View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4519-Insertion-3 (Length: 627)

Name: NF4519-Insertion-3
Description: NF4519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4519-Insertion-3
NF4519-Insertion-3
[»] chr4 (9 HSPs)
chr4 (7-627)||(25015936-25016556)
chr4 (354-598)||(25037249-25037491)
chr4 (66-189)||(25037637-25037760)
chr4 (438-531)||(4623315-4623408)
chr4 (438-538)||(25044877-25044977)
chr4 (82-180)||(4599085-4599183)
chr4 (438-514)||(25002232-25002308)
chr4 (82-180)||(4623512-4623610)
chr4 (438-538)||(24984681-24984781)
[»] chr2 (3 HSPs)
chr2 (83-183)||(18805377-18805477)
chr2 (441-533)||(18805598-18805690)
chr2 (420-538)||(42165025-42165143)
[»] chr6 (1 HSPs)
chr6 (423-537)||(29408159-29408273)


Alignment Details
Target: chr4 (Bit Score: 584; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 7 - 627
Target Start/End: Complemental strand, 25016556 - 25015936
Alignment:
Q  7 attaaatactttattctacgatttgtttgtttgataaataactaacaaaagaaatttacgtacaggctgcttcaccttggctatttgtttatccaagggg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25016556 attaaatactttattctacgatttgtttgtttgataaataactaacaaaagaaatttacgtacaggctgcttcaccttggctatttgtttatccaagggg 25016457  T
Q  107 gattcaggaactactgttgcacacaaagacaaagtataataatccattgatttacataacagaaaatggtaatactttaattatttttcttttaacttgc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25016456 gattcaggaactactgttgcacacaaagacaaagtataataatccattgatttacataacagaaaatggtaatactttaattatttttcttttaacttgc 25016357  T
Q  207 gatataagtatgcattatttttaacataaaattcaagttactataaagcacaagttagtttgcatatcaaccttttatatactaaatctacttgatcttt 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25016356 gatataagtatgcattatttttaacataaaattcaagttactataaaggacaagttagtttgcatatcaaccttttatatactaaatctacttgatcttt 25016257  T
Q  307 gagaactcctaatcttctcttattctcaaatctcaatacattgtttacttctttttcttcctaatcaaatcaaatttctaataaactatagttttcaaat 406  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25016256 gagaattcctaatcttctcttattctcaaatctcaatacattgtttacttctttttcttcctaatcaaatcaaatttctaacaaactatagttttcaaat 25016157  T
Q  407 tttaatattaaaattttaggtatggacgagctcaatgatccaacactatcacttgaagaagcgctaatggatacttacagaattgattacttttatcgcc 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25016156 tttaatattaaaattttaggtatggacgagctcaatgatccaacactatcacttgaagaagcgctaatggatacttacagaattgattacttttatcgcc 25016057  T
Q  507 atctttatcatgtttcatctgcaatcaagtaaatagcaccatctctctacttatttgatattgaatcacattattttcacactctaaccttagtttccnn 606  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  25016056 atctttattatgtttcatctgcaatcaagtaaatagcaccatctctctacttatttgatattgaatcacattattttcacactctaaccttagtttcctt 25015957  T
Q  607 nnnnnaatctctgatatatta 627  Q
         ||||||||||||||||    
T  25015956 tttttaatctctgatatatta 25015936  T

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Target: chr4; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 354 - 598
Target Start/End: Complemental strand, 25037491 - 25037249
Alignment:
Q  354 cttctttttcttcctaatcaaatcaaatttctaataaactatagttttcaaattttaatattaaaattttaggtatggacgagctcaatgatccaacact 453  Q
    ||||||||||||| || ||||||||| | | |||||||||||| |||| ||||||||||| | |||||| ||||||||||||| | ||||||||||| ||    
