View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4519_high_24 (Length: 222)
Name: NF4519_high_24
Description: NF4519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4519_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 51916994 - 51916793
Alignment:
| Q |
1 |
actagtatttattctatcaatctcgacaacagttgttcaatttcgatcacgtaagatcaatattgttctgggtagataaagacctgtatttcttattatc |
100 |
Q |
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| T |
51916994 |
actagtatttattctatcaatctcgacaacagttgttcaatttcgatcacgtaagatcaatattgttctggatagataaagacctgtatttcttattatc |
51916895 |
T |
|
| Q |
101 |
ttgaggttcgcaaccttaaggcccaacccaacaagattttccctcaatttcatatcctccccgctttgtaacccgtaaacaagtggtaagagttgtcgaa |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
51916894 |
ttgagattcgcaaccttaaggcccaacccaacaagattttccctcaatttcatatcctccccactttgtaacccgtaaacaagtggtaagagttgtcgaa |
51916795 |
T |
|
| Q |
201 |
gt |
202 |
Q |
| |
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|| |
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|
| T |
51916794 |
gt |
51916793 |
T |
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