View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4519_high_5 (Length: 387)

Name: NF4519_high_5
Description: NF4519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4519_high_5
NF4519_high_5
[»] chr5 (23 HSPs)
chr5 (1-375)||(10659405-10659779)
chr5 (1-366)||(10651531-10651896)
chr5 (1-317)||(7193522-7193838)
chr5 (1-146)||(10588008-10588153)
chr5 (1-153)||(10559414-10559566)
chr5 (1-300)||(9827354-9827653)
chr5 (1-300)||(9835723-9836022)
chr5 (1-173)||(19605388-19605560)
chr5 (1-163)||(10716508-10716670)
chr5 (23-163)||(10605290-10605430)
chr5 (1-299)||(10612226-10612524)
chr5 (1-163)||(10739957-10740119)
chr5 (1-327)||(10746399-10746716)
chr5 (1-111)||(11048245-11048355)
chr5 (1-163)||(10762372-10762534)
chr5 (23-144)||(10565541-10565662)
chr5 (216-299)||(10559629-10559712)
chr5 (1-144)||(10581511-10581654)
chr5 (25-114)||(9825591-9825685)
chr5 (247-290)||(10551563-10551606)
chr5 (235-326)||(10716357-10716448)
chr5 (235-318)||(19605243-19605326)
chr5 (235-277)||(10587895-10587937)
[»] chr6 (7 HSPs)
chr6 (1-292)||(12907685-12907976)
chr6 (1-300)||(12958573-12958872)
chr6 (1-300)||(12932774-12933073)
chr6 (1-162)||(12900065-12900226)
chr6 (1-153)||(12949128-12949280)
chr6 (257-300)||(12900324-12900367)
chr6 (247-300)||(12949360-12949413)
[»] scaffold0692 (1 HSPs)
scaffold0692 (1-153)||(7788-7940)
[»] chr2 (1 HSPs)
chr2 (1-300)||(17922812-17923111)


Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 10659779 - 10659405
Alignment:
Q  1 atgtatagcttcggggtgcttctgttggaaatgcttaccggaagaagaccaacggatgaaatgtttgaagagggtcaaaatctgcatatgtttgttgaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10659779 atgtatagcttcggggtgcttctgttggaaatgcttaccggaagaagaccaacggatgaaatgtttgaagagggtcaaaatctgcatatatttgttgaaa 10659680  T
Q  101 tttcatttcctaataatattttacagattttggacccacatcttgtaccaagaaatgaagaagccaaaatagaagaaggaaagagtggaaatttaagtcc 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  10659679 tttcatttccaaataatattttacagattttggacccacatcttgtaccaagaaatgaagaagccaaaatagaagaaggaaagagtggaaatttccctcc 10659580  T
Q  201 aattgtagagaactgcttagtttcactatttcatattggacttgcatgttcagtgaaatcaccaaaagaaagaatgaatatagtggatgtcaccagagag 300  Q
    ||| |||||||| |||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10659579 aatcgtagagaagtgcttagtttcactttttcggattggacttgcatgttcagtgaaatcaccaaaagaaagaatgaatatagttgatgtcaccagagag 10659480  T
Q  301 ttaagcataatcaaaaaggcatttctttccggtgggattgatttaaaattttagatgcttaattccgtatgcctt 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10659479 ttaagcataatcaaaaaggcatttctttccggtgggattgatttagaattttagatgcttaattccgtatgcctt 10659405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 10651896 - 10651531
Alignment:
Q  1 atgtatagcttcggggtgcttctgttggaaatgcttaccggaagaagaccaacggatgaaatgtttgaagagggtcaaaatctgcatatgtttgttgaaa 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||| ||||||||||||||| ||    
T  10651896 atgtatagcttcggggtgcttatgttggaaatgcttaccggaagaagaccaacagatggaatgtttgaagaaggtcaaaatttgcatatgtttgttggaa 10651797  T
Q  101 tttcatttcctaataatattttacagattttggacccacatcttgtaccaagaaatgaagaagccaaaatagaagaaggaaagagtggaaatttaagtcc 200  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||   ||||||||||||||||  |||||||||| | |||    
