View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4519_high_23 (Length: 226)

Name: NF4519_high_23
Description: NF4519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4519_high_23
NF4519_high_23
[»] chr3 (7 HSPs)
chr3 (5-217)||(10893029-10893241)
chr3 (5-189)||(8865444-8865628)
chr3 (5-189)||(11127129-11127314)
chr3 (5-157)||(11156004-11156158)
chr3 (5-157)||(11144826-11144983)
chr3 (189-217)||(8865360-8865388)
chr3 (189-217)||(11127370-11127398)


Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 5 - 217
Target Start/End: Complemental strand, 10893241 - 10893029
Alignment:
Q  5 caagcaacctacacaacaagaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgaggaagcgaaagatatacaac 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10893241 caagcaacctacacaacaagaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgaggaagcgaaagatatacaac 10893142  T
Q  105 cacataataaaattatttatactgaatatgtaataaaatgaatgttacaacacagcaagtactattacgttttataaaatctagagcagtttatttagaa 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10893141 cacataataaaattatttatactgaatatgtaataaaatgaatgttacaacacagcaagtactattacgttttataaaatctagagcagtttatttagaa 10893042  T
Q  205 ctttgaaaattga 217  Q
    |||||||||||||    
T  10893041 ctttgaaaattga 10893029  T

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Target: chr3; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 5 - 189
Target Start/End: Complemental strand, 8865628 - 8865444
Alignment:
Q  5 caagcaacctacacaacaagaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgaggaagcgaaagatatacaac 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8865628 caagcaacctacacaacaagaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgaggaagcgaaagatatacaac 8865529  T
Q  105 cacataataaaattatttatactgaatatgtaataaaatgaatgttacaacacagcaagtactattacgttttataaaatctaga 189  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8865528 cacataataaaattatttataccaaatatgtaataaaatgaatgttacaacacagcaagtactattacgttttataaaatctaga 8865444  T

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Target: chr3; HSP #3
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 5 - 189
Target Start/End: Original strand, 11127129 - 11127314
Alignment:
Q  5 caagcaacctacacaacaagaa-gcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgaggaagcgaaagatatacaa 103  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11127129 caagcaacctacacaacaagaaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgatgaagcgaaagatatacaa 11127228  T
Q  104 ccacataataaaattatttatactgaatatgtaataaaatgaatgttacaacacagcaagtactattacgttttataaaatctaga 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11127229 ccacataataaaattatttatactgaatatgtaataaaatgaatgttacaacacagcaagtactattacgttttataaaatctaga 11127314  T

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Target: chr3; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 5 - 157
Target Start/End: Original strand, 11156004 - 11156158
Alignment:
Q  5 caagcaacctacacaacaagaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgaggaagcgaaagatatacaac 104  Q
    |||||||||| ||||||||||| |||||||||| ||||||||||  |||| |||| || ||| |||||||| ||| | ||||||| ||||||||||||||    
T  11156004 caagcaacctgcacaacaagaaacaagtatgaggccaggaaaagcgaaagagcagtggtggaacttgaataattttacgaggaagtgaaagatatacaac 11156103  T
Q  105 cacataataaaattatt--tatactgaatatgtaataaaatgaatgttacaacac 157  Q
    | |||||||||||||||  ||||| ||||||||||||||||||||||||||||||    
T  11156104 cgcataataaaattatttatataccgaatatgtaataaaatgaatgttacaacac 11156158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 157
Target Start/End: Original strand, 11144826 - 11144983
Alignment:
Q  5 caagcaacctacacaacaagaagcaagtat---gagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgaggaagcgaaagatatac 101  Q
    |||||||||||||| |||||||||||||||   ||||||||||||||  |||| |||| |||||| |||||||| ||| | ||||||| |||||||||||    
T  11144826 caagcaacctacaccacaagaagcaagtattatgagtccaggaaaagcgaaagagcagtggcggaacttgaataattttacgaggaagtgaaagatatac 11144925  T
Q  102 aaccacataataaaattatt--tatactgaatatgtaataaaatgaatgttacaacac 157  Q
    |||| |||||||||||||||  |||||  |||||||||||||||||||||||||||||    
T  11144926 aaccgcataataaaattatttatataccaaatatgtaataaaatgaatgttacaacac 11144983  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 217
Target Start/End: Complemental strand, 8865388 - 8865360
Alignment:
Q  189 agcagtttatttagaactttgaaaattga 217  Q
    |||||||||||||||||||||||||||||    
T  8865388 agcagtttatttagaactttgaaaattga 8865360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 217
Target Start/End: Original strand, 11127370 - 11127398
Alignment:
Q  189 agcagtttatttagaactttgaaaattga 217  Q
    |||||||||||||||||||||||||||||    
T  11127370 agcagtttatttagaactttgaaaattga 11127398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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