View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4519_high_21 (Length: 251)
Name: NF4519_high_21
Description: NF4519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4519_high_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 34 - 239
Target Start/End: Complemental strand, 5374850 - 5374645
Alignment:
| Q |
34 |
aaagattttgctttatcaatttcattttgactatctactctcttcatattttgtaaaattgttgtttatttcaattgattaaaagcaacacataatagaa |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5374850 |
aaagattttgctttatcaatttcattttgactatctactctcttcatattttgtaaaattgttgtttatttcaattgattaaaagcaacacataatagaa |
5374751 |
T |
|
| Q |
134 |
caaaataaatatagaatttgaatgtactaaatattgtgcacaagtatttgaatcaaatgtctttgtcgaatctaacccgaaaactgagaattgacggtga |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5374750 |
caaaataaatatagaatttgaatgtactaaatattgtgcacaagtatttgaatcaaatgtctttgtcgaatctaacccgaaaactgagaattgacggtga |
5374651 |
T |
|
| Q |
234 |
gaccta |
239 |
Q |
| |
|
| |||| |
|
|
| T |
5374650 |
ggccta |
5374645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 33 - 195
Target Start/End: Complemental strand, 5393078 - 5392916
Alignment:
| Q |
33 |
aaaagattttgctttatcaatttcattttgactatctactctcttcatattttgtaa-aattgttgtttatttcaattgattaaaagcaacacataatag |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||| | | |||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
5393078 |
aaaagattttgctttatcaatttcattttgattatctactctcttcatatttttttagaattgttgtttatttcaattgattgaaagcaatgcataatat |
5392979 |
T |
|
| Q |
132 |
aacaaaataaatatagaatttgaatgtactaaatattgtgcacaagtatttgaatcaaatgtct |
195 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
5392978 |
aacaaaataaatatagaatttgaatgta-aaaatattgtgcacaagtatttgaataaaatgtct |
5392916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 73
Target Start/End: Original strand, 5354617 - 5354656
Alignment:
| Q |
34 |
aaagattttgctttatcaatttcattttgactatctactc |
73 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5354617 |
aaagattttgctttatcaatttcattttgacaatctactc |
5354656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 5375376 - 5375341
Alignment:
| Q |
1 |
ataagaagtcagaaacaagaactgtgaattggaaaa |
36 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
5375376 |
ataagaagtcagaaacaagaactgtgaattggaaaa |
5375341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 216
Target Start/End: Original strand, 5354681 - 5354735
Alignment:
| Q |
162 |
aaatattgtgcacaagtatttgaatcaaatgtctttgtcgaatctaacccgaaaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||| |||| ||||| ||||| |
|
|
| T |
5354681 |
aaatattgtgcacaagtatttgaatcgtatgcctttgttgaatataacctgaaaa |
5354735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University