View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4518_low_4 (Length: 396)
Name: NF4518_low_4
Description: NF4518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4518_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 4094635 - 4094475
Alignment:
| Q |
8 |
aacctgtgcaattaaatgtgggtggtagataatgatgacggcgaaaggacagaaaccaaatcgaaatctaaaatctaaagtcagtgtgatttcaacttac |
107 |
Q |
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| T |
4094635 |
aacccgtgcaattaaatgtggatggtagataatgatgacggcgaaaggacagaacccaaatcgaaatctaaaatctaaagtcagtgtgatttcaacttac |
4094536 |
T |
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| Q |
108 |
gaacttgacacaattaattcatatcagatcctccactctgtctgtctgtctcgtaagtttc |
168 |
Q |
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| T |
4094535 |
gaacttgacacaattaattcatatcagatcctccactctgtatgtctgtctcgtaagtttc |
4094475 |
T |
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Target: chr5; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 220 - 380
Target Start/End: Complemental strand, 4094409 - 4094246
Alignment:
| Q |
220 |
cactgcataacataa---atgaaactttgattcataattggacaatgcggtggtttcaattgagtacaagctccgaaagggaccaccggaacactcagaa |
316 |
Q |
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||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4094409 |
cactgcataacataattaatgaaactgtgattcataattggacaatgcggtggtttcaattgagtacaagctccgaaagggaccaccggaacactcagaa |
4094310 |
T |
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| Q |
317 |
tgcttctcgtgctatggtgtatctcaatgtatatgatcttactccaatcaataattatctttat |
380 |
Q |
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| T |
4094309 |
tacttctcgtgctatggtgtatctcaatgtatatgatcttactccaatcaataattatctttat |
4094246 |
T |
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