View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4519_high_3 (Length: 516)
Name: NF4519_high_3
Description: NF4519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4519_high_3 |
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| [»] scaffold0446 (2 HSPs) |
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Alignment Details
Target: scaffold0446 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: scaffold0446
Description:
Target: scaffold0446; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 890 - 1266
Alignment:
| Q |
1 |
acagaggttggtttgacgaatcattgtttgacatccaattagtgggaatatagtggcgtgagatttcattaatcattaattatggactattcacgcaagc |
100 |
Q |
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| T |
890 |
acagaggttggtttgacgaatcattgtttgacatccaattagtgggaatatagtggcgtgagatttcattaatcattaattatggactattcaagcaagc |
989 |
T |
|
| Q |
101 |
cccaccacttcacttcagtttaaccttaatcaaacataatttatttcccacccatcaacctttaaattgaaaaatgaaag-ttttttaaggtgttttaca |
199 |
Q |
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| T |
990 |
cccaccacttcacttca-ttttaccttaatcaaacataatttctttcccacccatcaacctttaaattgaaaaatgaaagtttttttaaggtgttttaca |
1088 |
T |
|
| Q |
200 |
tttttgacagataaatctaaaagtaaggtgtttgagtagagagtaaaacgcgataagaaaccatcttaatcaaatgcatatccaacatgaatcacattca |
299 |
Q |
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| T |
1089 |
tttttgacagataaatctaaaagtaaggtgtttgagtagagagtagaacgcgataagaaaccatcttaatcaaatgcatatccaacatgaa------tca |
1182 |
T |
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| Q |
300 |
catcctagataaacaataccgtgtaatagttgatgtttgctcggccacttgcgctactctttaattattattattgcatctata |
383 |
Q |
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| T |
1183 |
catcctagataaacaataccgtgtaatagttgatgtttgctcggccacttgcgctactctttaattattattattgcatgtata |
1266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0446; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 376 - 500
Target Start/End: Original strand, 1306 - 1429
Alignment:
| Q |
376 |
catctataataatgtaggttaaatatttacactctgatttatacaatttttattaggcttggttgcatttccaaattttataattgtgcagttttgaccc |
475 |
Q |
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| T |
1306 |
catctataataatgtaggtaaaatatt-acactctgatttatacaatttttattaggcttggttgcatttccaaattttataattgtgcagttttgaccc |
1404 |
T |
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| Q |
476 |
ttttaatttaaaataaataattttg |
500 |
Q |
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| T |
1405 |
ttttaatttaaaataaataattttg |
1429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 56066333 - 56066709
Alignment:
| Q |
1 |
acagaggttggtttgacgaatcattgtttgacatccaattagtgggaatatagtggcgtgagatttcattaatcattaattatggactattcacgcaagc |
100 |
Q |
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| T |
56066333 |
acagaggttggtttgacgaatcattgtttgacatccaattagtgggaatatagtggcgtgagatttcattaatcattaattatggactattcaagcaagc |
56066432 |
T |
|
| Q |
101 |
cccaccacttcacttcagtttaaccttaatcaaacataatttatttcccacccatcaacctttaaattgaaaaatgaaag-ttttttaaggtgttttaca |
199 |
Q |
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| T |
56066433 |
cccaccacttcacttca-ttttaccttaatcaaacataatttctttcccacccatcaacctttaaattgaaaaatgaaagtttttttaaggtgttttaca |
56066531 |
T |
|
| Q |
200 |
tttttgacagataaatctaaaagtaaggtgtttgagtagagagtaaaacgcgataagaaaccatcttaatcaaatgcatatccaacatgaatcacattca |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
56066532 |
tttttgacagataaatctaaaagtaaggtgtttgagtagagagtagaacgcgataagaaaccatcttaatcaaatgcatatccaacatgaa------tca |
56066625 |
T |
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| Q |
300 |
catcctagataaacaataccgtgtaatagttgatgtttgctcggccacttgcgctactctttaattattattattgcatctata |
383 |
Q |
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| T |
56066626 |
catcctagataaacaataccgtgtaatagttgatgtttgctcggccacttgcgctactctttaattattattattgcatgtata |
56066709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 376 - 500
Target Start/End: Original strand, 56066749 - 56066872
Alignment:
| Q |
376 |
catctataataatgtaggttaaatatttacactctgatttatacaatttttattaggcttggttgcatttccaaattttataattgtgcagttttgaccc |
475 |
Q |
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||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56066749 |
catctataataatgtaggtaaaatatt-acactctgatttatacaatttttattaggcttggttgcatttccaaattttataattgtgcagttttgaccc |
56066847 |
T |
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| Q |
476 |
ttttaatttaaaataaataattttg |
500 |
Q |
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| T |
56066848 |
ttttaatttaaaataaataattttg |
56066872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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