcaat |
26722920 |
T |
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| Q |
302 |
aaatcttggacaagaaagctactgcagtagtcttggtcgatgtgtatggcaacatgtgtgggattgcacacttatttatgcatcaagaacatataac |
398 |
Q |
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| T |
26722921 |
caatcttggacaagaaagctactgcagtagtcttggtcgatgattatggcaacatgtgtgggattgcatacttatttatgcatcaagaccatataac |
26723017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 114 - 291
Target Start/End: Complemental strand, 26837902 - 26837731
Alignment:
| Q |
114 |
ttcctactccatttcaccatgatgttactaatttccaattttactatgagaagaaaccacatatgatgttatcttttgatttttggtaagttaatttatg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| | || ||||| || |
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| T |
26837902 |
ttcctactccatttcaccatgatgttactaatttccaattttactatgagaagaaag------tgatgttatctttgaatttttgatgagctaattcata |
26837809 |
T |
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| Q |
214 |
aacaaatatataaatattttggtgcatacgatgcatatactaacgatctaatttatttttgaagatgttggcatatga |
291 |
Q |
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| T |
26837808 |
aacaaatatataaatattttggtgcatacgatgcatattctcactttctaatttatttttgaagatgttggcttatga |
26837731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 7850924 - 7850978
Alignment:
| Q |
20 |
atgatgttgcatgttaagaaaataaagttaagtgcttaaattggtatagtttctg |
74 |
Q |
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| T |
7850924 |
atgatgttgcatgttaagaaaataaagttaagaacttaaaatggtatagtttctg |
7850978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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