View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4519_low_23 (Length: 226)
Name: NF4519_low_23
Description: NF4519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4519_low_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 5 - 217
Target Start/End: Complemental strand, 10893241 - 10893029
Alignment:
| Q |
5 |
caagcaacctacacaacaagaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgaggaagcgaaagatatacaac |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10893241 |
caagcaacctacacaacaagaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgaggaagcgaaagatatacaac |
10893142 |
T |
|
| Q |
105 |
cacataataaaattatttatactgaatatgtaataaaatgaatgttacaacacagcaagtactattacgttttataaaatctagagcagtttatttagaa |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10893141 |
cacataataaaattatttatactgaatatgtaataaaatgaatgttacaacacagcaagtactattacgttttataaaatctagagcagtttatttagaa |
10893042 |
T |
|
| Q |
205 |
ctttgaaaattga |
217 |
Q |
| |
|
||||||||||||| |
|
|
| T |
10893041 |
ctttgaaaattga |
10893029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 5 - 189
Target Start/End: Complemental strand, 8865628 - 8865444
Alignment:
| Q |
5 |
caagcaacctacacaacaagaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgaggaagcgaaagatatacaac |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8865628 |
caagcaacctacacaacaagaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgaggaagcgaaagatatacaac |
8865529 |
T |
|
| Q |
105 |
cacataataaaattatttatactgaatatgtaataaaatgaatgttacaacacagcaagtactattacgttttataaaatctaga |
189 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8865528 |
cacataataaaattatttataccaaatatgtaataaaatgaatgttacaacacagcaagtactattacgttttataaaatctaga |
8865444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 5 - 189
Target Start/End: Original strand, 11127129 - 11127314
Alignment:
| Q |
5 |
caagcaacctacacaacaagaa-gcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgaggaagcgaaagatatacaa |
103 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11127129 |
caagcaacctacacaacaagaaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgatgaagcgaaagatatacaa |
11127228 |
T |
|
| Q |
104 |
ccacataataaaattatttatactgaatatgtaataaaatgaatgttacaacacagcaagtactattacgttttataaaatctaga |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11127229 |
ccacataataaaattatttatactgaatatgtaataaaatgaatgttacaacacagcaagtactattacgttttataaaatctaga |
11127314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 5 - 157
Target Start/End: Original strand, 11156004 - 11156158
Alignment:
| Q |
5 |
caagcaacctacacaacaagaagcaagtatgagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgaggaagcgaaagatatacaac |
104 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||| |||||||||| |||| |||| || ||| |||||||| ||| | ||||||| |||||||||||||| |
|
|
| T |
11156004 |
caagcaacctgcacaacaagaaacaagtatgaggccaggaaaagcgaaagagcagtggtggaacttgaataattttacgaggaagtgaaagatatacaac |
11156103 |
T |
|
| Q |
105 |
cacataataaaattatt--tatactgaatatgtaataaaatgaatgttacaacac |
157 |
Q |
| |
|
| ||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11156104 |
cgcataataaaattatttatataccgaatatgtaataaaatgaatgttacaacac |
11156158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 157
Target Start/End: Original strand, 11144826 - 11144983
Alignment:
| Q |
5 |
caagcaacctacacaacaagaagcaagtat---gagtccaggaaaaggaaaagtgcagcggcggagcttgaatagtttaatgaggaagcgaaagatatac |
101 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||||| |||| |||| |||||| |||||||| ||| | ||||||| ||||||||||| |
|
|
| T |
11144826 |
caagcaacctacaccacaagaagcaagtattatgagtccaggaaaagcgaaagagcagtggcggaacttgaataattttacgaggaagtgaaagatatac |
11144925 |
T |
|
| Q |
102 |
aaccacataataaaattatt--tatactgaatatgtaataaaatgaatgttacaacac |
157 |
Q |
| |
|
|||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11144926 |
aaccgcataataaaattatttatataccaaatatgtaataaaatgaatgttacaacac |
11144983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 217
Target Start/End: Complemental strand, 8865388 - 8865360
Alignment:
| Q |
189 |
agcagtttatttagaactttgaaaattga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
8865388 |
agcagtttatttagaactttgaaaattga |
8865360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 217
Target Start/End: Original strand, 11127370 - 11127398
Alignment:
| Q |
189 |
agcagtttatttagaactttgaaaattga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
11127370 |
agcagtttatttagaactttgaaaattga |
11127398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University