View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4519_high_4 (Length: 451)
Name: NF4519_high_4
Description: NF4519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4519_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 12 - 436
Target Start/End: Complemental strand, 48911552 - 48911128
Alignment:
| Q |
12 |
atgagctgtcctttgagctatttatatgttgtttcttctgcagtttgatgcattggttgcatcacttgcaatatctgatgcaggagaagaagcacaactt |
111 |
Q |
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| T |
48911552 |
atgagctgtcctttgagctatttatatgttgtttcttctgcagtttgatgcattggttgcatcgcttgcaatatctgatgcaggagaagaagcacaactt |
48911453 |
T |
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| Q |
112 |
aagagttaagaggattaaagagctacaagtatgtaacacacagctaaccgacttgatatgtgactcatcgcgtagcttttgacgtgatagtctaattgta |
211 |
Q |
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| T |
48911452 |
aagagttaagaggattaaagaactacaagtatgtaacacacagctaaccgacttgatatgtgactgatcgcgtagcttttgacgtgatagtctaattgta |
48911353 |
T |
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| Q |
212 |
actgatgatattaatgttttcatcgtttctggatatcactttacagactgaaaatgatgcaataggccaagaacttcagaagcaattggaaactgcaggt |
311 |
Q |
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| T |
48911352 |
actgatgatattaatgttttcatcgtttctggatatcactttacaggctgaaaatgatgcaatatgccaagaacttcagaagcaattggaaactgcaggt |
48911253 |
T |
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| Q |
312 |
ctagagttttctctgtttttatcttgatttatctttataaccaattagtgtaaatttacgttaagtacccataccaatagtaagatttgtcagggtcttc |
411 |
Q |
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| T |
48911252 |
ctagagttttctctgtttttatcttgatttatctttataactggttagtgtaaatttactttaagtacccataccaatagtaagatttgtcagggtcttc |
48911153 |
T |
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| Q |
412 |
gatgggctagattctctgtaaaaac |
436 |
Q |
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| T |
48911152 |
gatgggctagattctctgtaaaaac |
48911128 |
T |
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Back To:
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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 236 - 313
Target Start/End: Original strand, 13606127 - 13606204
Alignment:
| Q |
236 |
gtttctggatatcactttacagactgaaaatgatgcaataggccaagaacttcagaagcaattggaaactgcaggtct |
313 |
Q |
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| T |
13606127 |
gtttatggattttactttccaggctgaaaatgacgcagtaggccaagaacttcagaagcaattggaagctgcaggtct |
13606204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 13605925 - 13606001
Alignment:
| Q |
40 |
ttgtttcttctgcagtttgatgcattggttgcatcacttgcaatatctgatgcaggagaagaagcacaacttaagag |
116 |
Q |
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| T |
13605925 |
ttgtttctgctgcagtttgatttactggttgcatcacttccaatatctgagacaggtgaagaagcacaacttaagag |
13606001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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