View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4519-Insertion-2 (Length: 883)
Name: NF4519-Insertion-2
Description: NF4519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4519-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 56 - 422
Target Start/End: Original strand, 32727056 - 32727423
Alignment:
| Q |
56 |
cagagacgactataatgtagatatacactttcatcctgtcgaccttcatcatcgcgtcattgccgactcgatggtgagatccacctatcctccgccagct |
155 |
Q |
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| T |
32727056 |
cagagacgactataatgtagatatacactttcatcctgtcgaccttcatcatcgcgtcattgccgactcgatggtgagatccacctatcctccgccaact |
32727155 |
T |
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| Q |
156 |
tcaagtgtgccagcgacgtcgttgatcg-aaaaatacataaatttattttttacattttaaacgtgagaaatagatttcgcacatacgcgcgtgcgtaca |
254 |
Q |
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| T |
32727156 |
tcaagtgtgccagaactgtcgttgatcggaaaaatacataaatttattttttacattttaaacgtgagaaatagatttcacacatacgcgcgtgcgtaca |
32727255 |
T |
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| Q |
255 |
catacatataagtttttcaacaaaaatcatattcatgcgttagataaggataagatgcaaacatgtctcaaaattaaaatgaataaatttgtcgttgact |
354 |
Q |
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| T |
32727256 |
cacacatataagtttttcaataaaaatcatattcatgcgttagataaggataagatgcaaacatgtctcaaaattaaaatgaataaatttgtcgttgact |
32727355 |
T |
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| Q |
355 |
atatataatggatcataaattttaattacatcaattgcatccacaaacaaatacacaatttcgatttg |
422 |
Q |
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| T |
32727356 |
atatataatggatcataaattttaattacatcaattgcatccacaaacaaatacacaatttcgatttg |
32727423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 8e-85
Query Start/End: Original strand, 662 - 853
Target Start/End: Original strand, 32727670 - 32727864
Alignment:
| Q |
662 |
accaaacacggtattagagacattgagaaagctttttccgttgacattatactacaagtatttgtggtgtccgggatattat---actacaagtannnnn |
758 |
Q |
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| T |
32727670 |
accaaacacggtattagagacattgagaaagctttttccgttgacattatactacaagtatttgtggtgtccgggatattattatactacaagtattttt |
32727769 |
T |
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| Q |
759 |
nnggttacaatactacaagtatttttgctaaaaggaaacatttagagacataattaatatttgacaataaagattattgcctaatctgaaaattc |
853 |
Q |
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| T |
32727770 |
ttggttacaatactacaagtatttttgctaaaaggaaacatttagagacataattaatatttgacaataaagattattgcctaatctgaaaattc |
32727864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 485 - 569
Target Start/End: Original strand, 32727483 - 32727567
Alignment:
| Q |
485 |
atttaagtgaaaaaatatctatccaataaatatttatgcacttatgaagagaagttgatatatgcatggttcccacattatttta |
569 |
Q |
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| T |
32727483 |
atttaagtgaaaaaatatttatccaataaatatttatgcacttatgaagagaatttgatatatgcatggatcccacattatttta |
32727567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 362 - 391
Target Start/End: Complemental strand, 48715783 - 48715754
Alignment:
| Q |
362 |
atggatcataaattttaattacatcaattg |
391 |
Q |
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| T |
48715783 |
atggatcataaattttaattacatcaattg |
48715754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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