View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4519_low_13 (Length: 285)
Name: NF4519_low_13
Description: NF4519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4519_low_13 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 8 - 285
Target Start/End: Original strand, 11201114 - 11201391
Alignment:
| Q |
8 |
cacagacatgcaatgaacaaaacatatttgaggtttactacatcaggatctaaaatgtctaagcactttgattgtgcagataatccttaagtcttctact |
107 |
Q |
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| T |
11201114 |
cacagacatgcaatggacaaaacatatttgaggtttactacatcaggatctaaaatgtctaagcactttgattgtgcagataatccttaagtcttctact |
11201213 |
T |
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| Q |
108 |
ttatttgcacagttggaagcaacatataaatgagccttcatatacattatgcgcagtagaaataaatcaaaagtatagcagatctttcaaaacacaaaac |
207 |
Q |
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| T |
11201214 |
ttatttgcacagttggaagcaacatataaatgagccttcatatacattatgcgcagtagaaataaatcaaaagtatagcagatctttcaaaacacaaaac |
11201313 |
T |
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| Q |
208 |
cataaccgaaacagtcattaacggaaacaaaaggacaacggacttggacatcagcaacacaaccgaaactccataatc |
285 |
Q |
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| T |
11201314 |
cataaccgaaacagtcattaacggaaacaaaaggacaactgacttggacatcagcaacacaaccgaaactccataatc |
11201391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 102 - 285
Target Start/End: Original strand, 11162433 - 11162616
Alignment:
| Q |
102 |
tctactttatttgcacagttggaagcaacatataaatgagccttcatatacattatgcgcagtagaaataaatcaaaagtatagcagatctttcaaaaca |
201 |
Q |
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| T |
11162433 |
tctactttatttgcacagttggaagcaacatataaatgagccttcatatacattatgcgcagtagaaataaatcaaaagtatagcagatctttcaaaaca |
11162532 |
T |
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| Q |
202 |
caaaaccataaccgaaacagtcattaacggaaacaaaaggacaacggacttggacatcagcaacacaaccgaaactccataatc |
285 |
Q |
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| T |
11162533 |
caaaaccataaccgaaacagtcattaacggaaacaaaaggacaactgacttggacatcagcaacacaaccgaaactccataatc |
11162616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 11162385 - 11162436
Alignment:
| Q |
8 |
cacagacatgcaatgaacaaaacatatttgaggtttactacatcaggatcta |
59 |
Q |
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| T |
11162385 |
cacagacatgcaatggacaaaacatatttgaggtttactacatcaggatcta |
11162436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 249085 - 248995
Alignment:
| Q |
8 |
cacagacatgcaatgaacaaaacatatttgaggtttactacatcaggatctaaaatgtctaagcactttgattgtgcagataatccttaag |
98 |
Q |
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| T |
249085 |
cacagacatgcaatggacaaaacatatttgaggtttactacctcaggatctaaaatgtctaagcactttgattgtgcagataatccttaag |
248995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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