T  25037491 cttctttttcttcttagtcaaatcaattgtataataaactataattttaaaattttaataattaaattt-aggtatggacgagttaaatgatccaacgct 25037393  T
Q  454 atcacttgaagaagcgctaatggatacttacagaattgattacttttatcgccatctttatcatgtttcatctgcaatcaagtaaatagcaccatctctc 553  Q
    |||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||| || |||||||||||||||||||||||| | ||||||||    
T  25037392 atcacttgaagaggcgctcatggatacttacagaatcgattacttttatcgacatctttattatatttcatctgcaatcaagtaaatag-aacatctctc 25037294  T
Q  554 tacttatttgatattgaatcacattattttcacactctaacctta 598  Q
    | ||||||| |||||||||||||||||||||||||| || |||||    
T  25037293 ttcttatttcatattgaatcacattattttcacactttatcctta 25037249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 66 - 189
Target Start/End: Complemental strand, 25037760 - 25037637
Alignment:
Q  66 gtacaggctgcttcaccttggctatttgtttatccaagggggattcaggaactactgttgcacacaaagacaaagtataataatccattgatttacataa 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| || ||  ||||||||||||    
T  25037760 gtacaggctgcttcaccttggctatttgtttatccaagggggattcaagaactactgttgtacacaaagacaaagtataacaaccctgtgatttacataa 25037661  T
Q  166 cagaaaatggtaatactttaatta 189  Q
    | |||||||||| |||||||||||    
T  25037660 ccgaaaatggtactactttaatta 25037637  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 438 - 531
Target Start/End: Complemental strand, 4623408 - 4623315
Alignment:
Q  438 tcaatgatccaacactatcacttgaagaagcgctaatggatacttacagaattgattacttttatcgccatctttatcatgtttcatctgcaat 531  Q
    ||||||||||||| |||||||| ||||| || || ||||||||| |||||||||||||||||||||| ||||| ||| || ||| |||||||||    
T  4623408 tcaatgatccaacgctatcactggaagaggcactcatggatactaacagaattgattacttttatcgtcatctatattatcttttatctgcaat 4623315  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 438 - 538
Target Start/End: Complemental strand, 25044977 - 25044877
Alignment:
Q  438 tcaatgatccaacactatcacttgaagaagcgctaatggatacttacagaattgattacttttatcgccatctttatcatgtttcatctgcaatcaagta 537  Q
    |||||||||||||||| || ||||||||| | || || ||||||  ||||||||||||||||||||| ||||||||| || ||  | |||||||||||||    
T  25044977 tcaatgatccaacactgtcgcttgaagaatcccttatagatactctcagaattgattacttttatcgtcatctttattatcttcaaactgcaatcaagta 25044878  T
Q  538 a 538  Q
    |    
T  25044877 a 25044877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 82 - 180
Target Start/End: Complemental strand, 4599183 - 4599085
Alignment:
Q  82 cttggctatttgtttatccaagggggattcaggaactactgttgcacacaaagacaaagtataataatccattgatttacataacagaaaatggtaata 180  Q
    ||||| ||| ||||| ||||| |||||||||||| ||||||||| ||||||||  ||||||||| |||||   ||||  ||||||||||||||||||||    
T  4599183 cttggttatatgtttgtccaaaggggattcaggacctactgttgtacacaaaggaaaagtataacaatcctacgattatcataacagaaaatggtaata 4599085  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 438 - 514
Target Start/End: Original strand, 25002232 - 25002308
Alignment:
Q  438 tcaatgatccaacactatcacttgaagaagcgctaatggatacttacagaattgattacttttatcgccatctttat 514  Q
    |||| ||||||||| |||||||||||||| | ||  | |||||| |||||||||||||||||||||| |||||||||    
T  25002232 tcaacgatccaacattatcacttgaagaatcccttttagatactgacagaattgattacttttatcgtcatctttat 25002308  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 82 - 180
Target Start/End: Complemental strand, 4623610 - 4623512