T  10651796 tttcatttcctaataatattatacagattttggatccacatcttgtaccaagaaatgaagaagaagaaatagaagaaggaaactgtggaaatttcactcc 10651697  T
Q  201 aattgtagagaactgcttagtttcactatttca-tattggacttgcatgttcagtgaaatcaccaaaagaaagaatgaatatagtggatgtcaccagaga 299  Q
    || ||||||||| || ||||||||||| |||||  ||||||||||| |||||||||||||||||||||||||||||||| |||||  ||||||  |||||    
T  10651696 aactgtagagaagtgtttagtttcact-tttcaggattggacttgcttgttcagtgaaatcaccaaaagaaagaatgaacatagttaatgtcatgagaga 10651598  T
Q  300 gttaagcataatcaaaaaggcatttctttccggt-gggattgatttaaaattttagatgcttaattcc 366  Q
    |||| |||| || |||||||| |||||||| ||| ||| |||||| | |||||| |||||||||||||    
T  10651597 gttaggcatgataaaaaaggcctttctttctggtggggtttgattgagaatttt-gatgcttaattcc 10651531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 7193522 - 7193838
Alignment:
Q  1 atgtatagcttcggggtgcttctgttggaaatgcttaccggaagaagaccaacggatgaaatgtttgaagagggtcaaaatctgcatatgtttgttgaaa 100  Q
    ||||||||||||||| ||||| |||||||||| ||||||||||| |||||    ||||||||||||||  | ||||||||||| | ||| ||||||||||    
T  7193522 atgtatagcttcgggatgcttttgttggaaattcttaccggaaggagaccggtagatgaaatgtttgacaatggtcaaaatctacgtatttttgttgaaa 7193621  T
Q  101 tttcatttcctaataatattttacagattttggacccacatcttgtaccaagaaatgaagaagccaaaatagaagaaggaaagagtggaaatttaagtcc 200  Q
    |||| || ||||||||| || |||| |||||||||||| |||||||||||||||||  |||||| | ||||||||| ||||| ||||||||||| | |||    
T  7193622 tttcgttgcctaataatcttatacatattttggacccaaatcttgtaccaagaaatatagaagcaacaatagaagatggaaacagtggaaatttcactcc 7193721  T
Q  201 aattgtagagaactgcttagtttcactatttcatattggacttgcatgttcagtgaaatcaccaaaagaaagaatgaatatagtggatgtcaccagagag 300  Q
    || ||||||||| ||| |||||||||| |||   ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||     
T  7193722 aaatgtagagaagtgcgtagtttcactttttaggattggacttgcttgttcagtggaatcaccaaaagaaagaatgaatatagtggatgtcatcagagac 7193821  T
Q  301 ttaagcataatcaaaaa 317  Q
    |||||||||||||||||    
T  7193822 ttaagcataatcaaaaa 7193838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 10588153 - 10588008
Alignment:
Q  1 atgtatagcttcggggtgcttctgttggaaatgcttaccggaagaagaccaacggatgaaatgtttgaagagggtcaaaatctgcatatgtttgttgaaa 100  Q
    ||||||||||| ||| ||||| ||||||||||| | |||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||    
T  10588153 atgtatagctttgggatgcttatgttggaaatgatcaccggaagaagacccacagatgaaatgtttgaagatggtcaaaatctacatatgtttgttgaaa 10588054  T
Q  101 tttcatttcctaataatattttacagattttggacccacatcttgt 146  Q
     ||||||||   ||||| || |||||||||||||||||||||||||    
T  10588053 gttcatttcaagataatcttatacagattttggacccacatcttgt 10588008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 10559414 - 10559566
Alignment:
Q  1 atgtatagcttcggggtgcttctgttggaaatgcttaccggaagaagaccaacggatgaaatgtttgaagagggtcaaaatctgcatatgtttgttgaaa 100  Q
    ||||||||||| ||| ||||| | ||||||||| |||| |||||||||||||| ||||||||||||  ||| ||||||||||||||| ||| ||||||||    
T  10559414 atgtatagctttgggatgcttatattggaaatgattacaggaagaagaccaactgatgaaatgtttttagatggtcaaaatctgcatttgtatgttgaaa 10559513  T
Q  101 tttcatttcctaataatattttacagattttggacccacatcttgtaccaaga 153  Q
     |||||||||||||||| || | |||||||||||||||||| |||||||||||    
T  10559514 attcatttcctaataatgttatgcagattttggacccacatattgtaccaaga 10559566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 9827653 - 9827354
