View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4519_high_18 (Length: 268)

Name: NF4519_high_18
Description: NF4519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4519_high_18
NF4519_high_18
[»] chr7 (3 HSPs)
chr7 (19-231)||(5375539-5375751)
chr7 (73-225)||(5369285-5369437)
chr7 (230-262)||(8094395-8094427)
[»] chr3 (5 HSPs)
chr3 (234-266)||(22667488-22667520)
chr3 (234-266)||(22724127-22724159)
chr3 (234-263)||(27294434-27294463)
chr3 (230-263)||(45590739-45590772)
chr3 (229-265)||(49605799-49605835)
[»] chr8 (5 HSPs)
chr8 (233-268)||(14926934-14926969)
chr8 (233-262)||(12833449-12833478)
chr8 (235-263)||(3024718-3024746)
chr8 (230-262)||(34770957-34770989)
chr8 (234-266)||(43908653-43908685)
[»] chr5 (2 HSPs)
chr5 (234-268)||(14959837-14959871)
chr5 (234-266)||(1084092-1084124)
[»] chr1 (2 HSPs)
chr1 (233-263)||(43371843-43371873)
chr1 (234-266)||(4868484-4868516)
[»] chr6 (1 HSPs)
chr6 (230-263)||(2460100-2460133)
[»] chr4 (3 HSPs)
chr4 (230-263)||(27123301-27123334)
chr4 (234-266)||(2852450-2852482)
chr4 (235-263)||(4071966-4071994)
[»] chr2 (2 HSPs)
chr2 (230-263)||(11513984-11514017)
chr2 (234-266)||(6547259-6547291)


Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 5375751 - 5375539
Alignment:
Q  19 agtgccaactgcactgagatgataactgatataactaaagcaataagagttgaagatgttatgagcactggcattccaaactcgaactattccatcatca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5375751 agtgccaactgcactgagatgataactgatataactaaagcaataagagttgaagatgttatgagcactggcattccaaactcgaactattccatcatca 5375652  T
Q  119 gatccagatattaaaaagttctcggcggcactatatgctaagaaagtaactgacctgctgttagaatgagaaagttaattagttaaattacactacacag 218  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5375651 gatccagatattaaaaagttctcagcggcactatatgctaagaaagtaactgacctgctgttagaatgagaaagttaattagttaaattacactacacag 5375552  T
Q  219 cttgaattaatct 231  Q
    |||||||||||||    
T  5375551 cttgaattaatct 5375539  T

