View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4519_high_6 (Length: 384)
Name: NF4519_high_6
Description: NF4519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4519_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 7 - 375
Target Start/End: Complemental strand, 5176841 - 5176473
Alignment:
| Q |
7 |
aaaatatgatgtggaaaaaattatatcaagccctaaccttcttagcagtaaagaagctaggagaaacnnnnnnntggatgatgtaattaacaataataaa |
106 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5176841 |
aaaatatgatgtggaaaaaattatttcaagccctaaccttcttagcagtaaagaagctaggagaaacaaaaaaatggatgatgtaattaacaataataaa |
5176742 |
T |
|
| Q |
107 |
ccagcttgtacgtttgaagacattgaagaagccattccaatacaaaaaagatacaaaatccaaccattctcaataagtaacatatatgatgaagaagtag |
206 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5176741 |
ccagcttgtgcgtttgaagacattgaagaagccattccaatacaaaaaagatgcaaaatccaaccattctcaataagtaacatatatgatgaagaagtag |
5176642 |
T |
|
| Q |
207 |
aggaatcaaatagaatgcatatgtcaaatccttcttcaattgtgacaagtttgagcagttcaagagaagaaagccctgaaaacatgacaagcttaccaat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5176641 |
aggaatcaaatagaatgcatatgtcaaatccttcttcaattgtgacaagtttgagcagttcaagagaagaaagccctgaaaacatgacaagcttaccaat |
5176542 |
T |
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| Q |
307 |
gctctttggaatgacttcaacaacatcaataatgtcttcattttctttgcctcagatgccactgtctgt |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5176541 |
gctctttggaatgacttcaacaacatcaataatgtcttcattttctttgcctcagatgccactgtctgt |
5176473 |
T |
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