Alignment:
Q  1 atgtatagcttcggggtgcttctgttggaaatgcttaccggaagaagaccaacggatgaaatgtttgaagagggtcaaaatctgcatatgtttgttgaaa 100  Q
    ||||||||||| ||| ||||  ||||||||||| |||| ||||||||||| || |||||||  ||||| || ||||||||||| | || ||||| |||||    
T  9827653 atgtatagctttgggatgctcgtgttggaaatgattactggaagaagacctacagatgaaagatttgaggatggtcaaaatctacgtacgtttgctgaaa 9827554  T
Q  101 tttcatttcctaataatattttacagattttggacccacatcttgtaccaagaaatgaagaagccaaaatagaagaaggaaagagtggaaatttaagtcc 200  Q
     ||||||  || ||||| ||| |||||||||| ||| |||| ||||||||||| ||||||||||   ||||||||| ||||| ||||  ||| | | |||    
T  9827553 gttcattagctgataatctttcacagattttgaaccaacattttgtaccaagagatgaagaagcagcaatagaagatggaaatagtgagaatcttattcc 9827454  T
Q  201 aattgtagagaactgcttagtttcactatttcatattggacttgcatgttcagtgaaatcaccaaaagaaagaatgaatatagtggatgtcaccagagag 300  Q
    |  |||| |||| |||||||||||| | ||    ||||||||||| ||||||    |||||||||||||||||||||| ||||| ||||| || ||||||    
T  9827453 agctgtaaagaattgcttagtttcagttttaaggattggacttgcctgttcaagagaatcaccaaaagaaagaatgaacatagtagatgttactagagag 9827354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 9836022 - 9835723
Alignment:
Q  1 atgtatagcttcggggtgcttctgttggaaatgcttaccggaagaagaccaacggatgaaatgtttgaagagggtcaaaatctgcatatgtttgttgaaa 100  Q
    ||||||||||| ||| ||||  ||||||||||| |||| ||||||||||| || |||||||  ||||| || ||||||||||| | || ||||| |||||    
T  9836022 atgtatagctttgggatgctcgtgttggaaatgattactggaagaagacctacagatgaaagatttgaggatggtcaaaatctacgtacgtttgctgaaa 9835923  T
Q  101 tttcatttcctaataatattttacagattttggacccacatcttgtaccaagaaatgaagaagccaaaatagaagaaggaaagagtggaaatttaagtcc 200  Q
     ||||||  ||  |||| ||| |||||||||||||| |||| ||||||||||| ||||||||||   ||||||||| ||||| ||||  ||| | | |||    
T  9835922 gttcattagctggtaatctttcacagattttggaccaacattttgtaccaagagatgaagaagcagcaatagaagatggaaatagtgagaatcttattcc 9835823  T
Q  201 aattgtagagaactgcttagtttcactatttcatattggacttgcatgttcagtgaaatcaccaaaagaaagaatgaatatagtggatgtcaccagagag 300  Q
    |  |||| |||| |||||||||||| | ||    ||||||||||| ||||||    |||||||||||||||||||||| ||||| ||||| || ||||||    
T  9835822 agctgtaaagaattgcttagtttcagttttaaggattggacttgcctgttcaagagaatcaccaaaagaaagaatgaacatagtagatgttactagagag 9835723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 19605560 - 19605388
Alignment:
Q  1 atgtatagcttcggggtgcttctgttggaaatgcttaccggaagaagaccaacggatgaaatgtttgaagagggtcaaaatctgcatatgtttgttgaaa 100  Q
    ||||||||||| ||| ||||| | |||||||||||||| ||||||||||| |||||||| ||||||  ||| ||||||||||||| | ||| ||||||||    
T  19605560 atgtatagctttgggatgcttatattggaaatgcttacgggaagaagaccgacggatgacatgtttacagatggtcaaaatctgcgtttgtatgttgaaa 19605461  T
Q  101 tttcatttcctaataatattttacagattttggacccacatcttgtaccaagaaatgaagaagccaaaataga 173  Q
    ||||||||||| |||| ||| |  |||||||||||||   | |||||||||||  ||||||||| | ||||||    
T  19605460 tttcatttcctgataacattatgaagattttggacccgtgtattgtaccaagagttgaagaagcaacaataga 19605388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 10716670 - 10716508
Alignment:
Q  1 atgtatagcttcggggtgcttctgttggaaatgcttaccggaagaagaccaacggatgaaatgtttgaagagggtcaaaatctgcatatgtttgttgaaa 100  Q
    ||||||||||| ||  | ||| ||||||||||||||||||| |||||||| || |||||| | ||| |||| ||||||||||||||||  ||||||| |     