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Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 73 - 225
Target Start/End: Original strand, 5369285 - 5369437
Alignment:
Q  73 gatgttatgagcactggcattccaaactcgaactattccatcatcagatccagatattaaaaagttctcggcggcactatatgctaagaaagtaactgac 172  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |    
T  5369285 gatgttatgagtactggcattccaaactcgaacaattccatcatcagatccagatattaaaaaattctcggcggcactatatgctaagcaagtaactgcc 5369384  T
Q  173 ctgctgttagaatgagaaagttaattagttaaattacactacacagcttgaat 225  Q
     |||||| |||||||||||||||| ||||||||| ||| ||||||||||||||    
T  5369385 ttgctgtaagaatgagaaagttaaatagttaaatgacattacacagcttgaat 5369437  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 262
Target Start/End: Complemental strand, 8094427 - 8094395
Alignment:
Q  230 ctagcataagcacttgtgagactgtttgagaga 262  Q
    ||||||||||||||||||||||| |||||||||    
T  8094427 ctagcataagcacttgtgagactatttgagaga 8094395  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 234 - 266
Target Start/End: Complemental strand, 22667520 - 22667488
Alignment:
Q  234 cataagcacttgtgagactgtttgagagagttt 266  Q
    |||||||||||||||||||||||||||||||||    
T  22667520 cataagcacttgtgagactgtttgagagagttt 22667488  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 234 - 266
Target Start/End: Complemental strand, 22724159 - 22724127
Alignment:
Q  234 cataagcacttgtgagactgtttgagagagttt 266  Q
    |||||||||||||||||||||||||||||||||    
T  22724159 cataagcacttgtgagactgtttgagagagttt 22724127  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 263
Target Start/End: Complemental strand, 27294463 - 27294434
Alignment:
Q  234 cataagcacttgtgagactgtttgagagag 263  Q
    ||||||||||||||||||||||||||||||    
T  27294463 cataagcacttgtgagactgtttgagagag 27294434  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 230 - 263
Target Start/End: Complemental strand, 45590772 - 45590739
Alignment:
Q  230 ctagcataagcacttgtgagactgtttgagagag 263  Q
    |||||||||||||||||||||||||||| |||||    
T  45590772 ctagcataagcacttgtgagactgtttgggagag 45590739  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 49605799 - 49605835
Alignment:
Q  229 tctagcataagcacttgtgagactgtttgagagagtt 265  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  49605799 tctagcataagtacttgtgagagtgtttgagagagtt 49605835  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 268
Target Start/End: Original strand, 14926934 - 14926969
Alignment:
Q  233 gcataagcacttgtgagactgtttgagagagtttgt 268  Q
    ||||||||||||||||||||||||||||||| ||||    
T  14926934 gcataagcacttgtgagactgtttgagagagcttgt 14926969  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 233 - 262
Target Start/End: Complemental strand, 12833478 - 12833449
Alignment:
Q  233 gcataagcacttgtgagactgtttgagaga 262  Q
    ||||||||||||||||||||||||||||||    
T  12833478 gcataagcacttgtgagactgtttgagaga 12833449  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 263
Target Start/End: Complemental strand, 3024746 - 3024718
Alignment:
Q  235 ataagcacttgtgagactgtttgagagag 263  Q
    |||||||||||||||||||||||||||||    
T  3024746 ataagcacttgtgagactgtttgagagag 3024718  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 262
Target Start/End: Complemental strand, 34770989 - 34770957
Alignment:
Q  230 ctagcataagcacttgtgagactgtttgagaga 262  Q
    ||||||||||||||||||| |||||||||||||    
T  34770989 ctagcataagcacttgtgaaactgtttgagaga 34770957  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 266
Target Start/End: Original strand, 43908653 - 43908685
Alignment:
Q  234 cataagcacttgtgagactgtttgagagagttt 266  Q
    ||||||||||||||| |||||||||||||||||    
T  43908653 cataagcacttgtgaaactgtttgagagagttt 43908685  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 268
Target Start/End: Complemental strand, 14959871 - 14959837
Alignment:
Q  234 cataagcacttgtgagactgtttgagagagtttgt 268  Q
    |||||||||||||| ||||||||||||||||||||    
T  14959871 cataagcacttgtgggactgtttgagagagtttgt 14959837  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 266
Target Start/End: Original strand, 1084092 - 1084124
Alignment:
Q  234 cataagcacttgtgagactgtttgagagagttt 266  Q
    ||||||||||||||| |||||||||||||||||    
T  1084092 cataagcacttgtgaaactgtttgagagagttt 1084124  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 43371843 - 43371873
Alignment:
Q  233 gcataagcacttgtgagactgtttgagagag 263  Q
    |||||||||||||||||||||||||||||||    
T  43371843 gcataagcacttgtgagactgtttgagagag 43371873  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 266
Target Start/End: Complemental strand, 4868516 - 4868484
Alignment:
Q  234 cataagcacttgtgagactgtttgagagagttt 266  Q
    |||| ||||||||||||||||||||||||||||    
T  4868516 cataggcacttgtgagactgtttgagagagttt 4868484  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 230 - 263
Target Start/End: Original strand, 2460100 - 2460133
Alignment:
Q  230 ctagcataagcacttgtgagactgtttgagagag 263  Q
    |||||||||| |||||||||||||||||||||||    
T  2460100 ctagcataagtacttgtgagactgtttgagagag 2460133  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 230 - 263
Target Start/End: Original strand, 27123301 - 27123334
Alignment:
Q  230 ctagcataagcacttgtgagactgtttgagagag 263  Q
    |||||||||| |||||||||||||||||||||||    
T  27123301 ctagcataagtacttgtgagactgtttgagagag 27123334  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 266
Target Start/End: Complemental strand, 2852482 - 2852450
Alignment:
Q  234 cataagcacttgtgagactgtttgagagagttt 266  Q
    ||||||||||||||| |||||||||||||||||    
T  2852482 cataagcacttgtgacactgtttgagagagttt 2852450  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 263
Target Start/End: Complemental strand, 4071994 - 4071966
Alignment:
Q  235 ataagcacttgtgagactgtttgagagag 263  Q
    |||||||||||||||||||||||||||||    
T  4071994 ataagcacttgtgagactgtttgagagag 4071966  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 230 - 263
Target Start/End: Complemental strand, 11514017 - 11513984
Alignment:
Q  230 ctagcataagcacttgtgagactgtttgagagag 263  Q
    ||||||||||||||||||||||||||| ||||||    
T  11514017 ctagcataagcacttgtgagactgttttagagag 11513984  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 266
Target Start/End: Complemental strand, 6547291 - 6547259
Alignment:
Q  234 cataagcacttgtgagactgtttgagagagttt 266  Q
    |||||||||||||||||||||||| ||||||||    
T  6547291 cataagcacttgtgagactgtttgtgagagttt 6547259  T

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