View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4519_low_11 (Length: 308)
Name: NF4519_low_11
Description: NF4519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4519_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 2798071 - 2798361
Alignment:
| Q |
1 |
tatgaccctcttcctcctcaatactttatccgtgttgtttcttatagttggcttggagcccaaactgttttacctgtttctttcaggcacataattttac |
100 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2798071 |
tatgaacctcttcctcctcaatactttatccgtgttgtttctgataggtggcttggatcccaaactgttttacctgtttctttcaggcacataattttac |
2798170 |
T |
|
| Q |
101 |
ctgaaaagtatcctccacctactgagctgttggatctgcagccactgcctgtgacagccttacaaagtccttcttatgaaactctttatcaggattttaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2798171 |
ctgaaaagtatcctccacctactgagctgttggatctgcagccactgcctgtgacagccttacaaagtccttcttatgaaactctttatcaggattttaa |
2798270 |
T |
|
| Q |
201 |
gcattttaatcctatacagacacaagtcttcacagctctgtataattctgatgacaatgccttagttgctgctccgactgggagtggtaag |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2798271 |
gcattttaatcctatacagacacaagtcttcacagctctgtataattctgatgacaatgccttagttgctgctccgactgggagtggtaag |
2798361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 1673654 - 1673364
Alignment:
| Q |
1 |
tatgaccctcttcctcctcaatactttatccgtgttgtttcttatagttggcttggagcccaaactgttttacctgtttctttcaggcacataattttac |
100 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1673654 |
tatgaacctcttcctcctcaatactttatccgtgttgtttctgataggtggcttggatcccaaactgatttacctgtttctttcaggcacataattttac |
1673555 |
T |
|
| Q |
101 |
ctgaaaagtatcctccacctactgagctgttggatctgcagccactgcctgtgacagccttacaaagtccttcttatgaaactctttatcaggattttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1673554 |
ctgaaaagtatcctccacctactgagctgttggatctgcagccactgcctgtgacagccttacaaagtccttcttatgaaactctttatcaggattttaa |
1673455 |
T |
|
| Q |
201 |
gcattttaatcctatacagacacaagtcttcacagctctgtataattctgatgacaatgccttagttgctgctccgactgggagtggtaag |
291 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1673454 |
gcattttaatcctatacagacacaagtcttcacagctctgtataattctgatgacaatgccttagttgctgctccgacagggagtggtaag |
1673364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 1676129 - 1675839
Alignment:
| Q |
1 |
tatgaccctcttcctcctcaatactttatccgtgttgtttcttatagttggcttggagcccaaactgttttacctgtttctttcaggcacataattttac |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1676129 |
tatgaacctcttcctcctcaatactttatccgtgttgtttctgataggtggcttggatcccaaactgatttacctgtttctttcaggcacataattttac |
1676030 |
T |
|
| Q |
101 |
ctgaaaagtatcctccacctactgagctgttggatctgcagccactgcctgtgacagccttacaaagtccttcttatgaaactctttatcaggattttaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1676029 |
ctgaaaagtatcctccacctactgagctgttggatctgcagccactgcctgtgacagccttacaaagtccttcttatgaaactctttatcaggattttaa |
1675930 |
T |
|
| Q |
201 |
gcattttaatcctatacagacacaagtcttcacagctctgtataattctgatgacaatgccttagttgctgctccgactgggagtggtaag |
291 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1675929 |
gcattttaatcctatacagacacaagtcttcacagctctgtataattctgatgacaatgccttagttgctgctccgacagggagtggtaag |
1675839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 1682657 - 1682367
Alignment:
| Q |
1 |
tatgaccctcttcctcctcaatactttatccgtgttgtttcttatagttggcttggagcccaaactgttttacctgtttctttcaggcacataattttac |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1682657 |
tatgaacctcttcctcctcaatactttatccgtgttgtttctgataggtggcttggatcccaaactggtttacctgtttctttcaggcacataattttac |
