View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4519_low_7 (Length: 360)
Name: NF4519_low_7
Description: NF4519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4519_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 11 - 354
Target Start/End: Complemental strand, 7304394 - 7304047
Alignment:
| Q |
11 |
aatgatgtcatgtacaagtatattttacatgcttacttatttt-cttctccattagatggacaaagcaatattggctgctctcggagagaagctagccac |
109 |
Q |
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| T |
7304394 |
aatgatgtcacgtgcaagtgtattttacatgtttactgatttttcttctctattagatggacaaagcaatattggctgctctcgaagagaagctagccac |
7304295 |
T |
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| Q |
110 |
aactgcgagaacaagtgatacattgaccgtcgagcgtaagcatttttacgtagcattgactaaagtccgtccctctgtgtcagaaaaggtatgtttcatt |
209 |
Q |
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| T |
7304294 |
aactgcgagaacaagtgatacattgaccgtcgagcgtaagcatttttacgtagcattgactaaagtccatccctctgtgtcagaaaaggtatgtttcatt |
7304195 |
T |
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| Q |
210 |
cttctaaatttctttcatgcatgaaatctaatacatttctgtcctac---attagtcttagaaatatatattgaaatttattctgatttttggagcagca |
306 |
Q |
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| T |
7304194 |
cttctaaatttctttcatgcatgaaatctaatacatttctgtcctacattattagtcttagaaatatatattgaaatttattctgatttttggagcagca |
7304095 |
T |
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| Q |
307 |
aatgaagtactatgatcgtgtttccaagaaacttaaaggtgatgatgt |
354 |
Q |
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| T |
7304094 |
aatgaagtactatgatcgtgtttccaagaaacttaaaggtggtgatgt |
7304047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 43 - 242
Target Start/End: Complemental strand, 7295220 - 7295018
Alignment:
| Q |
43 |
ttacttattttcttctccatta---gatggacaaagcaatattggctgctctcggagagaagctagccacaactgcgagaacaagtgatacattgaccgt |
139 |
Q |
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| T |
7295220 |
ttactgattttcttctccattattagatggacaatgcaatattggccgctctcgcagagaagaggaccacaaccaggacaaaagatgatacattgaccgt |
7295121 |
T |
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| Q |
140 |
cgagcgtaagcatttttacgtagcattgactaaagtccgtccctctgtgtcagaaaaggtatgtttcattcttctaaatttctttcatgcatgaaatcta |
239 |
Q |
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| T |
7295120 |
caaggcaaggcattttgaggtagcactgactaaagtctctccgtctgtgtcagaaatggtatggttcattcttttaaatctctttcatgcatgaaatcta |
7295021 |
T |
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| Q |
240 |
ata |
242 |
Q |
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||| |
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| T |
7295020 |
ata |
7295018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 264 - 321
Target Start/End: Complemental strand, 7295014 - 7294957
Alignment:
| Q |
264 |
ttagaaatatatattgaaatttattctgatttttggagcagcaaatgaagtactatga |
321 |
Q |
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| T |
7295014 |
ttagaaatttatagtcaaatttattctgatttttggagcagcaaaggaagtactatga |
7294957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 309
Target Start/End: Original strand, 39336577 - 39336629
Alignment:
| Q |
257 |
attagtcttagaaatatatattgaaatttattctgatttttggagcagcaaat |
309 |
Q |
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| T |
39336577 |
attagttttagaaatttatatcgaaatttatattgatttttggagcagcaaat |
39336629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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