View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4519-Insertion-8 (Length: 227)
Name: NF4519-Insertion-8
Description: NF4519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4519-Insertion-8 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 8 - 215
Target Start/End: Complemental strand, 18698317 - 18698113
Alignment:
| Q |
8 |
ttggaaagatggttaagtctggatttaggttgtttgagcatgttatttgaggaatacacggggttgttgatcaatcttggttctgcagaattattattcc |
107 |
Q |
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| T |
18698317 |
ttggaaagatggttaagtctggatttaagttgtttgagcatgttatttgaggaatgcacgggtttgttgatcaatcttggttctgcagaattattattca |
18698218 |
T |
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| Q |
108 |
caacatggaaataattagttattttgtttgcaccattatgaaatacctaggataagttgtttacataagcttttgtcgttgtttaggtaggtacatttta |
207 |
Q |
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| T |
18698217 |
caacatggaaataattagttgttttgttttcaccattatgaaatacataggataagttgtttacgtaagcttttgtcgtggtttaggt---tacatttta |
18698121 |
T |
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| Q |
208 |
tagttgtt |
215 |
Q |
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|||||||| |
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| T |
18698120 |
tagttgtt |
18698113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 175
Target Start/End: Complemental strand, 40161330 - 40161168
Alignment:
| Q |
13 |
aagatggttaagtctggatttaggttgtttgagcatgttatttgaggaatacacggggttgttgatcaatcttggttctgcagaattattattcccaaca |
112 |
Q |
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| T |
40161330 |
aagatggttgattcttgatttaagtggtttgggcatgttatttgaggaatacatttgattgttgttcaatcatggttctgctgaatcattattcccaaca |
40161231 |
T |
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| Q |
113 |
tggaaataattagttattttgtttgcaccattatgaaatacctaggataagttgtttacataa |
175 |
Q |
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| T |
40161230 |
tggaaatagtctgttattttatttgcacctatgtcagaggcctaggataagttgtttacataa |
40161168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 30 - 215
Target Start/End: Complemental strand, 33946908 - 33946727
Alignment:
| Q |
30 |
atttaggttgtttgagcatgttatttgaggaatacacggggttgttgatcaatcttggttctgcagaattattattcccaacatgg-aaataattagtta |
128 |
Q |
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| T |
33946908 |
attttggtggttttagcatgttatttgaggaatacattggtttgttg-tcaatcttggtacgtcagaatcattattcccaacatggaaaataatgagtta |
33946810 |
T |
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| Q |
129 |
ttttgtttgcaccattatgaaatacctaggataagttgtttacataagcttttgtcgttgtttaggtaggtacattttatagttgtt |
215 |
Q |
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| T |
33946809 |
ttttgtttgtaccattat----cacctagaatatgttgtttacataagcacttgttgtggtttaggtggggagattttatagctgtt |
33946727 |
T |
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