View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4519-Insertion-6 (Length: 513)
Name: NF4519-Insertion-6
Description: NF4519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4519-Insertion-6 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 7 - 513
Target Start/End: Complemental strand, 27641020 - 27640514
Alignment:
| Q |
7 |
acatataaatcttgatcaaattcagatctcaccaacctagcatgaacctgcctgccatgatcaaggctagctaaactggcacacacagaaagaacactga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27641020 |
acatataaatcttgatcaaattcagatctcaccaacctagcatgaacctgcctgccatgatcaaggctagctaaactggcacacacagaaagaacactga |
27640921 |
T |
|
| Q |
107 |
tcatcgaagggaaattcaatgcaaccccttccctttgcatcctagcaaacaaatccaaagcttccaagtccaaccctttcctctcacacaccttaatcat |
206 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27640920 |
tcatcgaagggaaattcaacgcaaccccttccctttgcatcctagcaaacaaacccaaagcttccaagtccaaccctttcctctcaaacaccttaatcat |
27640821 |
T |
|
| Q |
207 |
agcattccaagttccctcatccctttccttcattccctcaaacatcatcctagctctatgcatctccccagcaagtccaaactgtaagatcatctcatta |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27640820 |
agcattccaagttccctcatccctttccttcattccctcaaacatcatcctagctctatgcatctccccagcaagtccaaactgtaagatcatctcatta |
27640721 |
T |
|
| Q |
307 |
caagcaacaaaccacttcaccggcatcgcttcaaaaagctcaaaagcctccttcatcctccgactctgagtataccccataagcatagccgtccaagaca |
406 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27640720 |
caagcaacaatccacttcaccggcatcgcttcaaaaagctcaaaagcctccttcatcctcccactctgagtataccccataagcatagccgtccaagaca |
27640621 |
T |
|
| Q |
407 |
cctcatttctctccggcatcacctcaaaaagcttccttgcaacatcaaccctcccattctttgcatacccagaaaccatagtagtccaagtaaacacatt |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27640620 |
cctcatttctctccggcatcacctcaaaaagcttccttgcaacatcaaccctcccattctttgcatacccagaaaccatagtagtccaagtaaacacatt |
27640521 |
T |
|
| Q |
507 |
cctcacc |
513 |
Q |
| |
|
||||||| |
|
|
| T |
27640520 |
cctcacc |
27640514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 500
Target Start/End: Original strand, 1032039 - 1032073
Alignment:
| Q |
466 |
tttgcatacccagaaaccatagtagtccaagtaaa |
500 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1032039 |
tttgcatacccagcaaccatagtagtccaagtaaa |
1032073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University