T  10716670 atgtatagctttggaatccttatgttggaaatgcttaccggtagaagacccactgatgaattttttcaagatggtcaaaatctgcataactttgttgcat 10716571  T
Q  101 tttcatttcctaataatattttacagattttggacccacatcttgtaccaagaaatgaagaag 163  Q
     |||||||||| | ||| || || |||||||||| |||||||||||| ||||| ||| |||||    
T  10716570 cttcatttcctgacaatcttataaagattttggatccacatcttgtatcaagagatgcagaag 10716508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 23 - 163
Target Start/End: Original strand, 10605290 - 10605430
Alignment:
Q  23 tgttggaaatgcttaccggaagaagaccaacggatgaaatgtttgaagagggtcaaaatctgcatatgtttgttgaaatttcatttcctaataatatttt 122  Q
    |||||||||| ||||| || || ||||| || |||||| | ||| |||| ||||||||||||||||  ||||||| || |||||||||| ||||||||      
T  10605290 tgttggaaatacttactggtaggagacccactgatgaagtttttcaagatggtcaaaatctgcataactttgttgcaacttcatttcctgataatattaa 10605389  T
Q  123 acagattttggacccacatcttgtaccaagaaatgaagaag 163  Q
    | |||||||||||||||| |||||| ||||| ||| |||||    
T  10605390 agagattttggacccacaccttgtaacaagagatgtagaag 10605430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 10612226 - 10612524
Alignment:
Q  1 atgtatagcttcggggtgcttctgttggaaatgcttaccggaagaagaccaacggatgaaatgtttgaagagggtcaaaatctgcatatgtttgttgaaa 100  Q
    ||||||||||| ||  | ||| ||||||||||||||||||| |||||||| || |||||    |||||||| | ||||||||| ||||  ||||||| ||    
T  10612226 atgtatagctttggaatccttatgttggaaatgcttaccggtagaagacccactgatgaggcatttgaagatgatcaaaatctacataactttgttgcaa 10612325  T
Q  101 tttcatttcctaataatattttacagattttggacccacatcttgtaccaagaaatgaagaagccaaaatagaagaaggaaagagtggaaatttaagtcc 200  Q
         ||||||  |||| || || |||| |||||||||||||||||  ||| | ||| |||||   ||||| |||| ||||||||||  ||| | | |||    
T  10612326 cactgtttcctgctaatcttataaagatcttggacccacatcttgtgtcaaaatatgcagaagtagaaatacaagatggaaagagtgagaatcttattcc 10612425  T
Q  201 aattgtagagaactgcttagtttcactatttcatattggacttgcatgttcagtgaaatcaccaaaagaaagaatgaatatagtggatgtcaccagaga 299  Q
    || | || || | |||||||||||||| |||   |||||||||   |||||| || ||||||| ||||||||||||||||| |||||||| || |||||    
T  10612426 aagtttaaaggagtgcttagtttcactttttaggattggacttctttgttcaatggaatcacccaaagaaagaatgaatattgtggatgttactagaga 10612524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 10740119 - 10739957
Alignment:
Q  1 atgtatagcttcggggtgcttctgttggaaatgcttaccggaagaagaccaacggatgaaatgtttgaagagggtcaaaatctgcatatgtttgttgaaa 100  Q
    ||||||||||| ||  | ||| |||||||||| |||||||| |||||||| || |||||| | ||| |||| ||||||||||| ||||  ||||| | ||    
T  10740119 atgtatagctttggaatccttatgttggaaatacttaccggtagaagacccactgatgaagtttttcaagatggtcaaaatctacataactttgtagcaa 10740020  T
Q  101 tttcatttcctaataatattttacagattttggacccacatcttgtaccaagaaatgaagaag 163  Q
     ||| ||||||  ||| ||| || ||||||||||||||||||||| | ||||| ||| |||||    
T  10740019 cttcgtttcctggtaacattatagagattttggacccacatcttgaagcaagagatgtagaag 10739957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 10746716 - 10746399
Alignment:
Q  1 atgtatagcttcggggtgcttctgttggaaatgcttaccggaagaagaccaacggatgaaatgtttgaagagggtcaaaatctgcatatgtttgttgaaa 100  Q
    ||||||||||| ||  | ||| || ||||||||||||| || |||||||| || |||||| | |||||||| ||||||||||||||||  ||||||| ||    
T  10746716 atgtatagctttggaatccttatgctggaaatgcttactggtagaagacccactgatgaagtttttgaagatggtcaaaatctgcataactttgttgcaa 10746617  T
