View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4519_low_22 (Length: 247)
Name: NF4519_low_22
Description: NF4519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4519_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 2798038 - 2797802
Alignment:
| Q |
1 |
catcaatatattgttttttcagcataaaatactcgtgatgaaggatattttccccatcattatcctccacaatcacccaaaacggctcaacatatccatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2798038 |
catcaatatattgttttttcagcataaaatactcgtgatgaaggatattttccccatcattatcctccacaatcacccaaaacggctcaacacatccatg |
2797939 |
T |
|
| Q |
101 |
tactctgtcatcccatgagaaatctggatttattgtgagctcaacccccaaaactgagcaagtaattggctgcacatgggcagcaaggttcaattttggg |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2797938 |
tactctgtcatcccatgagaaatctggagttattgtgagctcaacccccaaaactgagcaagtaattggctgcacatgggcagcaaggttcaattttggg |
2797839 |
T |
|
| Q |
201 |
aattgatgaataaatttatgaaggatcctccccatct |
237 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
2797838 |
aattgatgaataaatttatgaaggatcctccccatct |
2797802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 1673687 - 1673816
Alignment:
| Q |
1 |
catcaatatattgttttttcagcataaaatactcgtgatgaaggatattttccccatcattatcctccacaatcacccaaaacggctcaac--atatcca |
98 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1673687 |
catcaacatattgttttttcagcataaaatactcgtgatgaagaatattttccccatcattatcctccacaatcacccaaaacggctcaacatatatcca |
1673786 |
T |
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| Q |
99 |
tgtactctgtcatcccatgagaaatctgga |
128 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
1673787 |
tgtactctgtcatcccatgagaaatctgga |
1673816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 1676162 - 1676291
Alignment:
| Q |
1 |
catcaatatattgttttttcagcataaaatactcgtgatgaaggatattttccccatcattatcctccacaatcacccaaaacggctcaac--atatcca |
98 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1676162 |
catcaacatattgttttttcagcataaaatactcgtgatgaagaatattttccccatcattatcctccacaatcacccaaaacggctcaacatatatcca |
1676261 |
T |
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| Q |
99 |
tgtactctgtcatcccatgagaaatctgga |
128 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
1676262 |
tgtactctgtcatcccatgagaaatctgga |
1676291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 1682690 - 1682819
Alignment:
| Q |
1 |
catcaatatattgttttttcagcataaaatactcgtgatgaaggatattttccccatcattatcctccacaatcacccaaaacggctcaac--atatcca |
98 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1682690 |
catcaacatattgttttttcagcataaaatactcgtgatgaagaatattttccccatcattatcctccacaatcacccaaaacggctcaacatatatcca |
1682789 |
T |
|
| Q |
99 |
tgtactctgtcatcccatgagaaatctgga |
128 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
1682790 |
tgtactctgtcatcccatgagaaatctgga |
1682819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 3 - 237
Target Start/End: Complemental strand, 29267209 - 29266975
Alignment:
| Q |
3 |
tcaatatattgttttttcagcataaaatactcgtgatgaaggatattttccccatcattatcctccacaatcacccaaaacggctcaacatatccatgta |
102 |
Q |
| |
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||||| || ||||||||||||| ||||||||| ||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
29267209 |
tcaatgtactgttttttcagcaaaaaatactcatgatgaaggatatattcaccatcattatcctccacaatcacccagaacggctcaacatatccatgca |
29267110 |
T |
|
| Q |
103 |
ctctgtcatcccatgagaaatctggatttattgtgagctcaacccccaaaactgagcaagtaattggctgcacatgggcagcaaggttcaattttgggaa |
202 |
Q |
| |
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|||||||||||||| ||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||| || |||||||||| |||||| || |
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| T |
29267109 |
ttctgtcatcccatgcaaaatctggagttattgtgagctcaacccccaaaactgtgcgagtaattggctgcacatgtgctgcaaggttcagttttggaaa |
29267010 |
T |
|
| Q |
203 |
ttgatgaataaatttatgaaggatcctccccatct |
237 |
Q |
| |
|
|||||| |||||| |||||||| |||||||||||| |
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|
| T |
29267009 |
ttgatggataaatctatgaagggtcctccccatct |
29266975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 12 - 223
Target Start/End: Original strand, 29186143 - 29186354
Alignment:
| Q |
12 |
tgttttttcagcataaaatactcgtgatgaaggatattttccccatcattatcctccacaatcacccaaaacggctcaacatatccatgtactctgtcat |
111 |
Q |
| |
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||||||||||||| ||||||||| ||||||||||| | | | ||||| |||||||||| ||||||||| |||||||||||||||||||| | | |||||| |
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| T |
29186143 |
tgttttttcagcaaaaaatactcatgatgaaggatctgtgcaccatctttatcctccataatcacccagaacggctcaacatatccatgcattatgtcat |
29186242 |
T |
|
| Q |
112 |
cccatgagaaatctggatttattgtgagctcaacccccaaaactgagcaagtaattggctgcacatgggcagcaaggttcaattttgggaattgatgaat |
211 |
Q |
| |
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|||||| ||||||||| ||||||||||||||||||| ||||||| | |||| ||||| ||||||| || ||||||||| |||||| |||||| | || |
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| T |
29186243 |
cccatgcaaaatctggagttattgtgagctcaacccctaaaactgcactagtagttggccgcacatgtgcgacaaggttcagttttggaaattgacggat |
29186342 |
T |
|
| Q |
212 |
aaatttatgaag |
223 |
Q |
| |
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|| ||||||||| |
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| T |
29186343 |
aagtttatgaag |
29186354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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