View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4519_low_8 (Length: 345)
Name: NF4519_low_8
Description: NF4519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4519_low_8 |
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| [»] scaffold0061 (1 HSPs) |
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| [»] scaffold0017 (1 HSPs) |
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| [»] scaffold0380 (1 HSPs) |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 7 - 337
Target Start/End: Complemental strand, 2762377 - 2762047
Alignment:
| Q |
7 |
gcgcaattcttacaatattttgtcttaaaaagaccacacaggtattacnnnnnnngagactatataaatttgttgtatatccataaaagattgaataaaa |
106 |
Q |
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| T |
2762377 |
gcgcaattcttacaatattttgtcttaaaaagaccacacaggtattacaaaaaaagagactatatagatttgttgtatatccataaaagattgaataaaa |
2762278 |
T |
|
| Q |
107 |
caagcaaataggtttatatagtatcaacttcatgtctttcaccttttaaatagatcatgacatatcaacggggttgagtttaatgata-taagttataag |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
2762277 |
caagcaaataggtttatatagtatcaacttcatgtctttcaccttttaaatagatcatgacatatcaacggg-ttgagtttaatgataataagttataag |
2762179 |
T |
|
| Q |
206 |
tattagatagaaaagtagaaaattaaacaacatataaatgagctgactcatgtatctaatgtcttaaaacttttggtgaagatgtggtgttaaaatttat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||| |
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| T |
2762178 |
tattagatagaaaagtagaaaattaaacaacatataaatgagctgactcatgtatctaatgtcttaaagcttttggtgaagatgtggtatgaaaatttat |
2762079 |
T |
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| Q |
306 |
ttgtctggttagtcatagttcaatatgatgat |
337 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
2762078 |
ttgtctggttagtcatagttcaatatgatgat |
2762047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 3395467 - 3395410
Alignment:
| Q |
234 |
aacatataaatgagctgactcatgtatctaatgtcttaaaacttttggtgaagatgtg |
291 |
Q |
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| T |
3395467 |
aacatataagtgagatgactcatatatctaatgtcttaagattttgggtgaagttgtg |
3395410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 23141810 - 23141753
Alignment:
| Q |
234 |
aacatataaatgagctgactcatgtatctaatgtcttaaaacttttggtgaagatgtg |
291 |
Q |
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|||||||||||||| |||||||||||||||||||||||| | ||| ||||||| |||| |
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| T |
23141810 |
aacatataaatgagatgactcatgtatctaatgtcttaagattttgggtgaagttgtg |
23141753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 42797300 - 42797243
Alignment:
| Q |
234 |
aacatataaatgagctgactcatgtatctaatgtcttaaaacttttggtgaagatgtg |
291 |
Q |
| |
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||||||||| |||| |||||||||||||||||||||||| | ||| ||||||| |||| |
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|
| T |
42797300 |
aacatataagtgagatgactcatgtatctaatgtcttaagattttgggtgaagttgtg |
42797243 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 38259319 - 38259275
Alignment:
| Q |
258 |
tatctaatgtcttaaaacttttggtgaagatgtggtgttaaaatt |
302 |
Q |
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| T |
38259319 |
tatctaatgtcttaaaatttctgatgaaaatgtggtgttaaaatt |
38259275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 50331973 - 50331916
Alignment:
| Q |
234 |
aacatataaatgagctgactcatgtatctaatgtcttaaaacttttggtgaagatgtg |
291 |
Q |
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||||||||| |||| |||||||||||||||||||||||| | ||| ||||||| |||| |
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| T |
50331973 |
aacatataagtgagatgactcatgtatctaatgtcttaagattttgggtgaagttgtg |
50331916 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 1599754 - 1599806
Alignment:
| Q |
234 |
aacatataaatgagctgactcatgtatctaatgtcttaaaacttttggtgaag |
286 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||| | ||| ||||||| |
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| T |
1599754 |
aacatataagtgagatgactcatgtatctaatgtcttaagattttgggtgaag |
1599806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 296
Target Start/End: Complemental strand, 45678 - 45608
Alignment:
| Q |
226 |
aattaaacaacatataaatgagctgactcatgtatctaatgtcttaaaacttttggtgaagatgtggtgtt |
296 |
Q |
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|||||| ||||||||||||||| |||| || || |||||||||||| | ||| ||||||||| ||||||| |
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| T |
45678 |
aattaagcaacatataaatgagatgacaaatatacctaatgtcttaagattttgggtgaagatttggtgtt |
45608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 153109 - 153179
Alignment:
| Q |
226 |
aattaaacaacatataaatgagctgactcatgtatctaatgtcttaaaacttttggtgaagatgtggtgtt |
296 |
Q |
| |
|
|||||| ||||||||||||||| |||| || || |||||||||||| | ||| ||||||||| ||||||| |
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| T |
153109 |
aattaagcaacatataaatgagatgacaaatatacctaatgtcttaagattttgggtgaagatttggtgtt |
153179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0380 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0380
Description:
Target: scaffold0380; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 14573 - 14633
Alignment:
| Q |
231 |
aacaacatataaatgagctgactcatgtatctaatgtcttaaaacttttggtgaagatgtg |
291 |
Q |
| |
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||||||||||||||||| ||||||| ||| ||||||||||| | ||| ||||||| |||| |
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| T |
14573 |
aacaacatataaatgagatgactcacatatttaatgtcttaagattttgggtgaagttgtg |
14633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 47177 - 47113
Alignment:
| Q |
231 |
aacaacatataaatgagctgactcatgtatctaatgtcttaaaacttttggtgaagatgtggtgt |
295 |
Q |
| |
|
|||||||||||| |||| |||| || || || ||||||||| ||||| |||||||||||||||| |
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|
| T |
47177 |
aacaacatataagtgagatgacacacatacctcatgtcttaagactttgggtgaagatgtggtgt |
47113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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