Q  101 tttcatttcctaataatattttacagattttggacccacatcttgtaccaagaaatgaagaagccaaaatagaagaaggaaagagtggaaatttaagtcc 200  Q
    | || |||||| ||||| || || | || |||||||| |||||| || ||||| ||| ||         ||||||| ||||| | ||  ||| | | |||    
T  10746616 tatcgtttcctgataatcttataaatatcttggacccgcatcttctatcaagagatgcag---------tagaagatggaaacaatgagaatcttattcc 10746526  T
Q  201 aattgtagagaactgcttagtttcactatttcatattggacttgcatgttcagtgaaatcaccaaaagaaagaatgaatatagtggatgtcaccagagag 300  Q
    || |||| |  | || ||||||||||| |||   |||||||||   ||| || |  ||||||||||||||||||||||||  ||||||||||| ||||||    
T  10746525 aactgtaaaagagtgtttagtttcactttttaggattggacttatttgtacaattgaatcaccaaaagaaagaatgaatactgtggatgtcactagagag 10746426  T
Q  301 ttaagcataatcaaaaaggcatttctt 327  Q
     | | |||||||| |||||| ||||||    
T  10746425 ctcaacataatcagaaaggcctttctt 10746399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 11048355 - 11048245
Alignment:
Q  1 atgtatagcttcggggtgcttctgttggaaatgcttaccggaagaagaccaacggatgaaatgtttgaagagggtcaaaatctgcatatgtttgttgaaa 100  Q
    ||||||||||| ||  | ||| ||||||||||||||||||| |||||||| ||  ||||| | |||||||| ||||||||||||||||  ||||||| ||    
T  11048355 atgtatagctttggaatccttatgttggaaatgcttaccggtagaagacccacccatgaagtttttgaagatggtcaaaatctgcataactttgttgcaa 11048256  T
Q  101 tttcatttcct 111  Q
    ||||| |||||    
T  11048255 tttcacttcct 11048245  T

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Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 10762534 - 10762372
Alignment:
Q  1 atgtatagcttcggggtgcttctgttggaaatgcttaccggaagaagaccaacggatgaaatgtttgaagagggtcaaaatctgcatatgtttgttgaaa 100  Q
    ||||||||||| || || ||| ||||| |||| ||||| || |||||||| || |||||| | ||| |||| ||||||||||||||||  ||||| | |     
T  10762534 atgtatagctttggagtccttatgttgaaaatacttactggtagaagacccactgatgaagtttttcaagatggtcaaaatctgcataactttgtagcag 10762435  T
Q  101 tttcatttcctaataatattttacagattttggacccacatcttgtaccaagaaatgaagaag 163  Q
     ||||||||||  ||| ||| || | ||||||||||||||||||| | ||||| ||| |||||    
T  10762434 cttcatttcctggtaacattatagatattttggacccacatcttgaagcaagagatgtagaag 10762372  T

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Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 23 - 144
Target Start/End: Original strand, 10565541 - 10565662
Alignment:
Q  23 tgttggaaatgcttaccggaagaagaccaacggatgaaatgtttgaagagggtcaaaatctgcatatgtttgttgaaatttcatttcctaataatatttt 122  Q
    ||||||||||||||||||| |||||||| || ||| |    |||||||| ||||||||||||||||  ||||||| ||| |||||||||  |||| ||      
T  10565541 tgttggaaatgcttaccggtagaagacccactgatcacgcttttgaagatggtcaaaatctgcataactttgttgcaatatcatttcctggtaatcttaa 10565640  T
Q  123 acagattttggacccacatctt 144  Q
      ||||||||||||||||||||    
T  10565641 gaagattttggacccacatctt 10565662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 299
Target Start/End: Original strand, 10559629 - 10559712
Alignment:
Q  216 cttagtttcactatttcatattggacttgcatgttcagtgaaatcaccaaaagaaagaatgaatatagtggatgtcaccagaga 299  Q
    |||||||||||| |||   ||||||||||||||||| ||| |||| |||| | |||||||||||||| |||||||||| |||||    
T  10559629 cttagtttcactctttaggattggacttgcatgttcggtggaatcgccaacacaaagaatgaatatattggatgtcactagaga 10559712  T