Alignment:
Q  82 cttggctatttgtttatccaagggggattcaggaactactgttgcacacaaagacaaagtataataatccattgatttacataacagaaaatggtaata 180  Q
    ||||| ||| ||||| ||||| ||| |||||||| ||||||||| ||||||||  ||||||||| |||||   ||||  ||||||||||||||||||||    
T  4623610 cttggttatatgtttgtccaaagggtattcaggacctactgttgtacacaaaggaaaagtataacaatcctacgattatcataacagaaaatggtaata 4623512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 438 - 538
Target Start/End: Complemental strand, 24984781 - 24984681
Alignment:
Q  438 tcaatgatccaacactatcacttgaagaagcgctaatggatacttacagaattgattacttttatcgccatctttatcatgtttcatctgcaatcaagta 537  Q
    |||| ||||| | ||| |||||||||||| | ||  | |||||||| ||||| |||||||||||||| ||||||||| |||||  | ||||||||| |||    
T  24984781 tcaacgatcctaaactgtcacttgaagaatcccttttagatacttatagaatcgattacttttatcgtcatctttattatgttcaagctgcaatcaggta 24984682  T
Q  538 a 538  Q
    |    
T  24984681 a 24984681  T

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Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 83 - 183
Target Start/End: Original strand, 18805377 - 18805477
Alignment:
Q  83 ttggctatttgtttatccaagggggattcaggaactactgttgcacacaaagacaaagtataataatccattgatttacataacagaaaatggtaatact 182  Q
    |||||||| ||||||||||| ||||||||| || ||||||||| ||| ||||| ||||||||| |||||  | |||||||||||||||||||||||||||    
T  18805377 ttggctatatgtttatccaaaggggattcaagagctactgttgtacataaagaaaaagtataacaatcctgttatttacataacagaaaatggtaatact 18805476  T
Q  183 t 183  Q
    |    
T  18805477 t 18805477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 441 - 533
Target Start/End: Original strand, 18805598 - 18805690
Alignment:
Q  441 atgatccaacactatcacttgaagaagcgctaatggatacttacagaattgattacttttatcgccatctttatcatgtttcatctgcaatca 533  Q
    |||||||||| |||||||| |||||  |||| ||||||| ||| ||||||||||||  |||||| ||||||||| | ||| ||||||||||||    
T  18805598 atgatccaaccctatcactcgaagagacgctcatggatatttatagaattgattaccattatcgtcatctttattacgttgcatctgcaatca 18805690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 538
Target Start/End: Complemental strand, 42165143 - 42165025
Alignment:
Q  420 ttttaggtatggacgagctcaatgatccaacactatcacttgaagaagcgctaatggatacttacagaattgattacttttatcgccatctttatcatgt 519  Q
    |||||||||| || ||| |||||||||||||| ||||||| || ||||| || ||||| ||||| |||||||| || | | |||| ||||| | | || |    
T  42165143 ttttaggtattgatgagttcaatgatccaacattatcactagaggaagctcttatggacacttatagaattgactattatcatcgtcatctcttttatat 42165044  T
Q  520 ttcatctgcaatcaagtaa 538  Q
    |  ||||||||||||||||    
T  42165043 tcgatctgcaatcaagtaa 42165025  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 423 - 537
Target Start/End: Original strand, 29408159 - 29408273
Alignment:
Q  423 taggtatggacgagctcaatgatccaacactatcacttgaagaagcgctaatggatacttacagaattgattacttttatcgccatctttatcatgtttc 522  Q
    ||||||| || |||||||||||||||||||| |||||||||||||| ||    |||||   ||| |||||||||||||||   ||||| ||| || ||      
T  29408159 taggtatagatgagctcaatgatccaacactctcacttgaagaagcccttgcagatacagccaggattgattacttttataatcatctatattatcttaa 29408258  T
Q  523 atctgcaatcaagta 537  Q
    |||||||||||||||    
T  29408259 atctgcaatcaagta 29408273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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