View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4518_low_7 (Length: 366)
Name: NF4518_low_7
Description: NF4518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4518_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 14 - 348
Target Start/End: Original strand, 31633815 - 31634149
Alignment:
| Q |
14 |
atcaacaatgctctccaacataaaatagttaaccatttgagctccattcacactacaattaaactgaggtgaaaaactatctggtataggaaatggagtg |
113 |
Q |
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| T |
31633815 |
atcagcaacgctctccaacataaaataattaaccatttgagttccatttatactacagttaaactgcggggaaaagctatctggcataagaaatggggtg |
31633914 |
T |
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| Q |
114 |
taaggacaatcatagtagagtgtcaagttatgagaatccgaaccataatcgaagaaagtgcaatctaaagttgtgttcttaaggttggtgggacaaacat |
213 |
Q |
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| T |
31633915 |
tgaggacaatcatagtagagtgtcaaattatgagaatccgaaccataatcgaagaaagtgcaatctaatgttgtgtttttaaggctggtgggacaaacat |
31634014 |
T |
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| Q |
214 |
tgttccaataatcagttcttacaactttgagtctatgatcagaatcactgacttcaagaattctataactttgtgacataatggtaatgcttgcaaattc |
313 |
Q |
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| T |
31634015 |
tgttccaataatcagttctaacaactttgagtctatgatctgaatcactgacttcaagaattttataattttgtgacataatggtaatgcttgctaattc |
31634114 |
T |
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| Q |
314 |
atctttgcattgtagctcaaaagaagggtggccac |
348 |
Q |
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| T |
31634115 |
atctttgcattgtagctcaaaagaagggtggccac |
31634149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 186 - 335
Target Start/End: Original strand, 19991458 - 19991607
Alignment:
| Q |
186 |
gtgttcttaaggttggtgggacaaacattgttccaataatcagttcttacaactttgagtctatgatcagaatcactgacttcaagaattctataacttt |
285 |
Q |
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| T |
19991458 |
gtgttcttaaagttggtgggacaaatattattccattaatcggttcttacaactttgtgtctatgatcagagtcggtgacttcaagaattctataattct |
19991557 |
T |
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| Q |
286 |
gtgacataatggtaatgcttgcaaattcatctttgcattgtagctcaaaa |
335 |
Q |
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| T |
19991558 |
gtgacatcatggtaatgcttgcaaattcatctttgcattgtatctcaaaa |
19991607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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