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Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 10581511 - 10581654
Alignment:
Q  1 atgtatagcttcggggtgcttctgttggaaatgcttaccggaagaagaccaacggatgaaatgtttgaagagggtcaaaatctgcatatgtttgttgaaa 100  Q
    ||||||||||| ||  | ||| ||||||||||||||||||| |||||||| || ||| |    |||||||| ||||||||||||||||  ||||||| ||    
T  10581511 atgtatagctttggaatccttatgttggaaatgcttaccggtagaagacccactgatcacgcttttgaagatggtcaaaatctgcataactttgttgcaa 10581610  T
Q  101 tttcatttcctaataatattttacagattttggacccacatctt 144  Q
    | |||||||||  |||| ||    | ||||||||||||||||||    
T  10581611 tatcatttcctgctaatcttaagaaaattttggacccacatctt 10581654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 9825591 - 9825685
Alignment:
Q  25 ttggaaatgcttaccggaagaagaccaacggatgaaatgtttgaagagggtcaaa-----atctgcatatgtttgttgaaatttcatttcctaat 114  Q
    ||||||||||||||  ||||||||||||  ||| |||||||   ||| |||||||     |||||||||||| ||||||||||||||||||||||    
T  9825591 ttggaaatgcttacgagaagaagaccaatagattaaatgttcatagatggtcaaattaaaatctgcatatgtatgttgaaatttcatttcctaat 9825685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 247 - 290
Target Start/End: Original strand, 10551563 - 10551606
Alignment:
Q  247 tgttcagtgaaatcaccaaaagaaagaatgaatatagtggatgt 290  Q
    ||||||||| ||||||||||||||||||||||||| || |||||    
T  10551563 tgttcagtggaatcaccaaaagaaagaatgaatatggttgatgt 10551606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 326
Target Start/End: Complemental strand, 10716448 - 10716357
Alignment:
Q  235 attggacttgcatgttcagtgaaatcaccaaaagaaagaatgaatatagtggatgtcaccagagagttaagcataatcaaaaaggcatttct 326  Q
    ||||||||||  ||| || || ||||||| | |||||||||||||||  |||||||||| |||||| | | |||||||| |||| |||||||    
T  10716448 attggacttgtttgtacaatggaatcaccgatagaaagaatgaatattatggatgtcactagagagctcaacataatcagaaagacatttct 10716357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 19605326 - 19605243
Alignment:
Q  235 attggacttgcatgttcagtgaaatcaccaaaagaaagaatgaatatagtggatgtcaccagagagttaagcataatcaaaaag 318  Q
    ||||||||||| |||||  || |||| || |||||||||||||||||||  |||| ||| |||||| ||| |||||||| ||||    
T  19605326 attggacttgcctgttcgatggaatctcccaaagaaagaatgaatatagaagatgccactagagagctaaacataatcagaaag 19605243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 277
Target Start/End: Complemental strand, 10587937 - 10587895
Alignment:
Q  235 attggacttgcatgttcagtgaaatcaccaaaagaaagaatga 277  Q
    ||||||||||| |||||| || |||||||||||||||||||||    
T  10587937 attggacttgcttgttcaatggaatcaccaaaagaaagaatga 10587895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 12907685 - 12907976
Alignment:
Q  1 atgtatagcttcggggtgcttctgttggaaatgcttaccggaagaagaccaacggatgaaatgtttgaagagggtcaaaatctgcatatgtttgttgaaa 100  Q
    ||||||||||| ||  | ||| || ||||||||||||| || |||||||| || |||||| | |||||||| ||||||||||||||||  ||||||  ||    
T  12907685 atgtatagctttggaatccttatgctggaaatgcttactggtagaagacccactgatgaactttttgaagatggtcaaaatctgcataactttgttacaa 12907784  T
Q  101 tttcatttcctaataatattttacagattttggacccacatcttgtaccaagaaatgaagaagccaaaatagaagaaggaaagagtggaaatttaagtcc 200  Q
    ||||||||||| ||||| || || |||||||||| ||||||||| ||||||||  ||||||||    ||||||||| ||||    ||  | | | | |||    
T  12907785 tttcatttcctgataatcttataaagattttggatccacatcttttaccaagagctgaagaaggaggaatagaagatggaattcatgagattcttattcc 12907884  T
