View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4519_high_17 (Length: 272)
Name: NF4519_high_17
Description: NF4519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4519_high_17 |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 2083802 - 2083549
Alignment:
| Q |
19 |
gatactgcatcacactaaatggaaatgttctcatctgtctcatagttgctaagtggaaactccttttgcatcatttttcttcttaccattgtaaattgta |
118 |
Q |
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| T |
2083802 |
gatactgcatcacactaaatggaaatgttctcatctgtctcatagttgctaagtggaaactccttttgcatcatttttcttcttaccattgtaaattgta |
2083703 |
T |
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| Q |
119 |
tttatcccatcaatgaatctaaattatccaataattattgtgatatgataagtttgtatcttttgtcgtagtggaatggatttcaagtgatccaactttc |
218 |
Q |
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| T |
2083702 |
tttatcccatcaatgaatctaaattatccaataattattgtgatatgataagtttgtatcttttgtcgtagtggaatggatttcaagtgatccaactttc |
2083603 |
T |
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| Q |
219 |
atgtttatgttactttagttttgtgaatgaatttcatgaagcacttgacattgc |
272 |
Q |
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| T |
2083602 |
atgtttatgttactttagttttgtgaatgaatttcatgaagcacttgacattgc |
2083549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 9670612 - 9670543
Alignment:
| Q |
203 |
aagtgatccaactttcatgtttatgttactttagttttgtgaatgaatttcatgaagcacttgacattgc |
272 |
Q |
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| T |
9670612 |
aagtgatccaactttcatgtttatgctacattagtcttgtgaatgaatttcatgaagcacttgacattgc |
9670543 |
T |
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