View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4518_low_9 (Length: 337)
Name: NF4518_low_9
Description: NF4518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4518_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 43473102 - 43473419
Alignment:
| Q |
1 |
gagaacatgttgcttccaagaacaacaaatttgttaaagataaatccaatttgaagggcacaacttcaatatctagaaaacaaaggtcaatcctttctca |
100 |
Q |
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| T |
43473102 |
gagaaaatgttgcttccaagaacaacaaatttgttaaagataaatccaatttgaagggcacaacttcaatatctagaaaacaaaggtcaatcctttctca |
43473201 |
T |
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| Q |
101 |
gagcttttctttcccagccaaatcagcacgtgaagattctatgcataaaagcattgatggttgtcttgttaacacaaaagttaaacatgttcgagcttcc |
200 |
Q |
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| T |
43473202 |
gagcttttctttcccagccaaatcagcacgtaaagattctatgcataaaagcattgatggttgtcttgttaacacaaaagttaaacatgttcgagcttcc |
43473301 |
T |
|
| Q |
201 |
actcttcatcattcaagtaagtccacaaactctgaagggaaatcaaatgaggcgaaaacaaacgctgagggttgtaataagagtagtactttgatatcca |
300 |
Q |
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| T |
43473302 |
actcttcatcattcaagtaagtccacaaactctgaagggaaatcaaatgaggcgaaaacaaacgctgagggttgtaataagaggagtgctttgatatcca |
43473401 |
T |
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| Q |
301 |
tgcctggtttgaaacact |
318 |
Q |
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| T |
43473402 |
tgcctggtttgaaacact |
43473419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 283
Target Start/End: Complemental strand, 2081619 - 2081474
Alignment:
| Q |
137 |
ttctatgcataaaagcattgatggttgtcttgtt---aacacaaaagttaaacatgttcgagcttccactcttcatcattcaagtaagtccacaaactct |
233 |
Q |
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| T |
2081619 |
ttctatgcagaaaagcgttgatggttgtcttgttgttaagacaaagtttaaacatgtacaatcctctactcatcatcattcaagg----ccaaaaacttt |
2081524 |
T |
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| Q |
234 |
gaagggaaatcaaatgaggcgaaaacaaacgctgagggttgtaataagag |
283 |
Q |
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| T |
2081523 |
gaagggaaatcaaatgaagcaaaaacaagcactgaaggttgtaataagag |
2081474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 2081697 - 2081624
Alignment:
| Q |
45 |
tccaatttgaagggcacaacttcaatatctagaaaa-caaaggtcaatcctttctcagagcttttctttcccag |
117 |
Q |
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||||||||||| ||||||||||||| || ||||||| |||||| |||| | |||||||||||||||| |||||| |
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| T |
2081697 |
tccaatttgaaaggcacaacttcaacatatagaaaaacaaaggccaattcattctcagagcttttctgtcccag |
2081624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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