View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4519_low_20 (Length: 260)
Name: NF4519_low_20
Description: NF4519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4519_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 7304466 - 7304707
Alignment:
| Q |
1 |
atgggcagtggctcctacgagatagggtctggggagggtagatgcacgcagctttacccttacaagcagagagtttgtttgaaatatttaaacccgtaac |
100 |
Q |
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| T |
7304466 |
atgggcagtggctcctacgagatagggtttggggagggtagatgcacacagctttacccttacaagcagagagtttgtttgaaatatttaaacccgtaac |
7304565 |
T |
|
| Q |
101 |
atcattgttacatggcaacaacctaaccgttgcgccaaggctcgccctctaaatagaatagagataatacaagaaaagaaaaatagatcagagaccaacc |
200 |
Q |
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| T |
7304566 |
atcattgttacatggcaacaacctaaccgttgcgccaaggcttgccttctaaatagaatagagataatacaagaaaagaaaaatagatcagagaccaacc |
7304665 |
T |
|
| Q |
201 |
aatgcagcaagatcggcaccactatagttttcacaggctttc |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
7304666 |
aatgcagcaagatcggcaccactatagttttcacaggctttc |
7304707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 242
Target Start/End: Original strand, 7295340 - 7295473
Alignment:
| Q |
110 |
acatggcaacaacctaaccgttgcgccaaggctcgccctctaaatagaatagagataatacaagaa-aagaaaaatagatcagagaccaaccaatgcagc |
208 |
Q |
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||||||||||||||| |||||||||||||||| | ||||||||| |||||| || | ||||| || | ||| || ||||||| |||||||||||| |
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| T |
7295340 |
acatggcaacaaccttaccgttgcgccaaggcccaccctctaaaaagaataaggagattacaataaccaacgaaagagcgcagagacaaaccaatgcagc |
7295439 |
T |
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| Q |
209 |
aagatcggcaccactatagttttcacaggctttc |
242 |
Q |
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| T |
7295440 |
aagatcagcaccattaaagtttttacaagctttc |
7295473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 152
Target Start/End: Original strand, 21333101 - 21333139
Alignment:
| Q |
114 |
ggcaacaacctaaccgttgcgccaaggctcgccctctaa |
152 |
Q |
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||||||||||| ||||||| ||||||||||||||||||| |
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| T |
21333101 |
ggcaacaacctcaccgttgtgccaaggctcgccctctaa |
21333139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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