View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4518_low_5 (Length: 379)
Name: NF4518_low_5
Description: NF4518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4518_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 17 - 372
Target Start/End: Complemental strand, 47072848 - 47072493
Alignment:
| Q |
17 |
agtaagtactagttgcttctctagttaacttgtgtaatagtctttcaattcttataactattgtgtcttttgttttattgacaccaatccatgtaccatt |
116 |
Q |
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| T |
47072848 |
agtaagtactagttgcttctctagttaacttgtgtaatagtctttcaattcttataactattgtgtcttttgttttattgacaccaatccatgtaccatt |
47072749 |
T |
|
| Q |
117 |
aagttagcaggtggacaaatataatatttattactcttatatttttgctaacaatttttattcatttaattgaaccccattattgtgtttttgacaggtg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47072748 |
aagttagcaggtggacaaatataatatttattactcttatatttttgctaacaatttttattcatttaattgaaccccattattgtgtttttgacaggtg |
47072649 |
T |
|
| Q |
217 |
gacaaatctctgttgtgcaagctcttttggaggaactacctaatcaatttttgactttcatgagaagtagagatatcaaaccacttgtttcccagttctc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
47072648 |
gacaaatctctgttgtgcaagctcttttggaggaactacctaatcaatttttgactttcatgagaagtagagatatcaaaccacttgtttcccagttccc |
47072549 |
T |
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| Q |
317 |
tcatccatccactattctatagatattacaattagagacagccaacctttcttctc |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47072548 |
tcatccatccactattctatagatattacaattagagacagccaaccgttcttctc |
47072493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 194 - 302
Target Start/End: Complemental strand, 47054599 - 47054492
Alignment:
| Q |
194 |
cattattgtgtttttgacaggtggacaaatctctgttgtgcaagctcttttggaggaactacctaatcaatttttgactttcatgagaagtagagatatc |
293 |
Q |
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| T |
47054599 |
cattcttgtgtttttg-cagaaggacagatctctgttgtgcaagctcttttggaagaattacctgatcagtttttgtctttcatgcgaagtagaaatatc |
47054501 |
T |
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| Q |
294 |
aaaccactt |
302 |
Q |
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||||||||| |
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| T |
47054500 |
aaaccactt |
47054492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 372
Target Start/End: Complemental strand, 33598601 - 33598569
Alignment:
| Q |
340 |
tattacaattagagacagccaacctttcttctc |
372 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
33598601 |
tattacaattagagacagccaacctttcttctc |
33598569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 162 - 352
Target Start/End: Original strand, 18232465 - 18232655
Alignment:
| Q |
162 |
tgctaacaatttttattcatttaattgaaccccattattgtgtttttgacaggtggacaaatctctgttgtgcaagctcttttggaggaactacctaatc |
261 |
Q |
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|||||||||| |||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
18232465 |
tgctaacaatctttactcatttaattgaaccccattattgtatttttggcaggtggacaaatctctgttgtgcaagctcttttagaggaactacctagtc |
18232564 |
T |
|
| Q |
262 |
aatttttgactttcatgagaagtagagatatcaaaccacttgtttcccagttctctcatccatccactattctatagatattacaattaga |
352 |
Q |
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||||| || ||||||||||||||||||||||||||||||| ||||| || ||| ||||| || | |||||| |||||| ||||||||||| |
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| T |
18232565 |
aatttctggctttcatgagaagtagagatatcaaaccactcgtttcgcatttccctcatgcacgctctattcaatagattttacaattaga |
18232655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 121
Target Start/End: Original strand, 18232269 - 18232372
Alignment:
| Q |
17 |
agtaagtactagttgcttctctagtta-acttgtgtaatagtctttcaattcttataactattgtgtcttttgttttattgacaccaatccatgtaccat |
115 |
Q |
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||||||||||||| |||||||||||| |||||| || |||| ||||||||||||||||| ||| |||||| ||||||||||||| ||| |||||||||| |
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| T |
18232269 |
agtaagtactagtcgcttctctagtttgacttgt-tagtagtttttcaattcttataacttttgagtcttt-gttttattgacacaaattcatgtaccat |
18232366 |
T |
|
| Q |
116 |
taagtt |
121 |
Q |
| |
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||||| |
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|
| T |
18232367 |
caagtt |
18232372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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