Q  201 aattgtagagaactgcttagtttcactatttcatattggacttgcatgttcagtgaaatcaccaaaagaaagaatgaatatagtggatgtca 292  Q
    || ||||||| | ||||||  |||||| |||   |||||||||  ||||||| || ||||| ||||||||||||||||||| || |||||||    
T  12907885 aaatgtagaggagtgcttaacttcactttttaggattggacttttatgttcattggaatcaacaaaagaaagaatgaatattgtagatgtca 12907976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 12958573 - 12958872
Alignment:
Q  1 atgtatagcttcggggtgcttctgttggaaatgcttaccggaagaagaccaacggatgaaatgtttgaagagggtcaaaatctgcatatgtttgttgaaa 100  Q
    ||||||||||| ||  | ||| || ||||||||||||| || |||||||| || |||||| | |||||||| ||||||||||||||||  ||||||  ||    
T  12958573 atgtatagctttggaatccttatgctggaaatgcttactggtagaagacccactgatgaactttttgaagatggtcaaaatctgcataactttgttacaa 12958672  T
Q  101 tttcatttcctaataatattttacagattttggacccacatcttgtaccaagaaatgaagaagccaaaatagaagaaggaaagagtggaaatttaagtcc 200  Q
     |||||||||| ||||| |  || |||| ||||| ||||||||| ||||||||  |||||| |    || |||||| |||||   ||  | | | | |||    
T  12958673 attcatttcctgataatctaataaagatgttggatccacatcttttaccaagagctgaagatggagcaagagaagatggaaatcatgagattcttattcc 12958772  T
Q  201 aattgtagagaactgcttagtttcactatttcatattggacttgcatgttcagtgaaatcaccaaaagaaagaatgaatatagtggatgtcaccagagag 300  Q
    || ||||||| | |||||||||||||| |||   |||||||||  ||||||| || ||||||||||||||||||||||||| || |||||||| ||||||    
T  12958773 aactgtagaggagtgcttagtttcactttttaggattggacttttatgttcattggaatcaccaaaagaaagaatgaatattgtcgatgtcactagagag 12958872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 12932774 - 12933073
Alignment:
Q  1 atgtatagcttcggggtgcttctgttggaaatgcttaccggaagaagaccaacggatgaaatgtttgaagagggtcaaaatctgcatatgtttgttgaaa 100  Q
    ||||||||||| ||  | ||| || ||||||||||||| || |||||||| || |||||| | |||||||| ||||||||||||||||  ||||||  ||    
T  12932774 atgtatagctttggaatccttatgctggaaatgcttactggtagaagacccaccgatgaactttttgaagatggtcaaaatctgcataactttgttacaa 12932873  T
Q  101 tttcatttcctaataatattttacagattttggacccacatcttgtaccaagaaatgaagaagccaaaatagaagaaggaaagagtggaaattta-agtc 199  Q
    ||||||||||| ||||| || || |||||||||| ||||||||| ||||||||  ||||||||    ||||||||| |||||   | || ||| | | ||    
T  12932874 tttcatttcctgataatcttataaagattttggatccacatcttttaccaagagctgaagaaggagcaatagaagatggaaatcat-gagattcatattc 12932972  T
Q  200 caattgtagagaactgcttagtttcactatttcatattggacttgcatgttcagtgaaatcaccaaaagaaagaatgaatatagtggatgtcaccagaga 299  Q
    ||| | ||||  | ||||| ||||||||  ||   |||| ||||  ||||||  || ||||||||||||||||||||||||| ||||||||||| |||||    
T  12932973 caactatagaagattgctttgtttcacttcttaggattgcacttttatgttctttggaatcaccaaaagaaagaatgaatattgtggatgtcactagaga 12933072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 12900065 - 12900226
Alignment:
Q  1 atgtatagcttcggggtgcttctgttggaaatgcttaccggaagaagaccaacggatgaaatgtttgaagagggtcaaaatctgcatatgtttgttgaaa 100  Q
    ||||||||||| ||  | ||| || ||||||||||||| || |||||||| || |||||| | |||||||| ||||||||||||||||  ||||||  ||    
T  12900065 atgtatagctttggaatccttatgctggaaatgcttactggtagaagacccactgatgaactttttgaagatggtcaaaatctgcataactttgttacaa 12900164  T
Q  101 tttcatttcctaataatattttacagattttggacccacatcttgtaccaagaaatgaagaa 162  Q
    ||||||||||| ||||| || || |||||||||| ||||||||| ||||||||  |||||||    
