View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4519-Insertion-7 (Length: 271)
Name: NF4519-Insertion-7
Description: NF4519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4519-Insertion-7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 8 - 229
Target Start/End: Complemental strand, 53089349 - 53089128
Alignment:
| Q |
8 |
aaaagttcaagatttgatgaagaattaatgatggagtttcaaaagaaaaggtatgtgacgttcgcgaatccaccgtctgtttctcatgtgatgttacctc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53089349 |
aaaagttcaagatttgatgaagaattaatgatggagtttcaaaagaaaaggtatgtgacgttcgcgaatccaccgtctgtttctcatgtgatgttacctc |
53089250 |
T |
|
| Q |
108 |
aaggtgttgagaagttggaaaggcacccttctcttaggaagaagaagaagaagtcattgattccacttatcggaggtattttttcaaggaaaaagggaac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
53089249 |
aaggtgttgagaagttggaaaggcacccttctcttaggaagaagaagaagaagtcattgattccacttataggaggtattttttcaaggaaaaagggaac |
53089150 |
T |
|
| Q |
208 |
tagccaagaagttccatgatga |
229 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
53089149 |
tagccaagaagttccatgatga |
53089128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 53089114 - 53089069
Alignment:
| Q |
226 |
atgaattttagcgagtataagtatgctatatgcattacattaccag |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
53089114 |
atgaattttagcgagtataagtatgctatatgcatcacattaccag |
53089069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 8 - 231
Target Start/End: Complemental strand, 14334058 - 14333826
Alignment:
| Q |
8 |
aaaagttcaagatttgatgaagaattaatgatggagtttcaaaagaaaaggtatgtgacgttcgcgaatccaccgtctgtttctcatgtgatgttacctc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
14334058 |
aaaagttcaagatttgatgaagaattaatgatggaatttcaaaagaaaaggtatgtgacgttcgcgaatccaccgtcagtttctcatgtcatgttacctc |
14333959 |
T |
|
| Q |
108 |
aaggt---------gttgagaagttggaaaggcacccttctcttaggaagaagaagaagaagtcattgattccacttatcggaggtattttttcaaggaa |
198 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||| |
|
|
| T |
14333958 |
aaggtcatcaaggtgttgagaagttggaaaggcacccttctcttaggaagaagaagaagaagtcattgattccacttattggaggcatattttctaggaa |
14333859 |
T |
|
| Q |
199 |
aaagggaactagccaagaagttccatgatgaat |
231 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
14333858 |
aaagggaactaaccaagaagttccatgatgaat |
14333826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 14333814 - 14333769
Alignment:
| Q |
226 |
atgaattttagcgagtataagtatgctatatgcattacattaccag |
271 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14333814 |
atgaattttagcgagtataagtatgcttcatgcattacattaccag |
14333769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University