1682558 |
T |
|
| Q |
101 |
ctgaaaagtatcctccacctactgagctgttggatctgcagccactgcctgtgacagccttacaaagtccttcttatgaaactctttatcaggattttaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1682557 |
ctgaaaagtatcctccacctactgagctgttggatctgcagccactgcctgtgacagccttacaaagtccttcttatgaaactctttatcaggattttaa |
1682458 |
T |
|
| Q |
201 |
gcattttaatcctatacagacacaagtcttcacagctctgtataattctgatgacaatgccttagttgctgctccgactgggagtggtaag |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1682457 |
gcattttaatcctatacagacacaagtcttcacagctctgtataattctgatgacaatgccttagttgctgctccgaccgggagtggtaag |
1682367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 7 - 287
Target Start/End: Original strand, 29267250 - 29267530
Alignment:
| Q |
7 |
cctcttcctcctcaatactttatccgtgttgtttcttatagttggcttggagcccaaactgttttacctgtttctttcaggcacataattttacctgaaa |
106 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||| ||||||||| ||||||||||| | ||||||||||||||||| ||||||||||||||| |
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| T |
29267250 |
cctcttcctcctcaatacttcatccgtgttgtttctgataaatggcttggatcccaaactgttctgcctgtttctttcaggcatctaattttacctgaaa |
29267349 |
T |
|
| Q |
107 |
agtatcctccacctactgagctgttggatctgcagccactgcctgtgacagccttacaaagtccttcttatgaaactctttatcaggattttaagcattt |
206 |
Q |
| |
|
|||||||||| |||||||| || ||||||||||| ||||| || || || |||||| || ||| || |||||| ||||||||||||||||||||||||| |
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|
| T |
29267350 |
agtatcctccgcctactgaactattggatctgcaaccacttccagttactgccttaagaaatccatcatatgaagctctttatcaggattttaagcattt |
29267449 |
T |
|
| Q |
207 |
taatcctatacagacacaagtcttcacagctctgtataattctgatgacaatgccttagttgctgctccgactgggagtgg |
287 |
Q |
| |
|
|| || ||||||||||||||||||||| || ||||||||||||||||||| | ||||||||||||| ||||||||||| |
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|
| T |
29267450 |
caacccagtacagacacaagtcttcacagtgctatataattctgatgacaatgtcctagttgctgctccaactgggagtgg |
29267530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 9 - 287
Target Start/End: Complemental strand, 29186091 - 29185816
Alignment:
| Q |
9 |
tcttcctcctcaatactttatccgtgttgtttcttatagttggcttggagcccaaactgttttacctgtttctttcaggcacataattttacctgaaaag |
108 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||| ||||||||| ||||||| |||||||||||||||| ||| || | |||||||||||||| |
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| T |
29186091 |
tcttcctcctcaatactctatccgtgttgtttctgataaatggcttggatcccaaacagttttacctgtttcttgcagtcatctcattttacctgaaaac |
29185992 |
T |
|
| Q |
109 |
tatcctccacctactgagctgttggatctgcagccactgcctgtgacagccttacaaagtccttcttatgaaactctttatcaggattttaagcatttta |
208 |
Q |
| |
|
|||||||| |||||| || |||||||||| ||||| || || || |||||| || ||| || |||||| ||||||||||||||||||||||||| | |
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| T |
29185991 |
tatcctcc---tactgaactactggatctgcaaccacttccggttactgccttaagaaatccatcatatgaagctctttatcaggattttaagcatttca |
29185895 |
T |
|
| Q |
209 |
atcctatacagacacaagtcttcacagctctgtataattctgatgacaatgccttagttgctgctccgactgggagtgg |
287 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||||||||||| | ||||||| |||| ||||||||||| |
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| T |
29185894 |
atccagtacagacacaagtcttcacagtactgtataattctgatgacaatgtcctagttgccactccaactgggagtgg |
29185816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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