T  12900165 tttcatttcctgataatcttataaagattttggatccacatcttttaccaagagctgaagaa 12900226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 12949128 - 12949280
Alignment:
Q  1 atgtatagcttcggggtgcttctgttggaaatgcttaccggaagaagaccaacggatgaaatgtttgaagagggtcaaaatctgcatatgtttgttgaaa 100  Q
    ||||||||||| ||  | ||| || ||||||||||||| || |||||||| || |||||| | |||||||| ||||||||||||||||  |||||| |||    
T  12949128 atgtatagctttggaatccttatgctggaaatgcttactggtagaagacccactgatgaactttttgaagatggtcaaaatctgcataactttgttaaaa 12949227  T
Q  101 tttcatttcctaataatattttacagattttggacccacatcttgtaccaaga 153  Q
    |||||||||| |||||| |  || |||||||||| ||||||||| ||||||||    
T  12949228 tttcatttcccaataatttcgtaaagattttggatccacatcttttaccaaga 12949280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 257 - 300
Target Start/End: Original strand, 12900324 - 12900367
Alignment:
Q  257 aatcaccaaaagaaagaatgaatatagtggatgtcaccagagag 300  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||    
T  12900324 aatcaccaaaagaaagaatgaatattgtggatgtcactagagag 12900367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 300
Target Start/End: Original strand, 12949360 - 12949413
Alignment:
Q  247 tgttcagtgaaatcaccaaaagaaagaatgaatatagtggatgtcaccagagag 300  Q
    |||||| || ||||| |||| |||||||||||||| ||||||||||| ||||||    
T  12949360 tgttcattggaatcatcaaatgaaagaatgaatattgtggatgtcactagagag 12949413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 7788 - 7940
Alignment:
Q  1 atgtatagcttcggggtgcttctgttggaaatgcttaccggaagaagaccaacggatgaaatgtttgaagagggtcaaaatctgcatatgtttgttgaaa 100  Q
    ||||||||||| ||  | ||| || ||||||||||||| || |||||||| || |||||| | |||||||| ||||||||||||||||  ||||||  ||    
T  7788 atgtatagctttggaatccttatgctggaaatgcttactggtagaagacccactgatgaactttttgaagatggtcaaaatctgcataactttgttacaa 7887  T
Q  101 tttcatttcctaataatattttacagattttggacccacatcttgtaccaaga 153  Q
    ||||||||||| ||||| || || |||||||||| ||||||||| ||||||||    
T  7888 tttcatttcctgataatcttataaagattttggatccacatcttttaccaaga 7940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 17923111 - 17922812
Alignment:
Q  1 atgtatagcttcggggtgcttctgttggaaatgcttaccggaagaagaccaacggatgaaatgtttgaagagggtcaaaatctgcatatgtttgttgaaa 100  Q
    ||||||||||| ||  | ||| || ||||||||||||||||||||||||| || |||||| | ||| |||| ||||||||||| ||||  ||||||  ||    
T  17923111 atgtatagctttggaatccttatgctggaaatgcttaccggaagaagacccaccgatgaactttttaaagacggtcaaaatctacataactttgttacaa 17923012  T
Q  101 tttcatttcctaataatattttacagattttggacccacatcttgtaccaagaaatgaagaagccaaaatagaagaaggaaagagtggaaatttaagtcc 200  Q
    |||||||||||   ||| || || |||||||||| ||||||||| ||||||||  |||||| |    |  |||||| |||||   ||  | | |   |||    
T  17923011 tttcatttccttgcaatcttataaagattttggatccacatcttttaccaagagctgaagatggagcacgagaagatggaaatcatgagattcttcttcc 17922912  T
Q  201 aattgtagagaactgcttagtttcactatttcatattggacttgcatgttcagtgaaatcaccaaaagaaagaatgaatatagtggatgtcaccagagag 300  Q
    || ||||||| | ||||||||||| || |||   |||||||||   |||||| || ||||||||||||||||||||||||| ||||||||||| ||||||    
T  17922911 aactgtagaggagtgcttagtttccctttttaggattggacttttttgttcattggaatcaccaaaagaaagaatgaatattgtggatgtcactagagag 17922812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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