View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4519_high_9 (Length: 345)
Name: NF4519_high_9
Description: NF4519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4519_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 28495372 - 28495699
Alignment:
| Q |
1 |
agaaccggaagaagcaggttttgatagagaaagatttgcagcagatgttgaatttgaagcaggtataccaaatattgatgatgaagaagaacaaatcaag |
100 |
Q |
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| T |
28495372 |
agaaccggaagaagcaggttttgatagagaaagatttgcagcagatgttgaatttgaagcaggtataccaaacattgatgatgaagaagaacaaatcaag |
28495471 |
T |
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| Q |
101 |
gcatta---ttattattattagtagtagcatttcccatttgaactatctcagataaaccagaagaaccataaagggaattagaactttgtcccatttcat |
197 |
Q |
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|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28495472 |
gcattattattattattattagtagcagcatttcccatttgaactatctcagataaaccagaagaaccaaaaagggaattagaactttgtcccatttcat |
28495571 |
T |
|
| Q |
198 |
gattcccttggtttaaccaaagtgataaacttggcctttgttgctccataatcatagtgttgttattgtttccaattccattgaaatctacatgatgaaa |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
28495572 |
gattcccttggtttaaccaaagtgataaacttggcctttgttgctccataatcatag---tgtttttgtttccaattccattgaaatctacatgatgaaa |
28495668 |
T |
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| Q |
298 |
tccatgtgagccaaattgtggatgtggaatt |
328 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
28495669 |
tccatgtgagccaaattgtggatgtggaatt |
28495699 |
T |
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